Experiment: R2A with Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03640 and CA265_RS03645 are separated by 275 nucleotides CA265_RS03645 and CA265_RS03650 are separated by 70 nucleotides CA265_RS03650 and CA265_RS03655 are separated by 68 nucleotides
CA265_RS03640: CA265_RS03640 - ATP phosphoribosyltransferase, at 869,611 to 870,462
_RS03640
CA265_RS03645: CA265_RS03645 - L,D-transpeptidase, at 870,738 to 872,300
_RS03645
CA265_RS03650: CA265_RS03650 - NUDIX hydrolase, at 872,371 to 873,063
_RS03650
CA265_RS03655: CA265_RS03655 - phosphoribosylpyrophosphate synthetase, at 873,132 to 873,965
_RS03655
Position (kb) 870
871
872
873 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 869.815 kb on + strand, within CA265_RS03640 at 869.815 kb on + strand, within CA265_RS03640 at 869.816 kb on - strand, within CA265_RS03640 at 869.825 kb on + strand, within CA265_RS03640 at 869.826 kb on - strand, within CA265_RS03640 at 869.848 kb on + strand, within CA265_RS03640 at 869.968 kb on + strand, within CA265_RS03640 at 869.987 kb on - strand, within CA265_RS03640 at 869.987 kb on - strand, within CA265_RS03640 at 870.017 kb on - strand, within CA265_RS03640 at 870.034 kb on + strand, within CA265_RS03640 at 870.108 kb on - strand, within CA265_RS03640 at 870.120 kb on + strand, within CA265_RS03640 at 870.239 kb on - strand, within CA265_RS03640 at 870.286 kb on + strand, within CA265_RS03640 at 870.383 kb on - strand at 870.401 kb on - strand at 870.401 kb on - strand at 870.473 kb on - strand at 870.474 kb on + strand at 870.530 kb on - strand at 870.556 kb on - strand at 870.562 kb on - strand at 870.593 kb on - strand at 870.605 kb on - strand at 870.637 kb on - strand at 870.675 kb on + strand at 870.687 kb on - strand at 870.698 kb on - strand at 870.707 kb on - strand at 870.801 kb on - strand at 870.874 kb on + strand at 870.874 kb on + strand at 870.967 kb on - strand, within CA265_RS03645 at 870.978 kb on - strand, within CA265_RS03645 at 870.987 kb on - strand, within CA265_RS03645 at 871.030 kb on - strand, within CA265_RS03645 at 871.058 kb on + strand, within CA265_RS03645 at 871.106 kb on - strand, within CA265_RS03645 at 871.168 kb on + strand, within CA265_RS03645 at 871.169 kb on - strand, within CA265_RS03645 at 871.199 kb on + strand, within CA265_RS03645 at 871.212 kb on + strand, within CA265_RS03645 at 871.251 kb on + strand, within CA265_RS03645 at 871.252 kb on - strand, within CA265_RS03645 at 871.280 kb on - strand, within CA265_RS03645 at 871.289 kb on + strand, within CA265_RS03645 at 871.320 kb on - strand, within CA265_RS03645 at 871.324 kb on + strand, within CA265_RS03645 at 871.354 kb on - strand, within CA265_RS03645 at 871.355 kb on + strand, within CA265_RS03645 at 871.379 kb on - strand, within CA265_RS03645 at 871.464 kb on + strand, within CA265_RS03645 at 871.464 kb on + strand, within CA265_RS03645 at 871.465 kb on - strand, within CA265_RS03645 at 871.465 kb on - strand, within CA265_RS03645 at 871.522 kb on + strand, within CA265_RS03645 at 871.527 kb on - strand, within CA265_RS03645 at 871.575 kb on - strand, within CA265_RS03645 at 871.741 kb on - strand, within CA265_RS03645 at 871.744 kb on - strand, within CA265_RS03645 at 871.744 kb on - strand, within CA265_RS03645 at 871.833 kb on - strand, within CA265_RS03645 at 871.920 kb on + strand, within CA265_RS03645 at 871.937 kb on + strand, within CA265_RS03645 at 871.992 kb on - strand, within CA265_RS03645 at 872.043 kb on + strand, within CA265_RS03645 at 872.044 kb on - strand, within CA265_RS03645 at 872.085 kb on - strand, within CA265_RS03645 at 872.085 kb on - strand, within CA265_RS03645 at 872.087 kb on + strand, within CA265_RS03645 at 872.088 kb on - strand, within CA265_RS03645 at 872.096 kb on - strand, within CA265_RS03645 at 872.139 kb on - strand, within CA265_RS03645 at 872.202 kb on + strand at 872.203 kb on - strand at 872.203 kb on - strand at 872.356 kb on + strand at 872.356 kb on + strand at 872.441 kb on + strand, within CA265_RS03650 at 872.472 kb on - strand, within CA265_RS03650 at 872.490 kb on - strand, within CA265_RS03650 at 872.534 kb on + strand, within CA265_RS03650 at 872.607 kb on + strand, within CA265_RS03650 at 872.608 kb on - strand, within CA265_RS03650 at 872.648 kb on - strand, within CA265_RS03650 at 872.660 kb on + strand, within CA265_RS03650 at 872.754 kb on + strand, within CA265_RS03650 at 872.826 kb on - strand, within CA265_RS03650 at 872.867 kb on - strand, within CA265_RS03650 at 872.950 kb on - strand, within CA265_RS03650 at 873.013 kb on + strand at 873.137 kb on - strand at 873.222 kb on - strand, within CA265_RS03655 at 873.261 kb on - strand, within CA265_RS03655
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.06 mg/ml remove 869,815 + CA265_RS03640 0.24 +0.6 869,815 + CA265_RS03640 0.24 -0.3 869,816 - CA265_RS03640 0.24 +0.2 869,825 + CA265_RS03640 0.25 +0.6 869,826 - CA265_RS03640 0.25 -0.2 869,848 + CA265_RS03640 0.28 +2.0 869,968 + CA265_RS03640 0.42 +0.5 869,987 - CA265_RS03640 0.44 -0.9 869,987 - CA265_RS03640 0.44 +0.1 870,017 - CA265_RS03640 0.48 -0.2 870,034 + CA265_RS03640 0.50 +0.8 870,108 - CA265_RS03640 0.58 +0.9 870,120 + CA265_RS03640 0.60 +1.0 870,239 - CA265_RS03640 0.74 -0.1 870,286 + CA265_RS03640 0.79 +1.0 870,383 - +0.6 870,401 - +0.6 870,401 - -0.1 870,473 - -0.8 870,474 + +0.3 870,530 - +1.2 870,556 - +0.0 870,562 - +0.7 870,593 - -0.1 870,605 - -0.1 870,637 - +0.6 870,675 + +1.0 870,687 - -0.5 870,698 - -0.6 870,707 - -3.2 870,801 - -1.6 870,874 + -1.4 870,874 + -2.9 870,967 - CA265_RS03645 0.15 -1.3 870,978 - CA265_RS03645 0.15 -1.8 870,987 - CA265_RS03645 0.16 -3.1 871,030 - CA265_RS03645 0.19 +1.3 871,058 + CA265_RS03645 0.20 -0.2 871,106 - CA265_RS03645 0.24 -0.5 871,168 + CA265_RS03645 0.28 -1.6 871,169 - CA265_RS03645 0.28 -1.0 871,199 + CA265_RS03645 0.29 -2.7 871,212 + CA265_RS03645 0.30 -0.9 871,251 + CA265_RS03645 0.33 -1.6 871,252 - CA265_RS03645 0.33 -0.8 871,280 - CA265_RS03645 0.35 -1.2 871,289 + CA265_RS03645 0.35 -1.6 871,320 - CA265_RS03645 0.37 -2.7 871,324 + CA265_RS03645 0.37 -2.0 871,354 - CA265_RS03645 0.39 -1.4 871,355 + CA265_RS03645 0.39 -1.1 871,379 - CA265_RS03645 0.41 -1.8 871,464 + CA265_RS03645 0.46 -3.2 871,464 + CA265_RS03645 0.46 -2.2 871,465 - CA265_RS03645 0.47 -1.9 871,465 - CA265_RS03645 0.47 -0.6 871,522 + CA265_RS03645 0.50 -0.6 871,527 - CA265_RS03645 0.50 -2.0 871,575 - CA265_RS03645 0.54 -1.8 871,741 - CA265_RS03645 0.64 -1.4 871,744 - CA265_RS03645 0.64 -1.1 871,744 - CA265_RS03645 0.64 -1.1 871,833 - CA265_RS03645 0.70 -3.0 871,920 + CA265_RS03645 0.76 -0.5 871,937 + CA265_RS03645 0.77 -2.0 871,992 - CA265_RS03645 0.80 -2.1 872,043 + CA265_RS03645 0.83 -2.1 872,044 - CA265_RS03645 0.84 -1.8 872,085 - CA265_RS03645 0.86 -0.6 872,085 - CA265_RS03645 0.86 -3.4 872,087 + CA265_RS03645 0.86 -1.5 872,088 - CA265_RS03645 0.86 -1.5 872,096 - CA265_RS03645 0.87 -0.7 872,139 - CA265_RS03645 0.90 +0.2 872,202 + -0.8 872,203 - -1.8 872,203 - -1.6 872,356 + +0.4 872,356 + -1.4 872,441 + CA265_RS03650 0.10 +0.1 872,472 - CA265_RS03650 0.15 -1.3 872,490 - CA265_RS03650 0.17 -0.8 872,534 + CA265_RS03650 0.24 -0.4 872,607 + CA265_RS03650 0.34 +0.5 872,608 - CA265_RS03650 0.34 +0.2 872,648 - CA265_RS03650 0.40 -1.9 872,660 + CA265_RS03650 0.42 -0.2 872,754 + CA265_RS03650 0.55 +0.2 872,826 - CA265_RS03650 0.66 -2.3 872,867 - CA265_RS03650 0.72 +0.1 872,950 - CA265_RS03650 0.84 -0.1 873,013 + -0.5 873,137 - +0.7 873,222 - CA265_RS03655 0.11 -1.4 873,261 - CA265_RS03655 0.15 -1.6
Or see this region's nucleotide sequence