Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS08330

Experiment: R2A with Vancomycin 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.06 mg/ml
2,063,165	+				+0.4
2,063,170	+				+0.2
2,063,184	+				-1.2
2,063,185	-				+0.5
2,063,207	+				+0.0
2,063,213	-				+0.1
2,063,213	-				+1.6
2,063,263	+		CA265_RS08325	0.15	+0.4
2,063,299	+		CA265_RS08325	0.20	+0.1
2,063,347	-		CA265_RS08325	0.27	-0.8
2,063,442	+		CA265_RS08325	0.41	-0.2
2,063,473	-		CA265_RS08325	0.46	+2.2
2,063,604	+		CA265_RS08325	0.65	-0.4
2,063,604	+		CA265_RS08325	0.65	+0.6
2,063,618	-		CA265_RS08325	0.68	+0.8
2,063,637	+		CA265_RS08325	0.70	-0.4
2,063,681	+		CA265_RS08325	0.77	+0.1
2,063,742	+		CA265_RS08325	0.86	-0.8
2,063,742	+		CA265_RS08325	0.86	+0.3
2,063,744	+		CA265_RS08325	0.86	+1.2
2,063,757	+		CA265_RS08325	0.88	+1.4
2,063,762	+		CA265_RS08325	0.89	-0.3
2,063,830	-				+0.5
2,063,850	-				+0.3
2,063,904	+				+0.3
2,063,968	-				+0.6
2,063,990	+				+1.1
2,064,162	+				+0.6
2,064,187	-				-0.3
2,064,251	-		CA265_RS08330	0.11	+2.1
2,064,288	+		CA265_RS08330	0.14	+0.0
2,064,289	-		CA265_RS08330	0.14	-0.0
2,064,405	+		CA265_RS08330	0.24	-0.1
2,064,514	-		CA265_RS08330	0.34	-0.6
2,064,518	+		CA265_RS08330	0.34	+1.1
2,064,526	-		CA265_RS08330	0.35	+0.8
2,064,597	-		CA265_RS08330	0.41	+0.5
2,064,622	+		CA265_RS08330	0.43	+1.1
2,064,674	+		CA265_RS08330	0.47	+1.2
2,064,674	+		CA265_RS08330	0.47	-0.1
2,064,675	-		CA265_RS08330	0.48	-0.4
2,064,716	-		CA265_RS08330	0.51	+1.7
2,064,726	+		CA265_RS08330	0.52	+0.3
2,064,727	-		CA265_RS08330	0.52	-0.1
2,064,766	+		CA265_RS08330	0.55	-0.1
2,064,837	+		CA265_RS08330	0.62	+0.7
2,064,837	+		CA265_RS08330	0.62	-0.2
2,064,852	+		CA265_RS08330	0.63	+0.1
2,064,852	+		CA265_RS08330	0.63	+1.4
2,064,859	-		CA265_RS08330	0.64	-1.0
2,064,871	-		CA265_RS08330	0.65	-0.1
2,064,871	-		CA265_RS08330	0.65	-0.2
2,065,144	+		CA265_RS08330	0.88	+1.6
2,065,228	-				-1.2
2,065,261	+				+0.5
2,065,282	+				+3.1
2,065,282	+				-0.6
2,065,283	-				+1.2
2,065,382	+				+0.0
2,065,390	+				-0.5
2,065,430	-				-1.1
2,065,430	-				+0.7
2,065,451	-				+0.7
2,065,467	+				-0.5
2,065,474	-				-0.6
2,065,514	+		CA265_RS08335	0.11	-0.1
2,065,591	-		CA265_RS08335	0.18	+0.8
2,065,591	-		CA265_RS08335	0.18	+0.2
2,065,625	+		CA265_RS08335	0.21	+1.4
2,065,625	+		CA265_RS08335	0.21	+0.3
2,065,625	+		CA265_RS08335	0.21	-0.5
2,065,626	-		CA265_RS08335	0.21	+0.6
2,065,626	-		CA265_RS08335	0.21	-0.3
2,065,626	-		CA265_RS08335	0.21	+1.2
2,065,626	-		CA265_RS08335	0.21	+1.5
2,065,628	-		CA265_RS08335	0.21	+0.9
2,065,711	+		CA265_RS08335	0.28	+0.2
2,065,746	+		CA265_RS08335	0.31	+0.7
2,065,746	+		CA265_RS08335	0.31	+0.7
2,065,891	-		CA265_RS08335	0.44	+0.5
2,065,892	+		CA265_RS08335	0.44	-0.1
2,066,002	-		CA265_RS08335	0.53	+1.4
2,066,027	+		CA265_RS08335	0.55	-0.2
2,066,098	+		CA265_RS08335	0.61	-1.1
2,066,099	-		CA265_RS08335	0.61	+1.1
2,066,103	+		CA265_RS08335	0.62	-0.0
2,066,103	+		CA265_RS08335	0.62	+0.1
2,066,104	-		CA265_RS08335	0.62	+0.6
2,066,135	+		CA265_RS08335	0.64	+0.5
2,066,164	+		CA265_RS08335	0.67	+1.3
2,066,165	-		CA265_RS08335	0.67	-0.5
2,066,174	-		CA265_RS08335	0.68	+0.7
2,066,187	+		CA265_RS08335	0.69	+0.2
2,066,188	-		CA265_RS08335	0.69	+0.0
2,066,202	+		CA265_RS08335	0.70	-0.2
2,066,206	+		CA265_RS08335	0.71	+0.3
2,066,211	+				+0.1
2,066,230	-		CA265_RS08335	0.73	-1.1