Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS10685

Experiment: R2A with Vancomycin 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.06 mg/ml
2,640,659	+		CA265_RS10680	0.16	+0.8
2,640,695	-		CA265_RS10680	0.20	+0.2
2,640,795	+		CA265_RS10680	0.30	+0.3
2,640,837	+		CA265_RS10680	0.34	-0.1
2,640,837	+		CA265_RS10680	0.34	+0.8
2,640,837	+		CA265_RS10680	0.34	-0.0
2,640,838	-		CA265_RS10680	0.34	-1.0
2,640,847	+		CA265_RS10680	0.35	+1.9
2,640,847	+		CA265_RS10680	0.35	-0.6
2,640,847	+		CA265_RS10680	0.35	+0.2
2,640,847	+		CA265_RS10680	0.35	+1.1
2,640,847	+		CA265_RS10680	0.35	+0.0
2,640,847	+		CA265_RS10680	0.35	+0.5
2,640,847	+		CA265_RS10680	0.35	+0.0
2,640,848	-		CA265_RS10680	0.35	-1.6
2,640,874	-		CA265_RS10680	0.38	+0.4
2,640,949	+		CA265_RS10680	0.45	-1.3
2,641,030	+		CA265_RS10680	0.53	+0.2
2,641,031	-		CA265_RS10680	0.53	-0.1
2,641,031	-		CA265_RS10680	0.53	+3.4
2,641,061	+		CA265_RS10680	0.56	-0.2
2,641,137	-		CA265_RS10680	0.64	+1.9
2,641,191	+		CA265_RS10680	0.69	-0.1
2,641,191	+		CA265_RS10680	0.69	-1.1
2,641,199	+		CA265_RS10680	0.70	+0.4
2,641,242	-		CA265_RS10680	0.74	+1.4
2,641,248	+		CA265_RS10680	0.75	-0.3
2,641,319	-		CA265_RS10680	0.82	-0.4
2,641,326	+		CA265_RS10680	0.82	+0.0
2,641,326	+		CA265_RS10680	0.82	-0.6
2,641,326	+		CA265_RS10680	0.82	+0.2
2,641,327	-		CA265_RS10680	0.83	-0.8
2,641,543	-				-0.3
2,641,596	-				-0.5
2,641,642	-				+0.9
2,641,678	-				+0.3
2,641,696	+				-1.0
2,641,697	-				-0.8
2,641,697	-				-0.0
2,641,717	+				-1.3
2,641,767	-				+0.1
2,641,838	+				-0.3
2,641,839	-				+0.8
2,641,839	-				+0.6
2,641,871	-		CA265_RS10685	0.11	-0.5
2,641,960	+		CA265_RS10685	0.16	-2.3
2,642,007	-		CA265_RS10685	0.18	+0.1
2,642,085	-		CA265_RS10685	0.22	-0.4
2,642,085	-		CA265_RS10685	0.22	-0.5
2,642,110	+		CA265_RS10685	0.23	-0.1
2,642,128	+		CA265_RS10685	0.24	-0.4
2,642,165	-		CA265_RS10685	0.26	+0.7
2,642,229	+		CA265_RS10685	0.29	-1.1
2,642,230	-		CA265_RS10685	0.29	-1.0
2,642,244	-		CA265_RS10685	0.30	+0.4
2,642,276	+		CA265_RS10685	0.31	-0.1
2,642,276	+		CA265_RS10685	0.31	+1.7
2,642,307	+		CA265_RS10685	0.33	+0.6
2,642,318	+		CA265_RS10685	0.33	+1.4
2,642,319	-		CA265_RS10685	0.34	+2.0
2,642,354	-		CA265_RS10685	0.35	-0.5
2,642,357	+		CA265_RS10685	0.35	-0.1
2,642,358	-		CA265_RS10685	0.35	+0.2
2,642,420	-		CA265_RS10685	0.39	-1.0
2,642,420	-		CA265_RS10685	0.39	+1.1
2,642,548	+		CA265_RS10685	0.45	-0.8
2,642,638	+		CA265_RS10685	0.49	-0.2
2,642,734	+		CA265_RS10685	0.54	-0.1
2,642,761	-		CA265_RS10685	0.56	+1.9
2,642,783	+		CA265_RS10685	0.57	+1.5
2,642,856	+		CA265_RS10685	0.60	-0.2
2,642,882	-		CA265_RS10685	0.62	+0.3
2,642,902	+		CA265_RS10685	0.63	+0.4
2,642,909	-		CA265_RS10685	0.63	-1.1
2,642,931	+		CA265_RS10685	0.64	+0.0
2,642,964	-		CA265_RS10685	0.66	+0.3
2,642,965	+		CA265_RS10685	0.66	-0.2
2,642,973	+		CA265_RS10685	0.66	+0.8
2,643,044	-		CA265_RS10685	0.70	+0.1
2,643,055	+		CA265_RS10685	0.70	+1.4
2,643,064	+		CA265_RS10685	0.71	+0.9
2,643,064	+		CA265_RS10685	0.71	-1.0
2,643,064	+		CA265_RS10685	0.71	-0.3
2,643,089	+		CA265_RS10685	0.72	-0.3
2,643,112	-		CA265_RS10685	0.73	-1.5
2,643,123	+		CA265_RS10685	0.74	-0.3
2,643,124	+		CA265_RS10685	0.74	-0.3
2,643,142	+		CA265_RS10685	0.75	+0.6
2,643,143	-		CA265_RS10685	0.75	-0.1
2,643,200	-		CA265_RS10685	0.77	+0.8
2,643,200	-		CA265_RS10685	0.77	+0.1
2,643,304	+		CA265_RS10685	0.83	+0.0
2,643,407	-		CA265_RS10685	0.88	+0.2
2,643,428	+		CA265_RS10685	0.89	-0.1
2,643,428	+		CA265_RS10685	0.89	+0.4
2,643,439	+		CA265_RS10685	0.89	+0.2
2,643,439	+		CA265_RS10685	0.89	-1.0
2,643,439	+		CA265_RS10685	0.89	-0.4
2,643,439	+		CA265_RS10685	0.89	-0.5
2,643,439	+		CA265_RS10685	0.89	-0.5
2,643,440	-		CA265_RS10685	0.89	+0.9
2,643,501	-				+1.4
2,643,560	+				-0.5
2,643,562	+				+0.4
2,643,562	+				-0.5
2,643,632	+				-1.2
2,643,650	+				+1.0
2,643,650	+				-0.9
2,643,651	-				-0.7
2,643,651	-				+0.2
2,643,665	+				-1.0
2,643,719	-				-0.9
2,643,726	-				+0.0
2,643,821	+				+0.4
2,643,826	+				+0.2
2,643,827	-				-0.3
2,643,894	+		CA265_RS10690	0.13	-0.6
2,643,895	-		CA265_RS10690	0.13	+0.4
2,643,908	+		CA265_RS10690	0.14	+0.2
2,643,908	+		CA265_RS10690	0.14	+1.2
2,643,909	-		CA265_RS10690	0.14	-0.3
2,643,911	-		CA265_RS10690	0.14	-0.3
2,643,911	-		CA265_RS10690	0.14	+0.3
2,643,919	-		CA265_RS10690	0.14	+0.3
2,643,953	+		CA265_RS10690	0.16	-0.4
2,643,954	-		CA265_RS10690	0.16	+0.2
2,643,954	-		CA265_RS10690	0.16	-1.8
2,643,962	-		CA265_RS10690	0.16	-1.3
2,643,975	+		CA265_RS10690	0.17	-0.0
2,643,978	+		CA265_RS10690	0.17	-0.4
2,644,024	-		CA265_RS10690	0.20	-0.7
2,644,030	-		CA265_RS10690	0.20	+0.0
2,644,030	-		CA265_RS10690	0.20	+0.5
2,644,030	-		CA265_RS10690	0.20	+1.4
2,644,050	+		CA265_RS10690	0.21	-0.5
2,644,050	+		CA265_RS10690	0.21	-0.2
2,644,050	+		CA265_RS10690	0.21	-1.3
2,644,051	-		CA265_RS10690	0.21	+0.4
2,644,053	-		CA265_RS10690	0.21	-0.2
2,644,058	-		CA265_RS10690	0.21	-0.1
2,644,081	+		CA265_RS10690	0.23	+1.1
2,644,081	+		CA265_RS10690	0.23	+0.7
2,644,082	-		CA265_RS10690	0.23	-0.5
2,644,093	+		CA265_RS10690	0.23	+0.5
2,644,108	+		CA265_RS10690	0.24	+0.2
2,644,152	-		CA265_RS10690	0.26	-0.5
2,644,201	+		CA265_RS10690	0.29	-1.0
2,644,202	-		CA265_RS10690	0.29	-0.1
2,644,204	-		CA265_RS10690	0.29	+0.0
2,644,204	-		CA265_RS10690	0.29	-0.5
2,644,206	+		CA265_RS10690	0.29	+0.1
2,644,207	-		CA265_RS10690	0.29	+0.4
2,644,207	-		CA265_RS10690	0.29	-0.5
2,644,259	-		CA265_RS10690	0.32	+0.2
2,644,304	+		CA265_RS10690	0.34	-0.2
2,644,372	-		CA265_RS10690	0.38	+0.8
2,644,420	-		CA265_RS10690	0.41	-1.6
2,644,425	-		CA265_RS10690	0.41	-1.1
2,644,523	-		CA265_RS10690	0.46	+0.5
2,644,525	-		CA265_RS10690	0.46	+0.3
2,644,553	+		CA265_RS10690	0.48	-0.7
2,644,554	-		CA265_RS10690	0.48	-0.6
2,644,582	-		CA265_RS10690	0.49	+0.5
2,644,645	+		CA265_RS10690	0.52	-0.2
2,644,645	+		CA265_RS10690	0.52	-1.0
2,644,647	+		CA265_RS10690	0.52	-0.9
2,644,648	-		CA265_RS10690	0.53	-0.5
2,644,648	-		CA265_RS10690	0.53	-0.4