Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS04150

Experiment: R2A with Vancomycin 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.06 mg/ml
998,739	-		CA265_RS04145	0.63	-0.8
998,760	+		CA265_RS04145	0.64	-0.2
998,769	+		CA265_RS04145	0.65	+0.6
998,871	+		CA265_RS04145	0.73	+0.1
998,872	-		CA265_RS04145	0.73	+0.7
998,875	-		CA265_RS04145	0.74	+0.1
998,891	+		CA265_RS04145	0.75	+1.9
998,891	+		CA265_RS04145	0.75	+1.2
998,939	+		CA265_RS04145	0.79	-0.5
998,940	-		CA265_RS04145	0.79	+0.5
998,957	+		CA265_RS04145	0.80	-0.3
999,052	-		CA265_RS04145	0.87	-0.8
999,052	-		CA265_RS04145	0.87	+0.3
999,120	-				-0.3
999,142	+				-0.4
999,143	-				-0.5
999,143	-				-2.2
999,143	-				-0.7
999,185	+				+0.5
999,214	-				-0.1
999,220	+				-0.3
999,296	-				+1.2
999,381	+				+0.4
999,449	+				+0.2
999,465	-				-0.4
999,489	-				-0.3
999,490	+				-0.1
999,559	+				-0.6
999,602	+				+1.4
999,610	+				+0.2
999,696	-				+0.2
999,713	+				+1.1
999,715	+				-0.4
999,721	-				+0.4
999,721	-				-0.3
999,782	+				+0.9
999,798	+				+0.1
999,801	-				+0.4
999,801	-				+0.2
999,851	+				-0.3
999,917	-		CA265_RS04150	0.11	+0.5
999,917	-		CA265_RS04150	0.11	-0.5
999,919	+		CA265_RS04150	0.11	+1.0
999,922	-		CA265_RS04150	0.11	-0.1
1,000,007	+		CA265_RS04150	0.16	+0.5
1,000,008	-		CA265_RS04150	0.16	+0.3
1,000,009	+		CA265_RS04150	0.16	+0.6
1,000,009	+		CA265_RS04150	0.16	+2.3
1,000,023	+		CA265_RS04150	0.17	-1.4
1,000,024	-		CA265_RS04150	0.17	+0.1
1,000,186	-		CA265_RS04150	0.26	+0.1
1,000,201	-		CA265_RS04150	0.27	+1.0
1,000,201	-		CA265_RS04150	0.27	+0.9
1,000,205	-		CA265_RS04150	0.27	+1.3
1,000,246	+		CA265_RS04150	0.29	-0.4
1,000,247	-		CA265_RS04150	0.29	+0.0
1,000,293	+		CA265_RS04150	0.32	-0.4
1,000,323	-		CA265_RS04150	0.34	-1.3
1,000,449	+		CA265_RS04150	0.41	+1.1
1,000,526	-		CA265_RS04150	0.45	+0.1
1,000,526	-		CA265_RS04150	0.45	-0.0
1,000,529	+		CA265_RS04150	0.45	+1.0
1,000,530	-		CA265_RS04150	0.45	-0.3
1,000,616	+		CA265_RS04150	0.50	-0.0
1,000,616	+		CA265_RS04150	0.50	+0.3
1,000,633	+		CA265_RS04150	0.51	+0.4
1,000,634	-		CA265_RS04150	0.51	-0.0
1,000,690	+		CA265_RS04150	0.54	+1.9
1,000,690	+		CA265_RS04150	0.54	-0.1
1,000,710	+		CA265_RS04150	0.55	+0.4
1,000,730	-		CA265_RS04150	0.57	-0.1
1,000,750	-		CA265_RS04150	0.58	+0.1
1,000,754	-		CA265_RS04150	0.58	+0.4
1,000,754	-		CA265_RS04150	0.58	+1.3
1,000,754	-		CA265_RS04150	0.58	+1.3
1,000,778	+		CA265_RS04150	0.59	+0.8
1,000,787	-		CA265_RS04150	0.60	+0.3
1,000,920	-		CA265_RS04150	0.67	+0.2
1,000,920	-		CA265_RS04150	0.67	+1.1
1,000,920	-		CA265_RS04150	0.67	-0.9
1,001,045	+		CA265_RS04150	0.74	+0.3
1,001,046	-		CA265_RS04150	0.74	+1.2
1,001,046	-		CA265_RS04150	0.74	-1.2
1,001,178	-		CA265_RS04150	0.82	+0.1
1,001,232	-		CA265_RS04150	0.85	-2.8
1,001,350	-				-0.2
1,001,352	+				-0.6
1,001,353	-				-3.0
1,001,353	-				+0.5
1,001,356	+				+1.2
1,001,434	+				-0.6
1,001,478	+				+0.5
1,001,495	+				-1.3
1,001,511	+				-0.3
1,001,512	-				+0.0
1,001,561	+				+0.3
1,001,612	+				+0.7
1,001,614	+				+0.3
1,001,617	-				+0.1
1,001,620	+				+1.2
1,001,621	-				+0.8
1,001,621	-				+0.4
1,001,685	+				-0.5
1,001,685	+				+0.1
1,001,733	-				-0.6
1,001,851	-				+0.3
1,001,853	+				+0.4
1,001,890	+				-0.1
1,001,922	+				+0.3
1,001,976	+				-0.0
1,001,977	-				+0.9
1,001,977	-				-0.2
1,002,064	+		CA265_RS04155	0.13	-0.7
1,002,064	+		CA265_RS04155	0.13	-0.1
1,002,159	+		CA265_RS04155	0.17	-1.2
1,002,159	+		CA265_RS04155	0.17	-0.4
1,002,320	+		CA265_RS04155	0.25	-1.8
1,002,321	-		CA265_RS04155	0.25	+0.0
1,002,368	-		CA265_RS04155	0.27	+0.8
1,002,368	-		CA265_RS04155	0.27	+0.8
1,002,398	+		CA265_RS04155	0.28	-0.4
1,002,410	+		CA265_RS04155	0.29	-0.2
1,002,411	-		CA265_RS04155	0.29	-0.8
1,002,419	+		CA265_RS04155	0.29	+0.8
1,002,420	-		CA265_RS04155	0.29	-0.0
1,002,481	-		CA265_RS04155	0.32	+0.6
1,002,491	+		CA265_RS04155	0.33	-0.6
1,002,492	-		CA265_RS04155	0.33	+0.2