Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS06905

Experiment: R2A with Vancomycin 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.06 mg/ml
1,715,728	+		CA265_RS06895	0.60	+1.4
1,715,730	+		CA265_RS06895	0.61	-1.8
1,715,750	-		CA265_RS06895	0.62	-0.4
1,715,750	-		CA265_RS06895	0.62	+0.6
1,715,750	-		CA265_RS06895	0.62	-1.1
1,715,794	-		CA265_RS06895	0.66	+0.3
1,715,797	-		CA265_RS06895	0.66	-0.2
1,715,797	-		CA265_RS06895	0.66	-2.1
1,715,797	-		CA265_RS06895	0.66	+0.8
1,715,855	-		CA265_RS06895	0.72	-1.1
1,715,855	-		CA265_RS06895	0.72	+0.7
1,715,855	-		CA265_RS06895	0.72	-2.0
1,716,000	-		CA265_RS06895	0.84	-1.8
1,716,016	-		CA265_RS06895	0.86	-0.2
1,716,029	-		CA265_RS06895	0.87	-2.1
1,716,110	-				+0.5
1,716,132	+				-0.6
1,716,151	-				-0.1
1,716,223	-		CA265_RS06900	0.12	-1.1
1,716,255	-		CA265_RS06900	0.26	-0.6
1,716,266	+		CA265_RS06900	0.31	-0.7
1,716,267	-		CA265_RS06900	0.31	-0.3
1,716,298	+		CA265_RS06900	0.45	-0.3
1,716,414	+				-0.1
1,716,445	+				+0.6
1,716,446	-				-1.4
1,716,449	-				-0.1
1,716,511	+				+0.6
1,716,514	-				+0.0
1,716,604	+				+0.6
1,716,605	-				+0.6
1,716,694	-				-1.7
1,716,694	-				-0.3
1,716,858	+		CA265_RS06905	0.11	-0.8
1,716,861	-		CA265_RS06905	0.11	-2.0
1,716,864	-		CA265_RS06905	0.12	+0.2
1,716,864	-		CA265_RS06905	0.12	-1.1
1,716,864	-		CA265_RS06905	0.12	-0.4
1,716,867	+		CA265_RS06905	0.12	+0.9
1,716,884	+		CA265_RS06905	0.13	-1.1
1,716,885	-		CA265_RS06905	0.13	-0.7
1,716,918	+		CA265_RS06905	0.16	-1.2
1,716,998	-		CA265_RS06905	0.23	-0.9
1,717,005	-		CA265_RS06905	0.23	+0.0
1,717,005	-		CA265_RS06905	0.23	-1.6
1,717,037	+		CA265_RS06905	0.26	-0.9
1,717,037	+		CA265_RS06905	0.26	-2.2
1,717,037	+		CA265_RS06905	0.26	-1.6
1,717,055	+		CA265_RS06905	0.27	-1.3
1,717,072	+		CA265_RS06905	0.29	-2.6
1,717,098	-		CA265_RS06905	0.31	-1.2
1,717,109	+		CA265_RS06905	0.32	-1.1
1,717,110	-		CA265_RS06905	0.32	-0.9
1,717,110	-		CA265_RS06905	0.32	-1.2
1,717,191	-		CA265_RS06905	0.39	-1.0
1,717,198	+		CA265_RS06905	0.39	+0.7
1,717,217	-		CA265_RS06905	0.41	-1.0
1,717,266	-		CA265_RS06905	0.45	-1.8
1,717,279	+		CA265_RS06905	0.46	-0.6
1,717,346	-		CA265_RS06905	0.51	-0.7
1,717,397	+		CA265_RS06905	0.56	-2.2
1,717,436	+		CA265_RS06905	0.59	-1.2
1,717,437	-		CA265_RS06905	0.59	-0.8
1,717,457	-		CA265_RS06905	0.61	-1.4
1,717,460	+		CA265_RS06905	0.61	-0.8
1,717,460	+		CA265_RS06905	0.61	-0.3
1,717,461	-		CA265_RS06905	0.61	-0.1
1,717,544	-		CA265_RS06905	0.68	-2.4
1,717,547	+		CA265_RS06905	0.68	+0.5
1,717,548	-		CA265_RS06905	0.68	-1.5
1,717,548	-		CA265_RS06905	0.68	-1.6
1,717,548	-		CA265_RS06905	0.68	-1.8
1,717,548	-		CA265_RS06905	0.68	-2.3
1,717,678	+		CA265_RS06905	0.79	-0.7
1,717,679	-		CA265_RS06905	0.79	-0.5
1,717,696	-		CA265_RS06905	0.80	-1.7
1,717,712	+		CA265_RS06905	0.82	-0.7
1,717,859	+				-1.3
1,717,860	-				-1.1
1,717,962	+				-1.0
1,718,036	+				+0.1
1,718,049	+				+0.1
1,718,101	+		CA265_RS06910	0.36	-1.4
1,718,113	+		CA265_RS06910	0.42	-0.7
1,718,114	-		CA265_RS06910	0.43	-0.3
1,718,382	+				-0.7
1,718,468	+				-0.4
1,718,470	+				+0.3
1,718,488	+				-0.6
1,718,544	-		CA265_RS06915	0.12	+0.3
1,718,544	-		CA265_RS06915	0.12	+0.7
1,718,544	-		CA265_RS06915	0.12	-1.2
1,718,592	+		CA265_RS06915	0.14	+0.3
1,718,713	+		CA265_RS06915	0.18	+0.3
1,718,713	+		CA265_RS06915	0.18	-1.0
1,718,724	-		CA265_RS06915	0.19	-0.3
1,718,724	-		CA265_RS06915	0.19	+1.3
1,718,733	+		CA265_RS06915	0.19	-0.4
1,718,733	+		CA265_RS06915	0.19	+0.4
1,718,755	+		CA265_RS06915	0.20	+1.8
1,718,756	-		CA265_RS06915	0.20	-0.3
1,718,911	-		CA265_RS06915	0.25	-1.3