Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS04675

Experiment: R2A with Vancomycin 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.06 mg/ml
1,116,629	+		CA265_RS04670	0.46	-0.2
1,116,630	-		CA265_RS04670	0.47	-0.0
1,116,798	+		CA265_RS04670	0.57	+0.2
1,116,798	+		CA265_RS04670	0.57	+0.4
1,116,836	-		CA265_RS04670	0.59	-1.5
1,116,896	+		CA265_RS04670	0.63	-0.6
1,116,896	+		CA265_RS04670	0.63	-0.2
1,116,896	+		CA265_RS04670	0.63	-1.6
1,116,897	-		CA265_RS04670	0.63	+0.1
1,116,948	-		CA265_RS04670	0.66	+0.1
1,116,981	-		CA265_RS04670	0.68	-0.4
1,116,998	-		CA265_RS04670	0.69	+0.5
1,117,030	+		CA265_RS04670	0.71	+0.5
1,117,034	+		CA265_RS04670	0.71	+0.9
1,117,034	+		CA265_RS04670	0.71	-1.2
1,117,118	+		CA265_RS04670	0.76	+0.7
1,117,166	-		CA265_RS04670	0.79	+0.2
1,117,189	+		CA265_RS04670	0.81	-0.3
1,117,194	-		CA265_RS04670	0.81	-1.0
1,117,194	-		CA265_RS04670	0.81	+0.1
1,117,219	+		CA265_RS04670	0.82	-1.4
1,117,220	-		CA265_RS04670	0.83	+0.4
1,117,223	+		CA265_RS04670	0.83	+0.2
1,117,293	+		CA265_RS04670	0.87	-1.3
1,117,293	+		CA265_RS04670	0.87	+0.4
1,117,336	-		CA265_RS04670	0.90	+2.0
1,117,356	-				+0.1
1,117,400	+				-0.0
1,117,406	-				-1.6
1,117,452	+				-0.2
1,117,453	-				+2.0
1,117,508	-				-0.3
1,117,551	-				-0.6
1,117,553	-				+0.4
1,117,585	-				-0.1
1,117,585	-				+0.7
1,117,586	+				-0.2
1,117,586	+				+0.1
1,117,587	-				+0.3
1,117,587	-				+0.3
1,117,590	-				+0.6
1,117,670	-				+0.8
1,117,685	+				-0.3
1,117,696	+				+0.6
1,117,696	+				-0.8
1,117,696	+				+1.6
1,117,697	-				-0.1
1,117,699	-				+1.7
1,117,730	-		CA265_RS04675	0.11	+0.5
1,117,772	-		CA265_RS04675	0.14	-0.3
1,117,791	+		CA265_RS04675	0.15	-0.5
1,117,810	+		CA265_RS04675	0.17	+1.1
1,117,811	-		CA265_RS04675	0.17	-0.2
1,117,811	-		CA265_RS04675	0.17	+1.2
1,117,813	-		CA265_RS04675	0.17	+1.1
1,117,826	-		CA265_RS04675	0.18	+0.3
1,117,848	+		CA265_RS04675	0.20	+0.2
1,117,903	-		CA265_RS04675	0.24	+1.4
1,117,906	+		CA265_RS04675	0.24	-1.1
1,117,906	+		CA265_RS04675	0.24	+0.1
1,117,918	+		CA265_RS04675	0.25	-0.4
1,117,918	+		CA265_RS04675	0.25	+0.2
1,117,964	-				+0.7
1,117,964	-		CA265_RS04675	0.29	+0.4
1,117,967	+		CA265_RS04675	0.29	-0.4
1,118,030	+		CA265_RS04675	0.34	-1.5
1,118,117	+		CA265_RS04675	0.40	+0.8
1,118,118	-		CA265_RS04675	0.40	+0.6
1,118,147	-		CA265_RS04675	0.43	+0.4
1,118,164	+		CA265_RS04675	0.44	-0.1
1,118,165	-		CA265_RS04675	0.44	+0.5
1,118,277	-		CA265_RS04675	0.53	+0.9
1,118,396	-		CA265_RS04675	0.62	+0.8
1,118,404	+		CA265_RS04675	0.62	+1.3
1,118,487	-		CA265_RS04675	0.69	+2.3
1,118,557	-		CA265_RS04675	0.74	-0.0
1,118,559	-		CA265_RS04675	0.74	-0.9
1,118,623	+		CA265_RS04675	0.79	-1.0
1,118,637	+		CA265_RS04675	0.80	-0.2
1,118,688	-		CA265_RS04675	0.84	-0.2
1,118,718	+		CA265_RS04675	0.86	+1.2
1,118,833	+				-1.0
1,118,834	-				-0.5
1,118,834	-				-0.3
1,118,898	+				+0.4
1,118,898	+				-0.8
1,118,913	+				-0.1
1,118,941	-				-0.7
1,119,009	-				-0.1
1,119,028	+				-0.2
1,119,045	-				-0.0
1,119,045	-				+3.3
1,119,050	-				-0.4
1,119,052	-				-0.3
1,119,077	-				+0.2
1,119,143	-				-2.1
1,119,240	-				+0.6
1,119,249	-				+0.2
1,119,249	-				-0.1
1,119,249	-				+0.0
1,119,249	-				+0.1
1,119,291	+				+0.1
1,119,292	-				-0.1
1,119,332	+		CA265_RS04680	0.12	-0.2
1,119,332	+		CA265_RS04680	0.12	-1.0
1,119,382	-		CA265_RS04680	0.18	-0.6
1,119,382	-		CA265_RS04680	0.18	-0.2
1,119,416	+		CA265_RS04680	0.22	+0.4
1,119,439	+		CA265_RS04680	0.24	-0.0
1,119,440	-		CA265_RS04680	0.25	+0.5
1,119,497	-		CA265_RS04680	0.31	-0.5
1,119,510	+		CA265_RS04680	0.33	+0.2
1,119,692	+		CA265_RS04680	0.54	-0.2
1,119,693	-		CA265_RS04680	0.54	-0.3
1,119,693	-		CA265_RS04680	0.54	+0.2
1,119,693	-		CA265_RS04680	0.54	-0.1
1,119,726	+		CA265_RS04680	0.57	-0.1
1,119,793	+		CA265_RS04680	0.65	-0.1
1,119,799	+		CA265_RS04680	0.66	-0.1
1,119,800	-		CA265_RS04680	0.66	-2.2
1,119,852	-		CA265_RS04680	0.72	-0.1
1,119,856	-		CA265_RS04680	0.72	-0.6
1,119,894	+		CA265_RS04680	0.77	-0.0