Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS05975

Experiment: R2A with Vancomycin 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.06 mg/ml
1,470,344	+		CA265_RS05970	0.25	-1.7
1,470,352	-		CA265_RS05970	0.25	+0.0
1,470,444	+		CA265_RS05970	0.34	+0.6
1,470,444	+		CA265_RS05970	0.34	-0.4
1,470,487	-		CA265_RS05970	0.38	-1.3
1,470,504	+		CA265_RS05970	0.39	+0.9
1,470,624	-		CA265_RS05970	0.50	+0.0
1,470,643	+		CA265_RS05970	0.52	+0.8
1,470,675	-		CA265_RS05970	0.55	-0.6
1,470,685	+		CA265_RS05970	0.55	+0.2
1,470,735	+		CA265_RS05970	0.60	+0.8
1,470,740	+		CA265_RS05970	0.60	-2.6
1,470,751	-		CA265_RS05970	0.61	+0.8
1,470,816	+		CA265_RS05970	0.67	-0.4
1,470,817	-		CA265_RS05970	0.67	+0.2
1,470,832	-		CA265_RS05970	0.69	-2.0
1,470,902	-		CA265_RS05970	0.75	-1.6
1,470,902	-		CA265_RS05970	0.75	+0.5
1,470,922	-		CA265_RS05970	0.77	-1.8
1,470,957	+		CA265_RS05970	0.80	-1.2
1,470,979	+		CA265_RS05970	0.82	+0.1
1,471,021	+		CA265_RS05970	0.86	+0.5
1,471,021	+		CA265_RS05970	0.86	-0.3
1,471,021	+		CA265_RS05970	0.86	-1.6
1,471,021	+		CA265_RS05970	0.86	-0.4
1,471,022	-		CA265_RS05970	0.86	-0.5
1,471,192	-				+0.2
1,471,192	-				+0.9
1,471,192	-				+0.7
1,471,204	+				+0.6
1,471,212	-				+0.0
1,471,212	-				-1.9
1,471,212	-				+0.5
1,471,212	-				-2.3
1,471,221	+				+0.5
1,471,222	-				+0.5
1,471,233	-				+0.2
1,471,254	+				+0.3
1,471,343	-				+0.8
1,471,385	-				+0.9
1,471,385	-				+0.4
1,471,429	+				+0.1
1,471,499	-				+0.3
1,471,552	+		CA265_RS05975	0.11	-0.3
1,471,552	+		CA265_RS05975	0.11	-0.6
1,471,556	+		CA265_RS05975	0.11	+0.4
1,471,557	-		CA265_RS05975	0.11	-0.1
1,471,578	-		CA265_RS05975	0.12	-0.0
1,471,597	-		CA265_RS05975	0.13	-0.6
1,471,619	+		CA265_RS05975	0.14	-0.1
1,471,698	-		CA265_RS05975	0.17	-0.2
1,471,710	+		CA265_RS05975	0.18	+1.0
1,471,731	+		CA265_RS05975	0.19	-0.5
1,471,950	-		CA265_RS05975	0.29	+0.2
1,472,093	+		CA265_RS05975	0.36	+0.4
1,472,093	+		CA265_RS05975	0.36	+0.1
1,472,094	-		CA265_RS05975	0.36	-0.0
1,472,114	-		CA265_RS05975	0.37	-0.9
1,472,114	-		CA265_RS05975	0.37	-0.2
1,472,166	+		CA265_RS05975	0.39	+0.1
1,472,178	+		CA265_RS05975	0.40	-0.1
1,472,179	-				+0.4
1,472,230	-		CA265_RS05975	0.42	+1.0
1,472,260	-		CA265_RS05975	0.43	-0.5
1,472,275	-		CA265_RS05975	0.44	+0.4
1,472,294	-		CA265_RS05975	0.45	+0.8
1,472,349	-		CA265_RS05975	0.47	-0.0
1,472,676	+		CA265_RS05975	0.62	-0.4
1,472,724	+		CA265_RS05975	0.65	+0.4
1,472,747	-		CA265_RS05975	0.66	+0.4
1,472,747	-		CA265_RS05975	0.66	-0.1
1,472,788	-		CA265_RS05975	0.68	-1.1
1,472,792	-		CA265_RS05975	0.68	-0.5
1,472,806	+		CA265_RS05975	0.68	+0.3
1,472,883	-		CA265_RS05975	0.72	+0.5
1,472,887	+		CA265_RS05975	0.72	-0.2
1,472,888	-		CA265_RS05975	0.72	+0.6
1,472,888	-		CA265_RS05975	0.72	-0.1
1,472,974	+		CA265_RS05975	0.76	+1.0
1,473,034	-		CA265_RS05975	0.79	-0.0
1,473,139	+		CA265_RS05975	0.84	+0.4
1,473,140	-		CA265_RS05975	0.84	-1.8
1,473,166	+		CA265_RS05975	0.85	+0.9
1,473,166	+		CA265_RS05975	0.85	-0.1
1,473,166	+		CA265_RS05975	0.85	+1.0
1,473,167	-		CA265_RS05975	0.85	-1.2
1,473,167	-		CA265_RS05975	0.85	+1.0
1,473,223	+		CA265_RS05975	0.88	-0.6
1,473,223	+		CA265_RS05975	0.88	+0.5
1,473,224	-		CA265_RS05975	0.88	-0.2
1,473,224	-		CA265_RS05975	0.88	-1.4
1,473,224	-		CA265_RS05975	0.88	-0.8
1,473,224	-		CA265_RS05975	0.88	-0.5
1,473,244	-		CA265_RS05975	0.89	+0.1
1,473,297	+				-0.4
1,473,297	+				+0.0
1,473,467	+				+0.4
1,473,467	+				+0.8
1,473,468	-				-0.5
1,473,487	+				+0.2
1,473,487	+				+1.2
1,473,506	-				+0.9
1,473,652	+		CA265_RS05980	0.40	-1.2
1,473,652	+		CA265_RS05980	0.40	-0.4
1,473,653	-		CA265_RS05980	0.40	+0.4
1,473,685	+		CA265_RS05980	0.48	-0.4
1,473,733	-		CA265_RS05980	0.59	+1.1
1,473,733	-		CA265_RS05980	0.59	+1.1
1,473,733	-		CA265_RS05980	0.59	+0.8
1,473,733	-		CA265_RS05980	0.59	+0.4
1,473,736	+		CA265_RS05980	0.60	+0.5
1,473,736	+		CA265_RS05980	0.60	-0.3
1,473,813	-		CA265_RS05980	0.78	-0.6
1,473,903	-				+0.2
1,474,094	-				+0.3
1,474,097	+				+0.4
1,474,099	+				+0.5
1,474,099	+				-0.2
1,474,427	+		CA265_RS05985	0.72	-1.0
1,474,473	+				-0.3
1,474,478	-				-0.3
1,474,478	-				+1.3