Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS08055

Experiment: R2A with Vancomycin 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.06 mg/ml
2,004,452	+				+0.2
2,004,524	-				-0.1
2,004,526	+				+0.5
2,004,526	+				-0.1
2,004,527	-				-0.4
2,004,527	-				+0.7
2,004,605	+				-1.0
2,004,689	-		CA265_RS08050	0.10	-0.8
2,004,776	+		CA265_RS08050	0.26	+0.5
2,004,832	+		CA265_RS08050	0.36	+0.5
2,004,960	+		CA265_RS08050	0.60	+0.2
2,004,968	-		CA265_RS08050	0.61	-0.4
2,004,994	+		CA265_RS08050	0.66	+0.3
2,005,063	+		CA265_RS08050	0.79	+0.6
2,005,188	-				-0.5
2,005,195	-				-1.3
2,005,217	+				-0.2
2,005,350	-				+0.9
2,005,418	-				-0.4
2,005,419	+				-0.0
2,005,419	+				-0.8
2,005,419	+				-1.7
2,005,420	-				+0.3
2,005,420	-				-0.2
2,005,420	-				-0.5
2,005,423	+				+0.3
2,005,425	+				-0.1
2,005,481	-				-1.2
2,005,575	-		CA265_RS08055	0.15	-0.2
2,005,575	-		CA265_RS08055	0.15	+0.6
2,005,580	-		CA265_RS08055	0.16	+0.8
2,005,650	+		CA265_RS08055	0.24	+0.5
2,005,650	+		CA265_RS08055	0.24	-0.5
2,005,742	+		CA265_RS08055	0.35	+0.4
2,005,742	+		CA265_RS08055	0.35	+1.0
2,005,747	-		CA265_RS08055	0.36	+1.4
2,005,748	+		CA265_RS08055	0.36	-0.5
2,005,748	+		CA265_RS08055	0.36	+2.4
2,005,760	+		CA265_RS08055	0.38	-0.5
2,005,879	+		CA265_RS08055	0.52	+2.1
2,005,979	-		CA265_RS08055	0.64	-0.3
2,006,007	-		CA265_RS08055	0.67	-2.1
2,006,007	-		CA265_RS08055	0.67	-0.2
2,006,075	+		CA265_RS08055	0.75	-1.7
2,006,140	-		CA265_RS08055	0.83	-0.5
2,006,141	+		CA265_RS08055	0.83	+1.5
2,006,294	-				+0.7
2,006,318	+				-0.2
2,006,351	-				+1.6
2,006,351	-				+1.6
2,006,354	-				+0.0
2,006,443	+				+0.8
2,006,444	-				-0.2
2,006,444	-				-0.5
2,006,450	-				+0.1
2,006,451	+				-1.0
2,006,455	+				+0.1
2,006,467	-				+0.3
2,006,512	-				-0.1
2,006,512	-				-1.2
2,006,630	-				-0.8
2,006,630	-				-0.6
2,006,633	-				-0.3
2,006,633	-				+1.6
2,006,642	+				-0.5
2,006,763	+		CA265_RS08060	0.41	+0.3
2,006,840	-		CA265_RS08060	0.66	+0.2
2,006,897	+		CA265_RS08060	0.84	+0.8
2,006,952	+				+0.8
2,006,990	+				+0.6
2,006,999	-				-0.2
2,006,999	-				+0.6
2,007,005	+				+0.3
2,007,006	-				+0.1
2,007,033	+				+0.4
2,007,034	-				+0.6
2,007,062	+				+0.6
2,007,063	-				+0.2
2,007,072	+				-1.2
2,007,073	-				+1.1
2,007,102	-		CA265_RS08065	0.13	-0.3
2,007,102	-		CA265_RS08065	0.13	-0.7
2,007,130	-		CA265_RS08065	0.18	-0.6
2,007,230	-		CA265_RS08065	0.33	-0.7
2,007,239	-		CA265_RS08065	0.34	-0.3
2,007,239	-		CA265_RS08065	0.34	-0.3
2,007,242	-		CA265_RS08065	0.35	-1.0
2,007,253	-		CA265_RS08065	0.37	+0.2