Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS05925

Experiment: R2A with Vancomycin 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.06 mg/ml
1,456,802	-		CA265_RS05920	0.76	+0.0
1,456,829	-		CA265_RS05920	0.77	-0.6
1,456,829	-		CA265_RS05920	0.77	-0.2
1,456,843	+		CA265_RS05920	0.78	-0.6
1,456,853	-		CA265_RS05920	0.79	+0.6
1,456,853	-		CA265_RS05920	0.79	+0.3
1,456,884	-		CA265_RS05920	0.80	-0.4
1,456,943	-		CA265_RS05920	0.83	-0.8
1,456,952	+		CA265_RS05920	0.84	+1.0
1,456,995	-		CA265_RS05920	0.86	+1.4
1,457,029	+		CA265_RS05920	0.88	+0.7
1,457,032	+		CA265_RS05920	0.88	+0.1
1,457,128	+				-0.3
1,457,192	+				+0.5
1,457,193	-				+0.7
1,457,266	-				+0.4
1,457,269	+				+1.6
1,457,270	-				-2.4
1,457,360	-				-0.0
1,457,360	-				-0.2
1,457,369	+				+0.1
1,457,384	-				+1.0
1,457,396	+				+0.0
1,457,415	+				-0.1
1,457,479	+				-0.2
1,457,479	+				-0.9
1,457,480	-				-0.3
1,457,481	+				+0.8
1,457,542	+				-0.2
1,457,586	-				-0.0
1,457,645	-				+0.4
1,457,663	+				+0.6
1,457,664	-				-0.3
1,457,664	-				+0.1
1,457,685	-				+0.5
1,457,733	-				+0.6
1,457,774	-				+0.7
1,457,777	+				+0.2
1,457,784	+				-0.3
1,457,784	+				-0.2
1,457,784	+				-0.3
1,457,785	-				+0.2
1,457,785	-				+0.2
1,457,785	-				+0.2
1,457,805	-				+0.2
1,457,895	-				-0.7
1,457,895	-				+0.3
1,457,895	-				-0.6
1,457,904	-				+0.4
1,457,982	+				+0.5
1,457,985	+				+0.8
1,457,986	-				+0.9
1,458,089	+		CA265_RS05925	0.12	+2.0
1,458,101	+		CA265_RS05925	0.13	+1.1
1,458,102	-		CA265_RS05925	0.13	+0.3
1,458,186	-		CA265_RS05925	0.16	+0.9
1,458,186	-		CA265_RS05925	0.16	-0.9
1,458,186	-		CA265_RS05925	0.16	-1.4
1,458,188	-		CA265_RS05925	0.17	+0.0
1,458,264	+		CA265_RS05925	0.20	+0.5
1,458,336	+		CA265_RS05925	0.23	-1.9
1,458,361	-		CA265_RS05925	0.24	+0.2
1,458,378	+		CA265_RS05925	0.24	-0.5
1,458,379	-		CA265_RS05925	0.25	+0.3
1,458,381	+		CA265_RS05925	0.25	+0.8
1,458,382	-		CA265_RS05925	0.25	-0.1
1,458,431	-		CA265_RS05925	0.27	+0.7
1,458,432	+		CA265_RS05925	0.27	+0.6
1,458,472	-		CA265_RS05925	0.28	-0.8
1,458,483	-		CA265_RS05925	0.29	+0.8
1,458,585	-		CA265_RS05925	0.33	-0.9
1,458,593	+		CA265_RS05925	0.34	-0.2
1,458,594	-		CA265_RS05925	0.34	+1.8
1,458,625	+		CA265_RS05925	0.35	-0.3
1,458,625	+		CA265_RS05925	0.35	-0.3
1,458,626	-		CA265_RS05925	0.35	+0.6
1,458,685	-		CA265_RS05925	0.37	+0.5
1,458,703	+		CA265_RS05925	0.38	+0.5
1,458,703	+		CA265_RS05925	0.38	-0.5
1,458,769	+		CA265_RS05925	0.41	-0.7
1,458,770	-		CA265_RS05925	0.41	+0.6
1,458,770	-		CA265_RS05925	0.41	-0.1
1,458,770	-		CA265_RS05925	0.41	+1.0
1,458,814	+		CA265_RS05925	0.43	+0.7
1,458,815	-		CA265_RS05925	0.43	+2.7
1,458,872	+		CA265_RS05925	0.45	-0.8
1,458,892	+		CA265_RS05925	0.46	+0.3
1,458,911	+		CA265_RS05925	0.47	+0.6
1,458,912	-		CA265_RS05925	0.47	+0.5
1,458,982	-		CA265_RS05925	0.50	+0.1
1,459,166	+		CA265_RS05925	0.58	+0.2
1,459,238	+		CA265_RS05925	0.61	-1.1
1,459,261	+		CA265_RS05925	0.62	-0.9
1,459,292	+		CA265_RS05925	0.63	+0.2
1,459,381	-		CA265_RS05925	0.67	-0.5
1,459,433	-		CA265_RS05925	0.69	+0.8
1,459,455	+		CA265_RS05925	0.70	+0.5
1,459,467	+		CA265_RS05925	0.70	-0.6
1,459,472	-		CA265_RS05925	0.70	-2.7
1,459,486	-		CA265_RS05925	0.71	-1.0
1,459,657	-		CA265_RS05925	0.78	-1.1
1,459,755	+		CA265_RS05925	0.82	-0.1
1,459,770	+		CA265_RS05925	0.83	+0.4
1,459,925	+		CA265_RS05925	0.89	-0.5
1,459,928	+		CA265_RS05925	0.89	-0.6
1,459,929	-		CA265_RS05925	0.90	-0.4
1,459,930	+		CA265_RS05925	0.90	+1.4
1,459,930	+		CA265_RS05925	0.90	+0.8
1,459,989	-				-0.1
1,460,081	+				+0.2
1,460,096	+				-0.5
1,460,097	-				+0.3
1,460,112	+				+0.0
1,460,113	-				-1.0
1,460,113	-				-0.5
1,460,137	+				+0.3
1,460,147	-				-0.3
1,460,241	+				-0.6
1,460,242	-				+0.8
1,460,242	-				-0.6
1,460,408	+				+0.7
1,460,409	-				-1.9
1,460,414	+				-0.8
1,460,415	-				-1.3
1,460,415	-				-1.5
1,460,415	-				-0.4
1,460,419	+				+0.1
1,460,429	+				-1.6
1,460,430	-				-0.4
1,460,442	+				+0.6
1,460,452	-		CA265_RS05930	0.11	-1.0
1,460,532	+		CA265_RS05930	0.17	+0.1
1,460,573	-		CA265_RS05930	0.20	-0.4
1,460,585	+		CA265_RS05930	0.21	+1.8
1,460,586	-		CA265_RS05930	0.21	-0.8
1,460,614	-		CA265_RS05930	0.23	-0.6
1,460,619	+		CA265_RS05930	0.23	+0.3
1,460,619	+		CA265_RS05930	0.23	+0.3
1,460,634	+		CA265_RS05930	0.24	-0.3
1,460,635	-		CA265_RS05930	0.24	-0.5
1,460,695	+		CA265_RS05930	0.29	+1.1
1,460,695	+		CA265_RS05930	0.29	-0.4
1,460,696	-		CA265_RS05930	0.29	-0.9
1,460,699	+		CA265_RS05930	0.29	-1.3
1,460,699	+		CA265_RS05930	0.29	+0.4
1,460,700	-		CA265_RS05930	0.29	-1.1
1,460,711	+		CA265_RS05930	0.30	+0.4
1,460,779	+		CA265_RS05930	0.35	-1.0
1,460,780	-		CA265_RS05930	0.35	+0.2
1,460,780	-		CA265_RS05930	0.35	-0.0
1,460,832	+		CA265_RS05930	0.39	+1.2
1,460,894	+		CA265_RS05930	0.43	+0.4
1,460,894	+		CA265_RS05930	0.43	-0.2
1,460,920	-		CA265_RS05930	0.45	-0.6
1,460,929	+		CA265_RS05930	0.46	-0.6
1,460,947	+		CA265_RS05930	0.47	+0.2
1,460,947	+		CA265_RS05930	0.47	-2.6
1,460,948	-		CA265_RS05930	0.47	-0.6
1,460,948	-		CA265_RS05930	0.47	-1.5
1,461,079	-		CA265_RS05930	0.57	-0.3
1,461,124	+		CA265_RS05930	0.60	-0.7
1,461,125	-		CA265_RS05930	0.61	-0.8
1,461,125	-		CA265_RS05930	0.61	+0.5
1,461,125	-		CA265_RS05930	0.61	+0.5
1,461,128	+		CA265_RS05930	0.61	+1.0
1,461,129	-		CA265_RS05930	0.61	+0.4
1,461,129	-		CA265_RS05930	0.61	-0.8
1,461,129	-		CA265_RS05930	0.61	-0.3