Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS08475

Experiment: R2A with Vancomycin 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.06 mg/ml
2,113,695	-		CA265_RS08470	0.38	+0.6
2,113,788	+		CA265_RS08470	0.45	-1.5
2,113,904	-		CA265_RS08470	0.53	+0.2
2,113,910	-		CA265_RS08470	0.54	-0.4
2,113,990	+		CA265_RS08470	0.60	+0.9
2,114,025	-		CA265_RS08470	0.62	+0.2
2,114,047	-		CA265_RS08470	0.64	-0.2
2,114,160	-		CA265_RS08470	0.73	+0.1
2,114,197	+		CA265_RS08470	0.75	+0.2
2,114,278	+		CA265_RS08470	0.81	-0.8
2,114,298	+		CA265_RS08470	0.83	-0.2
2,114,337	+		CA265_RS08470	0.86	-0.5
2,114,338	-		CA265_RS08470	0.86	-0.6
2,114,338	-		CA265_RS08470	0.86	-0.0
2,114,359	-		CA265_RS08470	0.87	+1.4
2,114,418	-				-0.5
2,114,578	+				+0.6
2,114,579	-				-0.8
2,114,579	-				+0.0
2,114,603	-				+0.1
2,114,604	+				+0.4
2,114,630	+				+1.7
2,114,631	-				-0.9
2,114,636	+				-0.2
2,114,636	+				-0.5
2,114,687	+				+0.8
2,114,784	-				-0.8
2,114,784	-				+0.3
2,114,965	+		CA265_RS08475	0.16	-0.4
2,115,088	+		CA265_RS08475	0.20	-0.9
2,115,088	+		CA265_RS08475	0.20	+0.2
2,115,088	+		CA265_RS08475	0.20	+0.2
2,115,089	-		CA265_RS08475	0.20	+0.4
2,115,309	+		CA265_RS08475	0.28	-0.8
2,115,392	-		CA265_RS08475	0.31	+0.7
2,115,409	+		CA265_RS08475	0.31	+0.1
2,115,409	+		CA265_RS08475	0.31	+1.4
2,115,409	+		CA265_RS08475	0.31	+0.9
2,115,410	-		CA265_RS08475	0.31	-0.3
2,115,410	-		CA265_RS08475	0.31	-0.9
2,115,412	-		CA265_RS08475	0.32	+0.9
2,115,412	-		CA265_RS08475	0.32	+0.4
2,115,416	-		CA265_RS08475	0.32	-1.3
2,115,611	-		CA265_RS08475	0.39	+0.4
2,115,613	+		CA265_RS08475	0.39	+2.7
2,115,642	+		CA265_RS08475	0.40	+0.1
2,115,796	+		CA265_RS08475	0.45	-0.5
2,115,871	-		CA265_RS08475	0.48	+0.2
2,116,051	+		CA265_RS08475	0.54	-0.6
2,116,051	+		CA265_RS08475	0.54	-1.1
2,116,052	-		CA265_RS08475	0.54	+4.0
2,116,135	+		CA265_RS08475	0.57	+0.8
2,116,193	+		CA265_RS08475	0.59	-0.8
2,116,193	+		CA265_RS08475	0.59	+1.4
2,116,195	+		CA265_RS08475	0.59	+0.4
2,116,217	+		CA265_RS08475	0.60	+0.2
2,116,388	-		CA265_RS08475	0.66	-0.5
2,116,421	+		CA265_RS08475	0.67	+1.4
2,116,422	-		CA265_RS08475	0.67	+0.3
2,116,441	+		CA265_RS08475	0.68	-0.5
2,116,449	-		CA265_RS08475	0.68	-0.6
2,116,688	-		CA265_RS08475	0.77	-0.2
2,116,723	-		CA265_RS08475	0.78	+1.7
2,116,723	-		CA265_RS08475	0.78	-1.0
2,116,779	+		CA265_RS08475	0.80	+0.4
2,116,780	-		CA265_RS08475	0.80	-2.6
2,116,780	-		CA265_RS08475	0.80	+0.6
2,116,794	+		CA265_RS08475	0.81	-0.8
2,116,795	-		CA265_RS08475	0.81	+0.2
2,116,795	-		CA265_RS08475	0.81	-1.1
2,116,799	+		CA265_RS08475	0.81	-0.4
2,116,858	-		CA265_RS08475	0.83	-1.2
2,116,986	+		CA265_RS08475	0.88	+0.0
2,117,001	+		CA265_RS08475	0.88	-1.7
2,117,001	+		CA265_RS08475	0.88	-0.6
2,117,002	-		CA265_RS08475	0.88	+0.3
2,117,002	-		CA265_RS08475	0.88	-0.4
2,117,056	-				-0.2
2,117,074	+				+1.4
2,117,075	-				+0.3
2,117,159	+				-0.8
2,117,222	+				-0.8
2,117,223	-				-0.4
2,117,357	+				+0.1
2,117,358	-				+0.1
2,117,358	-				+0.2
2,117,362	+				+0.5
2,117,363	-				+0.2
2,117,471	+				-0.9
2,117,472	-				+0.6
2,117,535	+				-0.8
2,117,538	+				-0.3
2,117,577	-				+0.8
2,117,580	+				+1.5
2,117,581	-				-0.2
2,117,820	+				-0.8
2,117,821	-				-0.1
2,117,844	+				+1.0
2,117,943	-		CA265_RS08480	0.13	+0.8
2,117,964	-		CA265_RS08480	0.14	+0.2
2,118,166	-		CA265_RS08480	0.22	-0.3
2,118,166	-		CA265_RS08480	0.22	+0.3
2,118,206	+		CA265_RS08480	0.23	-0.0
2,118,215	+		CA265_RS08480	0.23	+0.3
2,118,223	-		CA265_RS08480	0.24	-1.3
2,118,230	+		CA265_RS08480	0.24	+0.2
2,118,230	+		CA265_RS08480	0.24	-0.2