Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS06700

Experiment: R2A with Vancomycin 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.06 mg/ml
1,652,676	+		CA265_RS06695	0.10	+0.7
1,652,724	+		CA265_RS06695	0.15	+0.1
1,652,725	-		CA265_RS06695	0.15	+0.6
1,652,776	+		CA265_RS06695	0.21	+1.3
1,652,777	-		CA265_RS06695	0.21	-0.3
1,652,864	+		CA265_RS06695	0.30	+1.3
1,652,865	-		CA265_RS06695	0.30	+0.5
1,652,899	+		CA265_RS06695	0.33	+1.2
1,652,912	+		CA265_RS06695	0.35	+1.8
1,652,917	+		CA265_RS06695	0.35	+0.9
1,652,918	-		CA265_RS06695	0.35	-2.1
1,652,922	+		CA265_RS06695	0.36	+1.2
1,652,960	-		CA265_RS06695	0.40	+0.0
1,653,004	+		CA265_RS06695	0.44	+1.4
1,653,032	-		CA265_RS06695	0.47	-0.3
1,653,046	+		CA265_RS06695	0.49	+3.0
1,653,061	-		CA265_RS06695	0.50	+0.0
1,653,064	+		CA265_RS06695	0.51	+1.5
1,653,064	+		CA265_RS06695	0.51	+1.2
1,653,064	+		CA265_RS06695	0.51	+1.9
1,653,065	-		CA265_RS06695	0.51	+1.6
1,653,065	-		CA265_RS06695	0.51	+0.4
1,653,070	+		CA265_RS06695	0.51	+2.1
1,653,211	+		CA265_RS06695	0.66	+2.1
1,653,259	-		CA265_RS06695	0.71	+1.7
1,653,283	+		CA265_RS06695	0.73	+0.7
1,653,320	-		CA265_RS06695	0.77	+0.1
1,653,355	+		CA265_RS06695	0.81	+2.6
1,653,373	+		CA265_RS06695	0.83	+1.9
1,653,401	+		CA265_RS06695	0.86	+0.7
1,653,402	-		CA265_RS06695	0.86	+0.7
1,653,491	+				+0.8
1,653,491	+				+1.1
1,653,536	+				+1.2
1,653,564	-				+0.5
1,653,616	+				-0.3
1,653,686	-				-0.6
1,653,692	-				-1.3
1,653,692	-				+2.8
1,653,701	-				-0.4
1,653,706	+				+0.1
1,653,742	+				-1.2
1,653,773	+				-0.3
1,653,773	+				-0.4
1,653,774	-				+0.3
1,653,778	+				-1.3
1,653,782	+				+0.1
1,653,838	+		CA265_RS06700	0.11	+0.2
1,653,839	-		CA265_RS06700	0.11	+0.0
1,653,905	+		CA265_RS06700	0.15	+0.3
1,653,906	-		CA265_RS06700	0.15	-0.0
1,653,906	-		CA265_RS06700	0.15	-0.0
1,653,906	-		CA265_RS06700	0.15	+1.5
1,653,906	-		CA265_RS06700	0.15	+0.5
1,653,907	+		CA265_RS06700	0.16	-0.6
1,653,951	-		CA265_RS06700	0.18	-0.0
1,653,986	-		CA265_RS06700	0.21	+0.4
1,654,043	+		CA265_RS06700	0.25	-0.5
1,654,043	+		CA265_RS06700	0.25	+0.6
1,654,044	-				+0.4
1,654,118	+		CA265_RS06700	0.29	+1.0
1,654,119	-		CA265_RS06700	0.30	+0.7
1,654,157	+		CA265_RS06700	0.32	+0.5
1,654,157	+		CA265_RS06700	0.32	+0.4
1,654,158	-		CA265_RS06700	0.32	+1.5
1,654,160	+		CA265_RS06700	0.32	-0.1
1,654,171	-		CA265_RS06700	0.33	+1.1
1,654,185	+		CA265_RS06700	0.34	-0.4
1,654,185	+		CA265_RS06700	0.34	+0.3
1,654,186	-		CA265_RS06700	0.34	+0.1
1,654,191	-		CA265_RS06700	0.34	+0.4
1,654,194	+		CA265_RS06700	0.35	+0.3
1,654,210	+		CA265_RS06700	0.36	+0.1
1,654,230	+		CA265_RS06700	0.37	+0.8
1,654,236	-		CA265_RS06700	0.37	-0.8
1,654,240	+		CA265_RS06700	0.38	-0.0
1,654,241	-		CA265_RS06700	0.38	+0.4
1,654,320	-		CA265_RS06700	0.43	+1.3
1,654,375	+		CA265_RS06700	0.46	+0.6
1,654,376	-		CA265_RS06700	0.47	+0.4
1,654,384	+		CA265_RS06700	0.47	-0.2
1,654,403	-		CA265_RS06700	0.48	+0.1
1,654,483	+		CA265_RS06700	0.54	-0.4
1,654,484	-		CA265_RS06700	0.54	+2.0
1,654,484	-		CA265_RS06700	0.54	+1.0
1,654,668	+		CA265_RS06700	0.66	+0.1
1,654,669	-		CA265_RS06700	0.66	-0.8
1,654,669	-		CA265_RS06700	0.66	+0.6
1,654,669	-		CA265_RS06700	0.66	+0.2
1,654,669	-		CA265_RS06700	0.66	-0.3
1,654,674	-		CA265_RS06700	0.66	-1.1
1,654,681	+		CA265_RS06700	0.67	-0.8
1,654,682	-		CA265_RS06700	0.67	+1.7
1,654,710	-		CA265_RS06700	0.69	+0.3
1,654,878	+		CA265_RS06700	0.80	-0.3
1,654,878	+		CA265_RS06700	0.80	+0.7
1,654,879	-		CA265_RS06700	0.80	+1.4
1,654,879	-		CA265_RS06700	0.80	-1.5
1,654,879	-		CA265_RS06700	0.80	-0.6
1,654,879	-		CA265_RS06700	0.80	-0.5
1,654,879	-		CA265_RS06700	0.80	+0.3
1,654,901	+		CA265_RS06700	0.81	-0.4
1,654,902	-		CA265_RS06700	0.81	+0.8
1,654,940	-		CA265_RS06700	0.84	+0.6
1,654,951	+		CA265_RS06700	0.85	+0.0
1,655,022	-		CA265_RS06700	0.89	-0.2
1,655,057	-				-0.6
1,655,057	-				-0.8
1,655,063	+				-0.6
1,655,064	-				+0.9
1,655,091	-				-0.0
1,655,277	-				+0.6
1,655,281	-				-0.2
1,655,310	+				+2.0
1,655,310	+				+0.1
1,655,315	-		CA265_RS06705	0.11	-0.7
1,655,344	+		CA265_RS06705	0.22	+0.5
1,655,349	+		CA265_RS06705	0.24	-0.6
1,655,362	+		CA265_RS06705	0.29	+0.1
1,655,422	+		CA265_RS06705	0.51	-1.7
1,655,423	-		CA265_RS06705	0.51	+0.2
1,655,432	+				+0.4
1,655,435	+		CA265_RS06705	0.56	+0.9
1,655,435	+		CA265_RS06705	0.56	-2.2
1,655,504	+		CA265_RS06705	0.81	-0.2
1,655,505	-		CA265_RS06705	0.82	+0.7
1,655,605	+				+1.2
1,655,605	+				+0.1
1,655,624	+				-0.1
1,655,625	-				-0.2
1,655,625	-				-0.3
1,655,633	+				+0.0
1,655,634	-				-0.5
1,655,735	-				+0.4
1,655,760	+				+0.2
1,655,760	+				+0.7
1,655,761	-				-1.7
1,655,765	+				-0.4
1,655,791	+				+0.0
1,655,792	-		CA265_RS06710	0.10	+0.2
1,655,794	-		CA265_RS06710	0.11	+0.0
1,655,796	+		CA265_RS06710	0.11	+0.2
1,655,796	+		CA265_RS06710	0.11	+0.6
1,655,829	+		CA265_RS06710	0.19	-0.2
1,655,863	-		CA265_RS06710	0.27	+0.1
1,655,889	-		CA265_RS06710	0.33	-0.2
1,655,908	-		CA265_RS06710	0.38	-0.3
1,655,930	+		CA265_RS06710	0.43	+0.2
1,655,935	-		CA265_RS06710	0.44	-0.4
1,655,935	-		CA265_RS06710	0.44	-0.3
1,656,010	-		CA265_RS06710	0.62	-0.1
1,656,063	-		CA265_RS06710	0.74	+0.6
1,656,066	-		CA265_RS06710	0.75	+1.3
1,656,078	-		CA265_RS06710	0.78	-0.1
1,656,096	-		CA265_RS06710	0.82	-0.8
1,656,096	-		CA265_RS06710	0.82	+0.4
1,656,173	+				-2.5