Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS06360

Experiment: R2A with Vancomycin 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.06 mg/ml
1,559,026	-		CA265_RS06350	0.80	-0.2
1,559,093	+		CA265_RS06350	0.88	-0.1
1,559,093	+		CA265_RS06350	0.88	-1.1
1,559,094	-		CA265_RS06350	0.88	-1.3
1,559,176	+				+0.1
1,559,177	-				-0.1
1,559,256	-		CA265_RS06355	0.12	-0.0
1,559,256	-		CA265_RS06355	0.12	-0.4
1,559,275	-		CA265_RS06355	0.15	-1.0
1,559,275	-		CA265_RS06355	0.15	+0.9
1,559,275	-		CA265_RS06355	0.15	+0.2
1,559,305	+		CA265_RS06355	0.19	-1.8
1,559,356	-		CA265_RS06355	0.27	-0.8
1,559,359	+		CA265_RS06355	0.28	-2.4
1,559,379	-		CA265_RS06355	0.31	-0.1
1,559,419	-		CA265_RS06355	0.37	+0.0
1,559,422	+		CA265_RS06355	0.37	-0.5
1,559,423	-		CA265_RS06355	0.37	-1.6
1,559,423	-		CA265_RS06355	0.37	+0.7
1,559,423	-		CA265_RS06355	0.37	-0.6
1,559,424	+		CA265_RS06355	0.37	-0.3
1,559,458	+		CA265_RS06355	0.43	-1.1
1,559,459	-		CA265_RS06355	0.43	-2.0
1,559,492	+		CA265_RS06355	0.48	-1.5
1,559,544	+		CA265_RS06355	0.56	-1.1
1,559,545	-		CA265_RS06355	0.56	-1.1
1,559,559	-		CA265_RS06355	0.58	+1.0
1,559,559	-		CA265_RS06355	0.58	-1.0
1,559,565	-		CA265_RS06355	0.59	-0.7
1,559,737	+		CA265_RS06355	0.85	-0.6
1,559,738	-		CA265_RS06355	0.85	-0.9
1,559,824	-				-0.7
1,559,865	+				-3.1
1,559,866	-				-0.1
1,559,872	-				-1.6
1,559,913	-				-0.5
1,559,937	+				-2.6
1,559,956	-				-0.4
1,559,960	+				-2.6
1,559,961	-				-0.7
1,559,982	+				-2.9
1,560,020	+				-0.9
1,560,021	-				-1.2
1,560,041	+				-2.9
1,560,041	+				-2.0
1,560,041	+				-2.0
1,560,042	-				-1.9
1,560,086	-				-0.7
1,560,116	+				-3.9
1,560,116	+				-2.5
1,560,116	+				-2.1
1,560,117	-				-0.2
1,560,120	+				-1.2
1,560,121	-				-3.4
1,560,148	+		CA265_RS06360	0.11	-1.2
1,560,216	+		CA265_RS06360	0.16	-1.8
1,560,275	+		CA265_RS06360	0.20	-0.6
1,560,276	-		CA265_RS06360	0.20	-2.5
1,560,278	-		CA265_RS06360	0.20	-0.6
1,560,317	+		CA265_RS06360	0.22	-1.6
1,560,319	-		CA265_RS06360	0.23	-2.9
1,560,359	-		CA265_RS06360	0.25	-0.6
1,560,363	+		CA265_RS06360	0.25	-2.7
1,560,364	-		CA265_RS06360	0.26	-2.4
1,560,368	-		CA265_RS06360	0.26	-0.8
1,560,396	-		CA265_RS06360	0.28	-0.2
1,560,402	+		CA265_RS06360	0.28	-2.1
1,560,402	+		CA265_RS06360	0.28	-0.7
1,560,403	-				-0.4
1,560,405	+		CA265_RS06360	0.28	-2.0
1,560,405	+		CA265_RS06360	0.28	-2.7
1,560,440	+		CA265_RS06360	0.31	-1.7
1,560,444	+		CA265_RS06360	0.31	-3.3
1,560,445	-		CA265_RS06360	0.31	-2.6
1,560,461	+		CA265_RS06360	0.32	-3.2
1,560,461	+		CA265_RS06360	0.32	-1.3
1,560,461	+		CA265_RS06360	0.32	-2.0
1,560,466	+		CA265_RS06360	0.32	-3.7
1,560,470	+		CA265_RS06360	0.32	-2.6
1,560,545	+		CA265_RS06360	0.37	-1.5
1,560,545	+		CA265_RS06360	0.37	-2.7
1,560,545	+		CA265_RS06360	0.37	-2.4
1,560,546	-		CA265_RS06360	0.37	-1.9
1,560,594	+		CA265_RS06360	0.41	-1.2
1,560,630	+		CA265_RS06360	0.43	-2.6
1,560,680	+		CA265_RS06360	0.46	-2.2
1,560,682	+		CA265_RS06360	0.46	-0.6
1,560,700	+		CA265_RS06360	0.48	-2.4
1,560,715	-		CA265_RS06360	0.48	-0.6
1,560,715	-		CA265_RS06360	0.48	-3.8
1,560,807	-		CA265_RS06360	0.55	-2.8
1,560,809	-		CA265_RS06360	0.55	-2.9
1,560,811	-		CA265_RS06360	0.55	-2.0
1,560,907	+		CA265_RS06360	0.61	-1.1
1,560,957	+		CA265_RS06360	0.64	-2.9
1,561,020	+		CA265_RS06360	0.68	-1.4
1,561,020	+		CA265_RS06360	0.68	-1.2
1,561,021	-		CA265_RS06360	0.68	-2.5
1,561,021	-		CA265_RS06360	0.68	-1.9
1,561,021	-		CA265_RS06360	0.68	-1.2
1,561,024	+		CA265_RS06360	0.69	-3.8
1,561,024	+		CA265_RS06360	0.69	-2.6
1,561,035	-		CA265_RS06360	0.69	-0.3
1,561,044	-		CA265_RS06360	0.70	-0.6
1,561,050	-		CA265_RS06360	0.70	-1.4
1,561,050	-		CA265_RS06360	0.70	-1.5
1,561,064	-		CA265_RS06360	0.71	-2.7
1,561,074	-		CA265_RS06360	0.72	-1.8
1,561,078	-		CA265_RS06360	0.72	-1.5
1,561,089	-		CA265_RS06360	0.73	-0.1
1,561,099	+		CA265_RS06360	0.74	-2.5
1,561,099	+		CA265_RS06360	0.74	-3.4
1,561,119	-		CA265_RS06360	0.75	-1.2
1,561,176	+		CA265_RS06360	0.79	-3.2
1,561,188	-		CA265_RS06360	0.79	-2.9
1,561,190	+		CA265_RS06360	0.80	+1.2
1,561,199	+		CA265_RS06360	0.80	-2.4
1,561,224	-		CA265_RS06360	0.82	-2.9
1,561,274	+		CA265_RS06360	0.85	-2.0
1,561,396	+				-1.9
1,561,396	+				-3.3
1,561,432	+				-1.5
1,561,433	-				-1.5
1,561,465	-				-2.8
1,561,470	-				-1.6
1,561,477	-				-1.6
1,561,486	-				-0.9
1,561,663	+		CA265_RS06365	0.14	-1.7
1,561,666	-		CA265_RS06365	0.14	-1.1
1,561,666	-		CA265_RS06365	0.14	+0.1
1,561,712	-		CA265_RS06365	0.18	-4.1
1,561,713	+		CA265_RS06365	0.19	-2.1
1,561,713	+		CA265_RS06365	0.19	-0.9
1,561,713	+		CA265_RS06365	0.19	-1.9
1,561,713	+		CA265_RS06365	0.19	-2.4
1,561,764	+		CA265_RS06365	0.24	-2.1
1,561,807	+		CA265_RS06365	0.28	-2.1
1,561,845	-		CA265_RS06365	0.31	-1.0
1,561,886	-		CA265_RS06365	0.35	-2.6
1,561,896	+		CA265_RS06365	0.36	-2.2
1,561,896	+		CA265_RS06365	0.36	-1.3
1,561,897	-		CA265_RS06365	0.37	-2.2
1,561,975	-		CA265_RS06365	0.44	-1.5
1,562,011	-		CA265_RS06365	0.48	-1.4
1,562,040	+		CA265_RS06365	0.51	-2.4
1,562,040	+		CA265_RS06365	0.51	-2.7
1,562,126	-		CA265_RS06365	0.59	-2.7
1,562,143	+		CA265_RS06365	0.61	-2.0
1,562,196	-		CA265_RS06365	0.66	-2.4
1,562,196	-		CA265_RS06365	0.66	-1.6
1,562,199	+		CA265_RS06365	0.66	-1.2
1,562,200	-		CA265_RS06365	0.66	-0.2
1,562,215	-		CA265_RS06365	0.68	-4.7
1,562,253	+		CA265_RS06365	0.71	-2.5
1,562,254	-		CA265_RS06365	0.71	-1.6
1,562,269	+		CA265_RS06365	0.73	-1.9
1,562,272	-		CA265_RS06365	0.73	-2.1
1,562,297	-		CA265_RS06365	0.76	-1.3
1,562,304	+		CA265_RS06365	0.76	-3.4
1,562,312	-		CA265_RS06365	0.77	-3.7
1,562,317	-		CA265_RS06365	0.78	-2.0
1,562,341	-		CA265_RS06365	0.80	-1.9
1,562,406	-		CA265_RS06365	0.86	-1.3
1,562,420	-		CA265_RS06365	0.88	-2.7
1,562,437	+		CA265_RS06365	0.89	-3.6
1,562,437	+		CA265_RS06365	0.89	-2.4
1,562,458	+				-0.8
1,562,459	-				-3.7
1,562,480	-				-1.9
1,562,480	-				+1.4