Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS09565

Experiment: R2A with Vancomycin 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.06 mg/ml
2,365,807	+		CA265_RS09560	0.12	-2.8
2,365,808	-		CA265_RS09560	0.12	-1.9
2,365,817	-		CA265_RS09560	0.13	-2.3
2,365,890	-		CA265_RS09560	0.20	-0.5
2,365,890	-		CA265_RS09560	0.20	-1.6
2,365,891	+		CA265_RS09560	0.20	-1.4
2,365,893	+				+1.4
2,365,984	+		CA265_RS09560	0.29	-3.0
2,366,031	-		CA265_RS09560	0.34	-3.1
2,366,084	+		CA265_RS09560	0.39	-2.6
2,366,136	-		CA265_RS09560	0.44	-1.4
2,366,168	-		CA265_RS09560	0.47	-1.9
2,366,218	+		CA265_RS09560	0.52	-2.8
2,366,223	+		CA265_RS09560	0.52	-1.7
2,366,224	-		CA265_RS09560	0.52	-3.0
2,366,224	-		CA265_RS09560	0.52	-1.9
2,366,240	-		CA265_RS09560	0.54	-1.9
2,366,364	+		CA265_RS09560	0.65	-3.2
2,366,383	-		CA265_RS09560	0.67	-2.0
2,366,385	+		CA265_RS09560	0.67	-2.1
2,366,388	-		CA265_RS09560	0.68	-0.2
2,366,397	+		CA265_RS09560	0.69	-2.5
2,366,397	+		CA265_RS09560	0.69	-1.1
2,366,397	+		CA265_RS09560	0.69	-2.1
2,366,397	+		CA265_RS09560	0.69	-1.5
2,366,402	+		CA265_RS09560	0.69	-1.3
2,366,403	-		CA265_RS09560	0.69	-1.9
2,366,490	+		CA265_RS09560	0.77	+1.0
2,366,490	+		CA265_RS09560	0.77	-2.5
2,366,491	-		CA265_RS09560	0.78	-1.5
2,366,491	-		CA265_RS09560	0.78	-2.7
2,366,503	+		CA265_RS09560	0.79	-1.5
2,366,509	+		CA265_RS09560	0.79	-2.2
2,366,624	-				-2.6
2,366,624	-				-1.7
2,366,641	+				-0.2
2,366,642	-				+1.4
2,366,791	+				-0.3
2,366,901	+				-0.7
2,366,902	-				+0.0
2,366,908	+				-0.3
2,366,909	-				+0.4
2,366,910	+				+0.4
2,366,941	-		CA265_RS09565	0.12	-0.5
2,366,961	+		CA265_RS09565	0.14	+1.8
2,366,962	-		CA265_RS09565	0.14	-0.0
2,366,962	-		CA265_RS09565	0.14	-0.8
2,366,984	+		CA265_RS09565	0.16	-0.2
2,366,984	+		CA265_RS09565	0.16	+0.8
2,366,985	-		CA265_RS09565	0.16	-0.3
2,367,026	+		CA265_RS09565	0.19	-2.4
2,367,057	+		CA265_RS09565	0.22	-0.7
2,367,063	-		CA265_RS09565	0.22	-0.8
2,367,063	-		CA265_RS09565	0.22	-0.5
2,367,195	-		CA265_RS09565	0.34	-0.5
2,367,216	+		CA265_RS09565	0.35	-0.2
2,367,217	-		CA265_RS09565	0.35	-0.0
2,367,220	+		CA265_RS09565	0.36	-1.3
2,367,221	-		CA265_RS09565	0.36	-2.2
2,367,225	-		CA265_RS09565	0.36	+0.2
2,367,225	-		CA265_RS09565	0.36	-0.1
2,367,230	+		CA265_RS09565	0.37	-0.5
2,367,356	+		CA265_RS09565	0.47	-0.1
2,367,372	-		CA265_RS09565	0.49	+0.3
2,367,526	+		CA265_RS09565	0.62	-0.2
2,367,593	+		CA265_RS09565	0.68	-0.7
2,367,615	+		CA265_RS09565	0.70	+0.1
2,367,616	-		CA265_RS09565	0.70	-0.2
2,367,645	+		CA265_RS09565	0.72	-1.0
2,367,646	-		CA265_RS09565	0.72	+0.2
2,367,691	+		CA265_RS09565	0.76	+0.0
2,367,692	-		CA265_RS09565	0.76	-0.8
2,367,710	+		CA265_RS09565	0.78	-0.8
2,367,719	+		CA265_RS09565	0.78	+0.8
2,367,719	+		CA265_RS09565	0.78	+0.2
2,367,719	+		CA265_RS09565	0.78	+1.1
2,367,720	-		CA265_RS09565	0.79	-0.7
2,367,721	+		CA265_RS09565	0.79	+0.1
2,367,782	+		CA265_RS09565	0.84	-0.5
2,367,782	+		CA265_RS09565	0.84	+0.7
2,367,881	-				-1.0
2,367,917	-				+0.4
2,367,971	+				+0.4
2,368,109	-		CA265_RS09570	0.15	-1.3
2,368,193	-		CA265_RS09570	0.30	-0.5
2,368,205	+		CA265_RS09570	0.33	-1.6
2,368,206	-		CA265_RS09570	0.33	-0.2
2,368,246	+		CA265_RS09570	0.40	-0.6
2,368,274	-		CA265_RS09570	0.46	-0.3
2,368,318	+		CA265_RS09570	0.54	-0.7
2,368,319	-		CA265_RS09570	0.54	+1.5
2,368,367	-		CA265_RS09570	0.63	-1.3
2,368,399	-		CA265_RS09570	0.69	+1.1
2,368,451	+		CA265_RS09570	0.79	+1.0
2,368,547	+				-1.2
2,368,560	+				-0.4
2,368,629	-				+0.3
2,368,638	-				-0.5
2,368,638	-				-0.9
2,368,685	+		CA265_RS09575	0.16	-0.5
2,368,698	+		CA265_RS09575	0.18	-1.2
2,368,772	+		CA265_RS09575	0.29	+0.3
2,368,790	+		CA265_RS09575	0.32	-0.5
2,368,790	+		CA265_RS09575	0.32	-0.2
2,368,791	-		CA265_RS09575	0.32	-0.3
2,368,791	-		CA265_RS09575	0.32	-1.4
2,368,791	-		CA265_RS09575	0.32	-0.0
2,368,822	-				+1.4
2,368,949	-		CA265_RS09575	0.56	+1.5