Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS10425

Experiment: R2A with Vancomycin 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.06 mg/ml
2,578,133	+		CA265_RS10420	0.16	+0.5
2,578,152	-		CA265_RS10420	0.18	+0.5
2,578,260	-		CA265_RS10420	0.29	+0.3
2,578,287	+		CA265_RS10420	0.31	-1.1
2,578,288	-		CA265_RS10420	0.31	+0.1
2,578,288	-		CA265_RS10420	0.31	-0.5
2,578,352	+		CA265_RS10420	0.38	-1.5
2,578,411	+		CA265_RS10420	0.44	-0.1
2,578,411	+		CA265_RS10420	0.44	-0.1
2,578,412	-		CA265_RS10420	0.44	-1.6
2,578,602	-		CA265_RS10420	0.63	-0.4
2,578,603	+		CA265_RS10420	0.63	-3.7
2,578,631	+		CA265_RS10420	0.66	-0.6
2,578,733	+		CA265_RS10420	0.76	-0.7
2,578,787	+		CA265_RS10420	0.81	-0.7
2,578,788	-		CA265_RS10420	0.81	+0.9
2,578,806	-		CA265_RS10420	0.83	-0.0
2,578,811	+		CA265_RS10420	0.83	-0.5
2,578,818	+		CA265_RS10420	0.84	+0.6
2,578,909	+				-0.5
2,578,966	-				-0.8
2,578,977	-				+0.8
2,578,995	+				-0.3
2,578,999	+				-0.9
2,579,060	+				-0.3
2,579,061	-				-0.0
2,579,153	+				-0.9
2,579,162	+				-1.2
2,579,163	-				+1.2
2,579,198	+				-0.2
2,579,198	+				-0.6
2,579,206	+				+0.2
2,579,213	+				+0.9
2,579,253	+				+0.7
2,579,254	-				+0.4
2,579,254	-				-0.3
2,579,274	+				-0.4
2,579,275	-				+0.6
2,579,332	-		CA265_RS10425	0.11	+0.6
2,579,382	+		CA265_RS10425	0.13	+0.5
2,579,382	+		CA265_RS10425	0.13	-0.1
2,579,418	-		CA265_RS10425	0.14	+0.5
2,579,491	+		CA265_RS10425	0.17	-0.4
2,579,623	-		CA265_RS10425	0.21	+0.2
2,579,664	+		CA265_RS10425	0.23	-1.9
2,579,669	+		CA265_RS10425	0.23	-0.4
2,579,669	+		CA265_RS10425	0.23	-1.3
2,579,705	-		CA265_RS10425	0.24	+1.3
2,579,705	-		CA265_RS10425	0.24	+0.5
2,579,710	+		CA265_RS10425	0.25	+0.3
2,579,760	+		CA265_RS10425	0.26	+1.3
2,579,767	+		CA265_RS10425	0.27	-0.0
2,579,828	+		CA265_RS10425	0.29	-0.4
2,579,845	+		CA265_RS10425	0.29	-2.8
2,579,855	+		CA265_RS10425	0.30	+0.9
2,579,871	-		CA265_RS10425	0.30	-0.6
2,579,891	+		CA265_RS10425	0.31	-0.2
2,579,891	+		CA265_RS10425	0.31	+0.0
2,579,892	-		CA265_RS10425	0.31	+0.4
2,579,921	+		CA265_RS10425	0.32	+1.1
2,579,927	+		CA265_RS10425	0.32	-0.4
2,579,928	-		CA265_RS10425	0.32	+1.1
2,579,928	-		CA265_RS10425	0.32	+1.0
2,579,998	+		CA265_RS10425	0.35	+0.5
2,580,064	+		CA265_RS10425	0.37	+0.3
2,580,069	-		CA265_RS10425	0.38	+0.6
2,580,195	-		CA265_RS10425	0.42	-0.7
2,580,195	-		CA265_RS10425	0.42	+0.3
2,580,195	-		CA265_RS10425	0.42	-0.2
2,580,271	-		CA265_RS10425	0.45	+0.7
2,580,271	-		CA265_RS10425	0.45	+0.9
2,580,413	-		CA265_RS10425	0.50	-2.7
2,580,464	-		CA265_RS10425	0.52	+0.5
2,580,465	+		CA265_RS10425	0.52	+0.3
2,580,465	+		CA265_RS10425	0.52	+0.5
2,580,465	+		CA265_RS10425	0.52	-0.9
2,580,465	+		CA265_RS10425	0.52	+1.2
2,580,465	+		CA265_RS10425	0.52	-2.8
2,580,465	+		CA265_RS10425	0.52	-0.4
2,580,466	-		CA265_RS10425	0.52	+1.9
2,580,466	-		CA265_RS10425	0.52	-0.5
2,580,529	+		CA265_RS10425	0.54	-1.0
2,580,546	+		CA265_RS10425	0.55	-0.3
2,580,547	-		CA265_RS10425	0.55	-0.1
2,580,556	-		CA265_RS10425	0.55	+0.3
2,580,577	+		CA265_RS10425	0.56	-1.0
2,580,609	-		CA265_RS10425	0.57	+0.7
2,580,610	+		CA265_RS10425	0.57	+0.8
2,580,614	-		CA265_RS10425	0.57	+0.3
2,580,627	-		CA265_RS10425	0.58	-0.9
2,580,627	-		CA265_RS10425	0.58	+0.4
2,580,714	+		CA265_RS10425	0.61	-0.4
2,580,715	-		CA265_RS10425	0.61	-0.0
2,580,716	+		CA265_RS10425	0.61	-1.4
2,580,717	-				+0.3
2,580,836	+		CA265_RS10425	0.65	+0.5
2,580,841	+		CA265_RS10425	0.66	-0.5
2,580,841	+		CA265_RS10425	0.66	+0.1
2,580,842	-		CA265_RS10425	0.66	+1.0
2,580,904	+		CA265_RS10425	0.68	-0.0
2,580,973	+		CA265_RS10425	0.70	-0.2
2,580,974	-		CA265_RS10425	0.70	+1.1
2,581,038	-		CA265_RS10425	0.73	+0.2
2,581,038	-		CA265_RS10425	0.73	+3.3
2,581,041	-		CA265_RS10425	0.73	+1.0
2,581,073	+		CA265_RS10425	0.74	-0.8
2,581,073	+		CA265_RS10425	0.74	-0.2
2,581,074	-		CA265_RS10425	0.74	+0.0
2,581,330	+		CA265_RS10425	0.83	-0.1
2,581,331	-		CA265_RS10425	0.83	+0.6
2,581,331	-		CA265_RS10425	0.83	-0.2
2,581,345	+		CA265_RS10425	0.84	+0.8
2,581,356	-		CA265_RS10425	0.84	+2.1
2,581,397	-		CA265_RS10425	0.86	+0.3
2,581,463	+		CA265_RS10425	0.88	-0.8
2,581,463	+		CA265_RS10425	0.88	-1.0
2,581,522	+				+0.5
2,581,522	+				+1.0
2,581,546	-				+0.8
2,581,573	+				-0.5
2,581,607	+				+0.2
2,581,608	-				+0.2
2,581,632	-				-0.6
2,581,644	-				-1.0
2,581,666	+				-0.1
2,581,672	-				+0.6
2,581,770	-				+1.2
2,581,775	+				-0.6
2,581,798	-				-0.3
2,581,897	+				-0.8
2,581,997	+				+0.2
2,582,071	+		CA265_RS10430	0.29	-0.8
2,582,071	+		CA265_RS10430	0.29	+0.4
2,582,102	+		CA265_RS10430	0.41	-2.0
2,582,116	+		CA265_RS10430	0.46	-0.3
2,582,129	+		CA265_RS10430	0.51	-0.2
2,582,171	+		CA265_RS10430	0.68	-0.8
2,582,199	-		CA265_RS10430	0.79	+0.2
2,582,251	-				-0.2
2,582,355	+		CA265_RS10435	0.44	-0.6
2,582,355	+		CA265_RS10435	0.44	-0.5
2,582,356	-		CA265_RS10435	0.45	-0.8
2,582,366	-		CA265_RS10435	0.50	+0.7
2,582,380	+		CA265_RS10435	0.57	-0.8
2,582,381	-		CA265_RS10435	0.58	+0.8
2,582,387	-		CA265_RS10435	0.61	+0.3
2,582,410	+		CA265_RS10435	0.73	-1.9
2,582,440	-		CA265_RS10435	0.89	+1.3
2,582,442	+				-0.2
2,582,442	+				-0.0
2,582,460	-				+1.2
2,582,547	+				+4.3
2,582,564	-				-0.9
2,582,674	+				-1.6
2,582,675	-				-0.2
2,582,696	-				+1.6
2,582,716	+				+0.0
2,582,717	-				-1.7
2,582,779	+				-0.1
2,582,779	+				-0.3
2,582,792	-				+0.5
2,582,792	-				-1.5