Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS05045

Experiment: R2A with Vancomycin 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.06 mg/ml
1,196,144	-		CA265_RS05040	0.22	+1.1
1,196,152	+		CA265_RS05040	0.23	+0.7
1,196,173	-		CA265_RS05040	0.24	+0.4
1,196,275	+		CA265_RS05040	0.33	+1.3
1,196,298	-		CA265_RS05040	0.35	-0.9
1,196,397	-		CA265_RS05040	0.43	-0.1
1,196,444	+		CA265_RS05040	0.47	-0.4
1,196,497	+		CA265_RS05040	0.51	-0.3
1,196,559	+		CA265_RS05040	0.56	-0.9
1,196,613	-		CA265_RS05040	0.61	+0.5
1,196,641	+		CA265_RS05040	0.63	-0.4
1,196,702	+		CA265_RS05040	0.68	-1.4
1,196,789	+		CA265_RS05040	0.75	-1.1
1,196,871	-		CA265_RS05040	0.82	+0.6
1,196,875	+		CA265_RS05040	0.83	-0.5
1,196,875	+		CA265_RS05040	0.83	-1.0
1,196,876	-		CA265_RS05040	0.83	-0.4
1,196,876	-		CA265_RS05040	0.83	+0.1
1,196,890	+		CA265_RS05040	0.84	-1.3
1,196,904	-		CA265_RS05040	0.85	+0.2
1,196,996	-				+0.1
1,197,013	+				-0.7
1,197,014	-				+2.7
1,197,150	-				+0.8
1,197,169	+				+0.4
1,197,169	+				-0.8
1,197,170	-				+0.2
1,197,252	+				+0.8
1,197,280	+				-0.1
1,197,336	+				+0.6
1,197,337	-				+1.0
1,197,337	-				-0.5
1,197,337	-				+0.5
1,197,365	+				+0.2
1,197,398	+				-1.8
1,197,398	+				-1.3
1,197,422	+				-0.0
1,197,422	+				-0.4
1,197,423	-				+0.0
1,197,473	-		CA265_RS05045	0.11	-0.6
1,197,476	-		CA265_RS05045	0.11	+0.4
1,197,476	-		CA265_RS05045	0.11	-2.4
1,197,481	-		CA265_RS05045	0.12	+0.4
1,197,576	-		CA265_RS05045	0.15	+0.6
1,197,593	+		CA265_RS05045	0.15	-1.2
1,197,593	+		CA265_RS05045	0.15	+0.8
1,197,609	-		CA265_RS05045	0.16	+0.8
1,197,614	+		CA265_RS05045	0.16	-0.5
1,197,641	-		CA265_RS05045	0.17	+0.2
1,197,711	-		CA265_RS05045	0.19	+0.7
1,197,716	+		CA265_RS05045	0.19	+0.7
1,197,716	+		CA265_RS05045	0.19	-0.1
1,197,717	-		CA265_RS05045	0.19	-0.8
1,197,809	+		CA265_RS05045	0.22	+0.5
1,197,809	+		CA265_RS05045	0.22	-0.3
1,197,810	-		CA265_RS05045	0.22	+0.0
1,197,813	+		CA265_RS05045	0.22	+0.6
1,197,815	+		CA265_RS05045	0.22	-0.0
1,197,821	+		CA265_RS05045	0.22	-1.1
1,197,882	-		CA265_RS05045	0.24	+0.3
1,197,887	-		CA265_RS05045	0.24	-0.1
1,197,931	-		CA265_RS05045	0.26	-0.4
1,198,159	+		CA265_RS05045	0.33	-2.2
1,198,159	+		CA265_RS05045	0.33	+0.3
1,198,164	-		CA265_RS05045	0.33	-1.3
1,198,172	-		CA265_RS05045	0.33	+0.3
1,198,172	-		CA265_RS05045	0.33	+0.2
1,198,172	-		CA265_RS05045	0.33	-0.8
1,198,205	-		CA265_RS05045	0.34	-0.2
1,198,285	+		CA265_RS05045	0.37	+1.3
1,198,316	+		CA265_RS05045	0.38	-0.1
1,198,317	-		CA265_RS05045	0.38	-0.8
1,198,437	-		CA265_RS05045	0.42	-0.4
1,198,547	+		CA265_RS05045	0.45	+0.3
1,198,548	-		CA265_RS05045	0.45	+0.8
1,198,550	-		CA265_RS05045	0.45	-0.2
1,198,662	+		CA265_RS05045	0.49	-0.3
1,198,689	+		CA265_RS05045	0.49	-0.4
1,198,690	-		CA265_RS05045	0.49	-0.1
1,198,692	-		CA265_RS05045	0.49	-0.2
1,198,704	+		CA265_RS05045	0.50	+1.0
1,198,705	-		CA265_RS05045	0.50	-1.7
1,198,705	-		CA265_RS05045	0.50	+0.2
1,198,814	+		CA265_RS05045	0.53	-1.8
1,198,884	-		CA265_RS05045	0.55	+0.3
1,199,093	+		CA265_RS05045	0.62	+1.2
1,199,093	+		CA265_RS05045	0.62	+1.2
1,199,105	+		CA265_RS05045	0.62	-0.0
1,199,222	+		CA265_RS05045	0.66	+1.3
1,199,239	-		CA265_RS05045	0.67	+2.3
1,199,263	-		CA265_RS05045	0.67	+1.2
1,199,271	-		CA265_RS05045	0.68	+0.1
1,199,277	+		CA265_RS05045	0.68	-0.5
1,199,422	-		CA265_RS05045	0.72	-0.5
1,199,424	+		CA265_RS05045	0.72	-2.8
1,199,425	-		CA265_RS05045	0.72	-0.0
1,199,525	+		CA265_RS05045	0.76	+0.1
1,199,539	+		CA265_RS05045	0.76	-0.4
1,199,548	+		CA265_RS05045	0.76	-0.5
1,199,548	+		CA265_RS05045	0.76	-1.1
1,199,548	+		CA265_RS05045	0.76	-0.8
1,199,549	-		CA265_RS05045	0.76	+0.3
1,199,549	-		CA265_RS05045	0.76	+0.5
1,199,550	+		CA265_RS05045	0.76	-0.7
1,199,574	+		CA265_RS05045	0.77	-0.3
1,199,574	+		CA265_RS05045	0.77	-0.6
1,199,758	+		CA265_RS05045	0.83	-0.1
1,199,775	+		CA265_RS05045	0.83	-0.5
1,199,783	-		CA265_RS05045	0.84	-1.0
1,199,806	-				+3.3
1,199,807	+		CA265_RS05045	0.84	-0.6
1,199,830	+		CA265_RS05045	0.85	-0.4
1,199,830	+		CA265_RS05045	0.85	-0.6
1,199,831	-		CA265_RS05045	0.85	-0.2
1,199,831	-		CA265_RS05045	0.85	-0.1
1,199,835	-		CA265_RS05045	0.85	+3.0
1,199,840	+		CA265_RS05045	0.85	+0.4
1,199,849	-		CA265_RS05045	0.86	+0.7
1,199,849	-		CA265_RS05045	0.86	-1.8
1,199,867	-		CA265_RS05045	0.86	+0.4
1,199,899	-		CA265_RS05045	0.87	+0.6
1,199,899	-		CA265_RS05045	0.87	-1.1
1,199,899	-		CA265_RS05045	0.87	-1.0
1,199,899	-		CA265_RS05045	0.87	+0.7
1,199,899	-		CA265_RS05045	0.87	-0.0
1,199,899	-		CA265_RS05045	0.87	+0.3
1,199,899	-		CA265_RS05045	0.87	-0.3
1,199,902	+		CA265_RS05045	0.87	-0.4
1,199,902	+		CA265_RS05045	0.87	-1.4
1,200,014	-				-0.4
1,200,089	+				+0.3
1,200,131	+				-0.8
1,200,132	-				+0.3
1,200,154	+				-1.0
1,200,155	-				-0.7
1,200,155	-				-0.0
1,200,163	+				-0.5
1,200,170	-				-0.2
1,200,278	+				-0.3
1,200,278	+				+0.3
1,200,411	-				-0.8
1,200,411	-				+0.1
1,200,489	+		CA265_RS05050	0.14	-0.6
1,200,552	-		CA265_RS05050	0.18	+0.0
1,200,639	-		CA265_RS05050	0.24	+0.9
1,200,836	-				+0.3
1,200,839	-		CA265_RS05050	0.39	-0.1
1,200,839	-		CA265_RS05050	0.39	-0.5
1,201,043	+		CA265_RS05050	0.53	-0.9
1,201,121	+				+0.7
1,201,168	-		CA265_RS05050	0.62	+0.3
1,201,230	-		CA265_RS05050	0.66	+1.7
1,201,230	-		CA265_RS05050	0.66	+0.7
1,201,298	+		CA265_RS05050	0.71	+0.4