Experiment: R2A with Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03080 and CA265_RS03085 are separated by 150 nucleotides CA265_RS03085 and CA265_RS03090 are separated by 614 nucleotides
CA265_RS03080: CA265_RS03080 - malate dehydrogenase, at 762,147 to 763,085
_RS03080
CA265_RS03085: CA265_RS03085 - hypothetical protein, at 763,236 to 763,688
_RS03085
CA265_RS03090: CA265_RS03090 - DNA polymerase III subunit alpha, at 764,303 to 768,736
_RS03090
Position (kb) 763
764 Strain fitness (log2 ratio) -2
-1
0
1
2 at 762.275 kb on + strand, within CA265_RS03080 at 762.286 kb on - strand, within CA265_RS03080 at 762.291 kb on + strand, within CA265_RS03080 at 762.300 kb on - strand, within CA265_RS03080 at 762.426 kb on + strand, within CA265_RS03080 at 762.458 kb on + strand, within CA265_RS03080 at 762.483 kb on - strand, within CA265_RS03080 at 762.501 kb on - strand, within CA265_RS03080 at 762.520 kb on + strand, within CA265_RS03080 at 762.555 kb on - strand, within CA265_RS03080 at 762.607 kb on - strand, within CA265_RS03080 at 762.623 kb on - strand, within CA265_RS03080 at 762.706 kb on + strand, within CA265_RS03080 at 762.707 kb on - strand, within CA265_RS03080 at 762.803 kb on + strand, within CA265_RS03080 at 762.806 kb on + strand, within CA265_RS03080 at 762.858 kb on - strand, within CA265_RS03080 at 762.892 kb on + strand, within CA265_RS03080 at 762.993 kb on + strand at 763.115 kb on + strand at 763.145 kb on + strand at 763.196 kb on - strand at 763.198 kb on + strand at 763.269 kb on - strand at 763.284 kb on - strand, within CA265_RS03085 at 763.290 kb on + strand, within CA265_RS03085 at 763.291 kb on - strand, within CA265_RS03085 at 763.341 kb on - strand, within CA265_RS03085 at 763.385 kb on + strand, within CA265_RS03085 at 763.388 kb on + strand, within CA265_RS03085 at 763.389 kb on - strand, within CA265_RS03085 at 763.389 kb on - strand, within CA265_RS03085 at 763.497 kb on - strand, within CA265_RS03085 at 763.535 kb on + strand, within CA265_RS03085 at 763.536 kb on - strand, within CA265_RS03085 at 763.540 kb on - strand, within CA265_RS03085 at 763.550 kb on - strand, within CA265_RS03085 at 763.569 kb on + strand, within CA265_RS03085 at 763.718 kb on + strand at 763.736 kb on - strand at 763.784 kb on + strand at 763.785 kb on - strand at 763.831 kb on + strand at 763.845 kb on - strand at 763.851 kb on - strand at 763.855 kb on + strand at 763.855 kb on + strand at 763.856 kb on - strand at 763.924 kb on - strand at 763.936 kb on + strand at 763.943 kb on + strand at 763.999 kb on - strand at 764.021 kb on - strand at 764.135 kb on - strand at 764.177 kb on - strand at 764.189 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.06 mg/ml remove 762,275 + CA265_RS03080 0.14 -1.4 762,286 - CA265_RS03080 0.15 +0.3 762,291 + CA265_RS03080 0.15 -1.2 762,300 - CA265_RS03080 0.16 -2.0 762,426 + CA265_RS03080 0.30 -1.4 762,458 + CA265_RS03080 0.33 -0.0 762,483 - CA265_RS03080 0.36 +1.4 762,501 - CA265_RS03080 0.38 +0.5 762,520 + CA265_RS03080 0.40 -1.1 762,555 - CA265_RS03080 0.43 -2.2 762,607 - CA265_RS03080 0.49 -1.4 762,623 - CA265_RS03080 0.51 -1.3 762,706 + CA265_RS03080 0.60 +0.4 762,707 - CA265_RS03080 0.60 -1.0 762,803 + CA265_RS03080 0.70 -1.1 762,806 + CA265_RS03080 0.70 +0.0 762,858 - CA265_RS03080 0.76 -0.9 762,892 + CA265_RS03080 0.79 -0.4 762,993 + -0.1 763,115 + +0.7 763,145 + -0.9 763,196 - +1.5 763,198 + +0.4 763,269 - +1.4 763,284 - CA265_RS03085 0.11 +1.4 763,290 + CA265_RS03085 0.12 -0.4 763,291 - CA265_RS03085 0.12 +1.6 763,341 - CA265_RS03085 0.23 +2.2 763,385 + CA265_RS03085 0.33 -0.4 763,388 + CA265_RS03085 0.34 +1.1 763,389 - CA265_RS03085 0.34 +2.6 763,389 - CA265_RS03085 0.34 +1.7 763,497 - CA265_RS03085 0.58 +1.4 763,535 + CA265_RS03085 0.66 +2.6 763,536 - CA265_RS03085 0.66 +1.1 763,540 - CA265_RS03085 0.67 +0.3 763,550 - CA265_RS03085 0.69 +0.5 763,569 + CA265_RS03085 0.74 -0.5 763,718 + +2.2 763,736 - -1.4 763,784 + -0.5 763,785 - +0.7 763,831 + -0.3 763,845 - -0.1 763,851 - -1.8 763,855 + -0.4 763,855 + -0.6 763,856 - -0.6 763,924 - -0.9 763,936 + +0.5 763,943 + +0.8 763,999 - -2.2 764,021 - -0.5 764,135 - +1.2 764,177 - -2.2 764,189 - +1.2
Or see this region's nucleotide sequence