Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS10625

Experiment: R2A with Vancomycin 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.06 mg/ml
2,624,432	+		CA265_RS10615	0.45	-0.6
2,624,435	+		CA265_RS10615	0.46	-1.0
2,624,438	-		CA265_RS10615	0.47	-0.8
2,624,457	-		CA265_RS10615	0.52	+0.4
2,624,513	+		CA265_RS10615	0.67	+0.8
2,624,587	-		CA265_RS10615	0.87	-1.2
2,624,612	-				-0.8
2,624,654	+				+0.6
2,624,654	+				+0.1
2,624,655	-				+0.2
2,624,707	+				+0.9
2,624,714	+				+0.1
2,624,752	-				-0.4
2,625,019	-		CA265_RS10620	0.48	+0.9
2,625,052	-		CA265_RS10620	0.53	+0.6
2,625,078	+		CA265_RS10620	0.58	+0.0
2,625,079	-		CA265_RS10620	0.58	+0.5
2,625,079	-		CA265_RS10620	0.58	+0.3
2,625,081	-		CA265_RS10620	0.58	+0.1
2,625,126	+		CA265_RS10620	0.66	-0.2
2,625,167	-		CA265_RS10620	0.73	+1.8
2,625,184	+		CA265_RS10620	0.75	+0.7
2,625,187	-		CA265_RS10620	0.76	-0.2
2,625,289	-				+0.3
2,625,307	+				-0.3
2,625,312	+				+0.3
2,625,313	-				+0.4
2,625,315	-				-0.4
2,625,333	-				+0.4
2,625,364	+				+4.9
2,625,392	-				+0.4
2,625,450	+				+0.6
2,625,478	-				+0.8
2,625,478	-				+1.2
2,625,525	-				+0.8
2,625,538	+				+0.1
2,625,540	+				-1.3
2,625,541	-				-0.3
2,625,568	-				+0.7
2,625,699	+		CA265_RS10625	0.16	-0.1
2,625,753	-		CA265_RS10625	0.19	+0.6
2,625,839	-		CA265_RS10625	0.23	+1.1
2,625,851	+		CA265_RS10625	0.24	+0.9
2,625,869	+		CA265_RS10625	0.25	-0.5
2,625,869	+		CA265_RS10625	0.25	+0.2
2,625,874	+		CA265_RS10625	0.25	+2.0
2,625,897	+		CA265_RS10625	0.27	+0.9
2,625,923	-		CA265_RS10625	0.28	-0.0
2,625,997	+		CA265_RS10625	0.32	-0.4
2,625,997	+		CA265_RS10625	0.32	-0.4
2,626,008	-		CA265_RS10625	0.32	+0.7
2,626,023	-		CA265_RS10625	0.33	+1.0
2,626,023	-		CA265_RS10625	0.33	-0.0
2,626,183	+		CA265_RS10625	0.41	+0.3
2,626,183	+		CA265_RS10625	0.41	-0.4
2,626,310	+		CA265_RS10625	0.48	+0.1
2,626,316	+		CA265_RS10625	0.48	-1.2
2,626,329	+		CA265_RS10625	0.49	+0.3
2,626,329	+		CA265_RS10625	0.49	-0.6
2,626,330	-		CA265_RS10625	0.49	-0.5
2,626,330	-		CA265_RS10625	0.49	+0.5
2,626,331	+		CA265_RS10625	0.49	+0.1
2,626,332	-		CA265_RS10625	0.49	+0.5
2,626,401	+		CA265_RS10625	0.53	+1.5
2,626,402	-		CA265_RS10625	0.53	+0.1
2,626,449	-		CA265_RS10625	0.55	+0.7
2,626,477	-		CA265_RS10625	0.57	+0.3
2,626,519	-		CA265_RS10625	0.59	-0.8
2,626,519	-		CA265_RS10625	0.59	+0.3
2,626,547	-		CA265_RS10625	0.61	+1.0
2,626,551	-		CA265_RS10625	0.61	+0.2
2,626,551	-		CA265_RS10625	0.61	+2.8
2,626,592	+		CA265_RS10625	0.63	-0.1
2,626,595	-		CA265_RS10625	0.63	+0.6
2,626,619	-		CA265_RS10625	0.64	-1.2
2,626,650	-		CA265_RS10625	0.66	+0.4
2,626,681	-		CA265_RS10625	0.68	-0.6
2,626,729	-		CA265_RS10625	0.70	+0.4
2,626,754	+		CA265_RS10625	0.71	-1.3
2,626,754	+		CA265_RS10625	0.71	-1.1
2,626,815	+		CA265_RS10625	0.75	+0.3
2,626,862	+		CA265_RS10625	0.77	+0.9
2,626,880	+		CA265_RS10625	0.78	+1.7
2,626,881	-		CA265_RS10625	0.78	-0.0
2,626,934	-		CA265_RS10625	0.81	+0.1
2,626,938	+		CA265_RS10625	0.81	-1.4
2,626,991	+		CA265_RS10625	0.84	-0.6
2,626,992	-		CA265_RS10625	0.84	+0.0
2,627,039	-		CA265_RS10625	0.86	+0.6
2,627,217	+				+0.2
2,627,218	-				-0.0
2,627,269	-				+1.4
2,627,320	-				+0.1
2,627,365	+				+1.3
2,627,367	+				-0.5
2,627,368	-				-0.2
2,627,427	-				-0.7
2,627,468	+				-1.5
2,627,474	+				+1.0
2,627,481	-				+1.6
2,627,511	+				-0.2
2,627,520	-				-2.3
2,627,696	+				+0.2
2,627,718	+				+0.2
2,627,719	-				+2.4
2,627,796	-				-0.0
2,627,817	-				-1.0
2,627,817	-				+0.1
2,627,892	+				-0.6
2,627,893	-				+0.2
2,627,899	+				+0.4
2,627,908	+				-1.5
2,627,914	+				+0.1
2,628,074	-				-0.4
2,628,080	-				+0.4
2,628,080	-				-0.1
2,628,210	+				+0.5
2,628,210	+				+0.4