Experiment: R2A with Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS04005 and CA265_RS04010 are separated by 4 nucleotides CA265_RS04010 and CA265_RS04015 are separated by 11 nucleotides CA265_RS04015 and CA265_RS04020 overlap by 1 nucleotides
CA265_RS04005: CA265_RS04005 - hypothetical protein, at 957,220 to 958,779
_RS04005
CA265_RS04010: CA265_RS04010 - hypothetical protein, at 958,784 to 959,728
_RS04010
CA265_RS04015: CA265_RS04015 - ABC transporter ATP-binding protein, at 959,740 to 961,941
_RS04015
CA265_RS04020: CA265_RS04020 - hypothetical protein, at 961,941 to 963,233
_RS04020
Position (kb) 959
960
961
962 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 958.749 kb on + strand at 958.781 kb on + strand at 958.789 kb on + strand at 958.807 kb on + strand at 958.833 kb on + strand at 958.833 kb on + strand at 958.833 kb on + strand at 958.834 kb on - strand at 958.932 kb on + strand, within CA265_RS04010 at 958.940 kb on + strand, within CA265_RS04010 at 958.941 kb on - strand, within CA265_RS04010 at 958.942 kb on + strand, within CA265_RS04010 at 958.942 kb on + strand, within CA265_RS04010 at 958.982 kb on - strand, within CA265_RS04010 at 959.015 kb on - strand, within CA265_RS04010 at 959.047 kb on + strand, within CA265_RS04010 at 959.068 kb on - strand, within CA265_RS04010 at 959.090 kb on + strand, within CA265_RS04010 at 959.154 kb on + strand, within CA265_RS04010 at 959.165 kb on + strand, within CA265_RS04010 at 959.180 kb on - strand, within CA265_RS04010 at 959.242 kb on - strand, within CA265_RS04010 at 959.274 kb on + strand, within CA265_RS04010 at 959.291 kb on - strand, within CA265_RS04010 at 959.308 kb on - strand, within CA265_RS04010 at 959.322 kb on + strand, within CA265_RS04010 at 959.396 kb on + strand, within CA265_RS04010 at 959.449 kb on + strand, within CA265_RS04010 at 959.479 kb on - strand, within CA265_RS04010 at 959.489 kb on + strand, within CA265_RS04010 at 959.509 kb on + strand, within CA265_RS04010 at 959.570 kb on + strand, within CA265_RS04010 at 959.571 kb on - strand, within CA265_RS04010 at 959.647 kb on - strand at 959.671 kb on - strand at 959.693 kb on + strand at 959.694 kb on - strand at 959.696 kb on - strand at 959.722 kb on + strand at 959.737 kb on + strand at 959.865 kb on - strand at 959.879 kb on + strand at 959.923 kb on - strand at 960.012 kb on - strand, within CA265_RS04015 at 960.052 kb on + strand, within CA265_RS04015 at 960.052 kb on + strand, within CA265_RS04015 at 960.052 kb on + strand, within CA265_RS04015 at 960.053 kb on - strand, within CA265_RS04015 at 960.053 kb on - strand, within CA265_RS04015 at 960.053 kb on - strand, within CA265_RS04015 at 960.084 kb on + strand, within CA265_RS04015 at 960.084 kb on + strand, within CA265_RS04015 at 960.085 kb on - strand, within CA265_RS04015 at 960.117 kb on + strand, within CA265_RS04015 at 960.126 kb on + strand, within CA265_RS04015 at 960.143 kb on + strand, within CA265_RS04015 at 960.144 kb on - strand, within CA265_RS04015 at 960.164 kb on + strand, within CA265_RS04015 at 960.164 kb on + strand, within CA265_RS04015 at 960.164 kb on + strand, within CA265_RS04015 at 960.238 kb on + strand, within CA265_RS04015 at 960.246 kb on + strand, within CA265_RS04015 at 960.247 kb on - strand, within CA265_RS04015 at 960.284 kb on + strand, within CA265_RS04015 at 960.376 kb on + strand, within CA265_RS04015 at 960.377 kb on - strand, within CA265_RS04015 at 960.381 kb on - strand, within CA265_RS04015 at 960.475 kb on - strand, within CA265_RS04015 at 960.475 kb on - strand, within CA265_RS04015 at 960.633 kb on + strand, within CA265_RS04015 at 960.660 kb on - strand, within CA265_RS04015 at 960.702 kb on + strand, within CA265_RS04015 at 960.706 kb on - strand, within CA265_RS04015 at 960.706 kb on - strand, within CA265_RS04015 at 960.710 kb on + strand, within CA265_RS04015 at 960.710 kb on + strand, within CA265_RS04015 at 960.710 kb on + strand, within CA265_RS04015 at 960.711 kb on - strand, within CA265_RS04015 at 960.712 kb on + strand, within CA265_RS04015 at 960.714 kb on + strand, within CA265_RS04015 at 960.755 kb on + strand, within CA265_RS04015 at 960.755 kb on + strand, within CA265_RS04015 at 960.837 kb on - strand, within CA265_RS04015 at 960.969 kb on + strand, within CA265_RS04015 at 960.971 kb on + strand, within CA265_RS04015 at 960.971 kb on + strand, within CA265_RS04015 at 960.993 kb on + strand, within CA265_RS04015 at 961.004 kb on + strand, within CA265_RS04015 at 961.005 kb on - strand, within CA265_RS04015 at 961.045 kb on + strand, within CA265_RS04015 at 961.046 kb on - strand, within CA265_RS04015 at 961.046 kb on - strand, within CA265_RS04015 at 961.061 kb on + strand, within CA265_RS04015 at 961.061 kb on + strand, within CA265_RS04015 at 961.061 kb on + strand, within CA265_RS04015 at 961.082 kb on + strand, within CA265_RS04015 at 961.082 kb on + strand, within CA265_RS04015 at 961.095 kb on - strand, within CA265_RS04015 at 961.125 kb on - strand, within CA265_RS04015 at 961.212 kb on + strand, within CA265_RS04015 at 961.263 kb on - strand, within CA265_RS04015 at 961.283 kb on + strand, within CA265_RS04015 at 961.333 kb on - strand, within CA265_RS04015 at 961.333 kb on - strand, within CA265_RS04015 at 961.352 kb on + strand, within CA265_RS04015 at 961.353 kb on - strand, within CA265_RS04015 at 961.353 kb on - strand, within CA265_RS04015 at 961.389 kb on + strand, within CA265_RS04015 at 961.423 kb on + strand, within CA265_RS04015 at 961.498 kb on - strand, within CA265_RS04015 at 961.553 kb on + strand, within CA265_RS04015 at 961.578 kb on + strand, within CA265_RS04015 at 961.584 kb on - strand, within CA265_RS04015 at 961.672 kb on + strand, within CA265_RS04015 at 961.719 kb on - strand, within CA265_RS04015 at 961.740 kb on - strand at 961.785 kb on - strand at 961.807 kb on - strand at 961.807 kb on - strand at 961.829 kb on + strand at 961.830 kb on - strand at 961.836 kb on - strand at 961.856 kb on + strand at 961.867 kb on - strand at 961.974 kb on + strand at 961.981 kb on + strand at 962.003 kb on + strand at 962.053 kb on + strand at 962.140 kb on + strand, within CA265_RS04020 at 962.141 kb on - strand, within CA265_RS04020 at 962.160 kb on + strand, within CA265_RS04020 at 962.161 kb on - strand, within CA265_RS04020 at 962.162 kb on + strand, within CA265_RS04020 at 962.212 kb on - strand, within CA265_RS04020 at 962.380 kb on - strand, within CA265_RS04020 at 962.405 kb on - strand, within CA265_RS04020 at 962.409 kb on + strand, within CA265_RS04020 at 962.411 kb on + strand, within CA265_RS04020 at 962.411 kb on + strand, within CA265_RS04020 at 962.411 kb on + strand, within CA265_RS04020 at 962.412 kb on - strand, within CA265_RS04020 at 962.413 kb on + strand, within CA265_RS04020 at 962.413 kb on + strand, within CA265_RS04020 at 962.437 kb on - strand, within CA265_RS04020 at 962.459 kb on - strand, within CA265_RS04020 at 962.473 kb on + strand, within CA265_RS04020 at 962.605 kb on - strand, within CA265_RS04020 at 962.607 kb on - strand, within CA265_RS04020 at 962.625 kb on + strand, within CA265_RS04020 at 962.626 kb on - strand, within CA265_RS04020 at 962.637 kb on - strand, within CA265_RS04020 at 962.671 kb on + strand, within CA265_RS04020 at 962.726 kb on + strand, within CA265_RS04020 at 962.727 kb on - strand, within CA265_RS04020 at 962.772 kb on - strand, within CA265_RS04020 at 962.772 kb on - strand, within CA265_RS04020 at 962.774 kb on - strand, within CA265_RS04020 at 962.838 kb on - strand, within CA265_RS04020 at 962.873 kb on - strand, within CA265_RS04020 at 962.935 kb on - strand, within CA265_RS04020
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.06 mg/ml remove 958,749 + +2.3 958,781 + +0.7 958,789 + +1.8 958,807 + +1.3 958,833 + +1.9 958,833 + +1.3 958,833 + +1.7 958,834 - -0.1 958,932 + CA265_RS04010 0.16 +1.2 958,940 + CA265_RS04010 0.17 +1.0 958,941 - CA265_RS04010 0.17 +0.2 958,942 + CA265_RS04010 0.17 +1.5 958,942 + CA265_RS04010 0.17 +0.4 958,982 - CA265_RS04010 0.21 +0.5 959,015 - CA265_RS04010 0.24 +1.3 959,047 + CA265_RS04010 0.28 +1.3 959,068 - CA265_RS04010 0.30 -1.1 959,090 + CA265_RS04010 0.32 +1.0 959,154 + CA265_RS04010 0.39 +1.7 959,165 + CA265_RS04010 0.40 +2.4 959,180 - CA265_RS04010 0.42 -1.1 959,242 - CA265_RS04010 0.48 -0.1 959,274 + CA265_RS04010 0.52 +1.1 959,291 - CA265_RS04010 0.54 +0.7 959,308 - CA265_RS04010 0.55 +0.9 959,322 + CA265_RS04010 0.57 +0.9 959,396 + CA265_RS04010 0.65 +1.9 959,449 + CA265_RS04010 0.70 +2.4 959,479 - CA265_RS04010 0.74 +0.7 959,489 + CA265_RS04010 0.75 +1.2 959,509 + CA265_RS04010 0.77 +1.8 959,570 + CA265_RS04010 0.83 +2.3 959,571 - CA265_RS04010 0.83 -0.8 959,647 - +0.5 959,671 - +0.7 959,693 + +2.0 959,694 - -0.3 959,696 - +1.9 959,722 + +2.2 959,737 + +1.1 959,865 - +0.0 959,879 + +0.7 959,923 - -0.5 960,012 - CA265_RS04015 0.12 -0.2 960,052 + CA265_RS04015 0.14 +1.1 960,052 + CA265_RS04015 0.14 +0.4 960,052 + CA265_RS04015 0.14 +0.5 960,053 - CA265_RS04015 0.14 -0.8 960,053 - CA265_RS04015 0.14 -0.8 960,053 - CA265_RS04015 0.14 -0.4 960,084 + CA265_RS04015 0.16 +1.3 960,084 + CA265_RS04015 0.16 +0.8 960,085 - CA265_RS04015 0.16 -0.4 960,117 + CA265_RS04015 0.17 +2.1 960,126 + CA265_RS04015 0.18 +0.8 960,143 + CA265_RS04015 0.18 +0.5 960,144 - CA265_RS04015 0.18 -0.4 960,164 + CA265_RS04015 0.19 +0.9 960,164 + CA265_RS04015 0.19 +0.4 960,164 + CA265_RS04015 0.19 +1.4 960,238 + CA265_RS04015 0.23 +0.7 960,246 + CA265_RS04015 0.23 +0.3 960,247 - CA265_RS04015 0.23 +0.0 960,284 + CA265_RS04015 0.25 +3.3 960,376 + CA265_RS04015 0.29 +1.3 960,377 - CA265_RS04015 0.29 -0.4 960,381 - CA265_RS04015 0.29 +0.5 960,475 - CA265_RS04015 0.33 +0.1 960,475 - CA265_RS04015 0.33 +0.4 960,633 + CA265_RS04015 0.41 +2.1 960,660 - CA265_RS04015 0.42 +0.5 960,702 + CA265_RS04015 0.44 +1.9 960,706 - CA265_RS04015 0.44 -0.3 960,706 - CA265_RS04015 0.44 -0.2 960,710 + CA265_RS04015 0.44 +3.4 960,710 + CA265_RS04015 0.44 +3.7 960,710 + CA265_RS04015 0.44 +2.7 960,711 - CA265_RS04015 0.44 -0.1 960,712 + CA265_RS04015 0.44 +2.9 960,714 + CA265_RS04015 0.44 +2.3 960,755 + CA265_RS04015 0.46 +2.6 960,755 + CA265_RS04015 0.46 +2.9 960,837 - CA265_RS04015 0.50 -1.2 960,969 + CA265_RS04015 0.56 +3.2 960,971 + CA265_RS04015 0.56 +2.2 960,971 + CA265_RS04015 0.56 +2.7 960,993 + CA265_RS04015 0.57 +2.9 961,004 + CA265_RS04015 0.57 +2.5 961,005 - CA265_RS04015 0.57 -0.5 961,045 + CA265_RS04015 0.59 +2.2 961,046 - CA265_RS04015 0.59 -0.1 961,046 - CA265_RS04015 0.59 +0.6 961,061 + CA265_RS04015 0.60 +2.6 961,061 + CA265_RS04015 0.60 +3.3 961,061 + CA265_RS04015 0.60 +2.7 961,082 + CA265_RS04015 0.61 +3.5 961,082 + CA265_RS04015 0.61 +2.5 961,095 - CA265_RS04015 0.62 -0.2 961,125 - CA265_RS04015 0.63 -0.8 961,212 + CA265_RS04015 0.67 +2.6 961,263 - CA265_RS04015 0.69 +0.2 961,283 + CA265_RS04015 0.70 +2.5 961,333 - CA265_RS04015 0.72 -0.7 961,333 - CA265_RS04015 0.72 +0.3 961,352 + CA265_RS04015 0.73 +3.1 961,353 - CA265_RS04015 0.73 -0.9 961,353 - CA265_RS04015 0.73 -0.8 961,389 + CA265_RS04015 0.75 +3.8 961,423 + CA265_RS04015 0.76 +3.3 961,498 - CA265_RS04015 0.80 -0.3 961,553 + CA265_RS04015 0.82 +3.3 961,578 + CA265_RS04015 0.83 -0.6 961,584 - CA265_RS04015 0.84 -0.7 961,672 + CA265_RS04015 0.88 +3.5 961,719 - CA265_RS04015 0.90 -0.1 961,740 - -1.0 961,785 - +1.5 961,807 - -0.3 961,807 - -1.0 961,829 + +4.0 961,830 - -0.4 961,836 - +0.3 961,856 + +3.7 961,867 - +1.0 961,974 + +3.2 961,981 + +3.7 962,003 + +3.8 962,053 + +3.9 962,140 + CA265_RS04020 0.15 +4.3 962,141 - CA265_RS04020 0.15 +1.9 962,160 + CA265_RS04020 0.17 +3.5 962,161 - CA265_RS04020 0.17 +0.6 962,162 + CA265_RS04020 0.17 +2.9 962,212 - CA265_RS04020 0.21 +0.6 962,380 - CA265_RS04020 0.34 -0.2 962,405 - CA265_RS04020 0.36 +0.2 962,409 + CA265_RS04020 0.36 +3.5 962,411 + CA265_RS04020 0.36 +4.2 962,411 + CA265_RS04020 0.36 +4.1 962,411 + CA265_RS04020 0.36 +4.0 962,412 - CA265_RS04020 0.36 +0.7 962,413 + CA265_RS04020 0.37 +4.6 962,413 + CA265_RS04020 0.37 +4.0 962,437 - CA265_RS04020 0.38 -1.0 962,459 - CA265_RS04020 0.40 -0.7 962,473 + CA265_RS04020 0.41 +4.2 962,605 - CA265_RS04020 0.51 -0.4 962,607 - CA265_RS04020 0.52 -0.3 962,625 + CA265_RS04020 0.53 +3.8 962,626 - CA265_RS04020 0.53 -0.7 962,637 - CA265_RS04020 0.54 -1.0 962,671 + CA265_RS04020 0.56 +4.3 962,726 + CA265_RS04020 0.61 +4.8 962,727 - CA265_RS04020 0.61 -0.0 962,772 - CA265_RS04020 0.64 -0.4 962,772 - CA265_RS04020 0.64 -0.5 962,774 - CA265_RS04020 0.64 +0.3 962,838 - CA265_RS04020 0.69 -0.0 962,873 - CA265_RS04020 0.72 +0.3 962,935 - CA265_RS04020 0.77 -0.9
Or see this region's nucleotide sequence