Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS10270

Experiment: R2A with Vancomycin 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.06 mg/ml
2,530,838	-		CA265_RS10265	0.85	-2.2
2,530,925	-		CA265_RS10265	0.87	-1.5
2,530,925	-		CA265_RS10265	0.87	-1.4
2,530,952	-		CA265_RS10265	0.88	-0.7
2,530,992	-		CA265_RS10265	0.89	-0.1
2,531,061	+				+0.9
2,531,137	+				-0.2
2,531,137	+				+0.2
2,531,239	+				+0.6
2,531,335	+				+1.0
2,531,336	-				+0.5
2,531,399	-				+0.1
2,531,508	-				-0.9
2,531,510	+				+0.4
2,531,510	+				+0.5
2,531,511	-				-0.1
2,531,516	+				+0.7
2,531,528	-				+0.8
2,531,581	+				+0.5
2,531,626	-				-0.0
2,531,873	+				-0.5
2,531,874	-				+0.7
2,531,885	+				+0.4
2,531,928	-				+0.1
2,531,934	+				-0.5
2,531,934	+				-0.1
2,531,956	+				-1.1
2,531,997	+				+0.5
2,531,998	-				+0.6
2,532,056	-		CA265_RS10270	0.11	+0.2
2,532,094	+		CA265_RS10270	0.12	+0.1
2,532,168	+		CA265_RS10270	0.16	-0.2
2,532,176	+		CA265_RS10270	0.16	+0.8
2,532,177	-		CA265_RS10270	0.16	-0.8
2,532,363	-		CA265_RS10270	0.25	+0.8
2,532,363	-		CA265_RS10270	0.25	+0.5
2,532,366	+		CA265_RS10270	0.25	+1.0
2,532,366	+		CA265_RS10270	0.25	-0.0
2,532,367	-		CA265_RS10270	0.25	+0.2
2,532,430	+		CA265_RS10270	0.28	-1.2
2,532,431	-		CA265_RS10270	0.28	+0.4
2,532,436	-		CA265_RS10270	0.28	+1.1
2,532,440	+		CA265_RS10270	0.28	-0.3
2,532,459	+		CA265_RS10270	0.29	-2.4
2,532,460	-		CA265_RS10270	0.29	+0.9
2,532,512	-		CA265_RS10270	0.31	-0.5
2,532,523	-		CA265_RS10270	0.32	-0.2
2,532,526	+		CA265_RS10270	0.32	-0.0
2,532,526	+		CA265_RS10270	0.32	-0.2
2,532,555	+		CA265_RS10270	0.33	-0.5
2,532,577	+		CA265_RS10270	0.34	+1.0
2,532,577	+		CA265_RS10270	0.34	+2.9
2,532,578	-		CA265_RS10270	0.34	+0.0
2,532,590	+		CA265_RS10270	0.35	-0.3
2,532,607	+		CA265_RS10270	0.36	+2.2
2,532,924	-		CA265_RS10270	0.50	+0.5
2,532,977	+		CA265_RS10270	0.53	-0.3
2,533,086	-		CA265_RS10270	0.58	+0.1
2,533,086	-		CA265_RS10270	0.58	+0.3
2,533,163	+		CA265_RS10270	0.61	+0.2
2,533,385	+		CA265_RS10270	0.71	+0.3
2,533,389	+		CA265_RS10270	0.72	+0.8
2,533,511	+		CA265_RS10270	0.77	-0.7
2,533,511	+		CA265_RS10270	0.77	+1.4
2,533,512	-		CA265_RS10270	0.77	+0.1
2,533,512	-		CA265_RS10270	0.77	+0.4
2,533,512	-		CA265_RS10270	0.77	+1.2
2,533,539	-		CA265_RS10270	0.79	-0.3
2,533,544	+		CA265_RS10270	0.79	+0.1
2,533,545	-		CA265_RS10270	0.79	+1.5
2,533,563	+		CA265_RS10270	0.80	-0.5
2,533,563	+		CA265_RS10270	0.80	+0.6
2,533,563	+		CA265_RS10270	0.80	-0.8
2,533,651	-		CA265_RS10270	0.84	-0.2
2,533,665	-		CA265_RS10270	0.84	-0.2
2,533,676	+		CA265_RS10270	0.85	+0.1
2,533,676	+		CA265_RS10270	0.85	-0.4
2,533,677	-		CA265_RS10270	0.85	+0.1
2,533,709	+		CA265_RS10270	0.86	+1.2
2,533,769	+		CA265_RS10270	0.89	-0.3
2,533,770	-		CA265_RS10270	0.89	+0.1
2,533,794	-				-0.6
2,533,812	-				+0.2
2,533,834	+				+0.8
2,533,878	+				-0.5
2,533,952	+				-0.6
2,533,953	-				-0.5
2,533,967	+				+0.1
2,534,009	-				+0.0
2,534,069	+				-0.2
2,534,074	-				+0.3
2,534,077	-				+0.5
2,534,106	-				-0.5
2,534,199	+				-0.8
2,534,200	-				-0.3
2,534,200	-				+0.6
2,534,243	-				-0.1
2,534,263	+				-1.4
2,534,264	-				+0.2
2,534,269	+				-0.1
2,534,270	-				-0.3
2,534,274	-				+0.4
2,534,288	+				+1.5
2,534,330	-		CA265_RS10275	0.12	+0.2
2,534,498	-		CA265_RS10275	0.20	+0.1
2,534,546	-		CA265_RS10275	0.22	+0.3
2,534,546	-		CA265_RS10275	0.22	-0.5
2,534,547	+		CA265_RS10275	0.22	+0.8
2,534,597	-		CA265_RS10275	0.25	-0.7
2,534,597	-		CA265_RS10275	0.25	-0.4
2,534,598	+		CA265_RS10275	0.25	+0.5
2,534,598	+		CA265_RS10275	0.25	-0.6
2,534,599	-		CA265_RS10275	0.25	+2.3
2,534,599	-		CA265_RS10275	0.25	+0.3
2,534,599	-		CA265_RS10275	0.25	+0.1
2,534,651	+		CA265_RS10275	0.27	+0.1
2,534,651	+		CA265_RS10275	0.27	+0.7
2,534,652	-		CA265_RS10275	0.28	+0.9
2,534,656	-		CA265_RS10275	0.28	-0.1
2,534,670	-		CA265_RS10275	0.28	-0.3
2,534,743	+		CA265_RS10275	0.32	-1.6
2,534,810	+		CA265_RS10275	0.35	+0.9
2,534,810	+		CA265_RS10275	0.35	-0.5
2,534,824	+		CA265_RS10275	0.36	-0.3
2,534,904	-		CA265_RS10275	0.40	-0.2
2,534,904	-		CA265_RS10275	0.40	-0.1
2,534,921	+		CA265_RS10275	0.41	-0.7
2,534,922	-		CA265_RS10275	0.41	+0.5
2,534,923	+		CA265_RS10275	0.41	-1.1
2,534,924	-		CA265_RS10275	0.41	+1.1