Experiment: R2A with Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS02935 and CA265_RS02940 are separated by 78 nucleotides CA265_RS02940 and CA265_RS02945 are separated by 91 nucleotides CA265_RS02945 and CA265_RS02950 are separated by 77 nucleotides
CA265_RS02935: CA265_RS02935 - hypothetical protein, at 731,645 to 733,684
_RS02935
CA265_RS02940: CA265_RS02940 - alpha-1,3/4-fucosidase, at 733,763 to 735,997
_RS02940
CA265_RS02945: CA265_RS02945 - hypothetical protein, at 736,089 to 736,400
_RS02945
CA265_RS02950: CA265_RS02950 - long-chain fatty acid transporter, at 736,478 to 737,701
_RS02950
Position (kb) 733
734
735
736 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 732.781 kb on + strand, within CA265_RS02935 at 732.839 kb on + strand, within CA265_RS02935 at 732.847 kb on - strand, within CA265_RS02935 at 732.890 kb on - strand, within CA265_RS02935 at 732.973 kb on + strand, within CA265_RS02935 at 732.983 kb on + strand, within CA265_RS02935 at 733.095 kb on - strand, within CA265_RS02935 at 733.100 kb on - strand, within CA265_RS02935 at 733.125 kb on + strand, within CA265_RS02935 at 733.215 kb on + strand, within CA265_RS02935 at 733.238 kb on - strand, within CA265_RS02935 at 733.339 kb on + strand, within CA265_RS02935 at 733.392 kb on - strand, within CA265_RS02935 at 733.394 kb on - strand, within CA265_RS02935 at 733.541 kb on - strand at 733.556 kb on - strand at 733.567 kb on - strand at 733.621 kb on + strand at 733.645 kb on + strand at 733.689 kb on - strand at 733.689 kb on - strand at 733.690 kb on + strand at 733.691 kb on - strand at 733.711 kb on + strand at 733.712 kb on - strand at 733.712 kb on - strand at 733.712 kb on - strand at 733.818 kb on + strand at 733.819 kb on - strand at 733.850 kb on - strand at 733.850 kb on - strand at 733.855 kb on - strand at 733.960 kb on + strand at 734.035 kb on - strand, within CA265_RS02940 at 734.035 kb on - strand, within CA265_RS02940 at 734.106 kb on + strand, within CA265_RS02940 at 734.127 kb on + strand, within CA265_RS02940 at 734.245 kb on + strand, within CA265_RS02940 at 734.250 kb on - strand, within CA265_RS02940 at 734.271 kb on - strand, within CA265_RS02940 at 734.316 kb on + strand, within CA265_RS02940 at 734.372 kb on - strand, within CA265_RS02940 at 734.396 kb on + strand, within CA265_RS02940 at 734.505 kb on - strand, within CA265_RS02940 at 734.506 kb on + strand, within CA265_RS02940 at 734.507 kb on - strand, within CA265_RS02940 at 734.536 kb on + strand, within CA265_RS02940 at 734.675 kb on - strand, within CA265_RS02940 at 734.683 kb on + strand, within CA265_RS02940 at 734.691 kb on + strand, within CA265_RS02940 at 734.692 kb on - strand, within CA265_RS02940 at 734.733 kb on - strand, within CA265_RS02940 at 734.753 kb on - strand, within CA265_RS02940 at 734.778 kb on - strand, within CA265_RS02940 at 734.831 kb on + strand, within CA265_RS02940 at 734.832 kb on - strand, within CA265_RS02940 at 734.832 kb on - strand, within CA265_RS02940 at 734.884 kb on + strand, within CA265_RS02940 at 734.884 kb on + strand, within CA265_RS02940 at 734.884 kb on + strand, within CA265_RS02940 at 734.885 kb on - strand, within CA265_RS02940 at 734.885 kb on - strand, within CA265_RS02940 at 735.020 kb on + strand, within CA265_RS02940 at 735.032 kb on - strand, within CA265_RS02940 at 735.057 kb on + strand, within CA265_RS02940 at 735.067 kb on + strand, within CA265_RS02940 at 735.161 kb on - strand, within CA265_RS02940 at 735.208 kb on + strand, within CA265_RS02940 at 735.214 kb on - strand, within CA265_RS02940 at 735.249 kb on + strand, within CA265_RS02940 at 735.302 kb on + strand, within CA265_RS02940 at 735.303 kb on - strand, within CA265_RS02940 at 735.303 kb on - strand, within CA265_RS02940 at 735.305 kb on + strand, within CA265_RS02940 at 735.327 kb on + strand, within CA265_RS02940 at 735.328 kb on - strand, within CA265_RS02940 at 735.344 kb on - strand, within CA265_RS02940 at 735.344 kb on - strand, within CA265_RS02940 at 735.344 kb on - strand, within CA265_RS02940 at 735.381 kb on + strand, within CA265_RS02940 at 735.381 kb on + strand, within CA265_RS02940 at 735.382 kb on - strand, within CA265_RS02940 at 735.491 kb on - strand, within CA265_RS02940 at 735.559 kb on + strand, within CA265_RS02940 at 735.560 kb on - strand, within CA265_RS02940 at 735.580 kb on + strand, within CA265_RS02940 at 735.580 kb on + strand, within CA265_RS02940 at 735.606 kb on + strand, within CA265_RS02940 at 735.671 kb on + strand, within CA265_RS02940 at 735.709 kb on - strand, within CA265_RS02940 at 735.714 kb on + strand, within CA265_RS02940 at 735.724 kb on + strand, within CA265_RS02940 at 735.724 kb on + strand, within CA265_RS02940 at 735.725 kb on - strand, within CA265_RS02940 at 735.725 kb on - strand, within CA265_RS02940 at 735.749 kb on - strand, within CA265_RS02940 at 735.771 kb on - strand, within CA265_RS02940 at 735.820 kb on + strand at 735.920 kb on - strand at 735.921 kb on + strand at 735.921 kb on + strand at 735.928 kb on - strand at 736.037 kb on + strand at 736.058 kb on - strand at 736.088 kb on + strand at 736.123 kb on + strand, within CA265_RS02945 at 736.129 kb on + strand, within CA265_RS02945 at 736.175 kb on + strand, within CA265_RS02945 at 736.175 kb on + strand, within CA265_RS02945 at 736.176 kb on - strand, within CA265_RS02945 at 736.341 kb on - strand, within CA265_RS02945 at 736.398 kb on + strand at 736.399 kb on - strand at 736.451 kb on - strand at 736.452 kb on + strand at 736.455 kb on - strand at 736.472 kb on - strand at 736.473 kb on + strand at 736.473 kb on + strand at 736.473 kb on + strand at 736.473 kb on + strand at 736.474 kb on - strand at 736.474 kb on - strand at 736.475 kb on + strand at 736.475 kb on + strand at 736.476 kb on - strand at 736.574 kb on - strand at 736.617 kb on + strand, within CA265_RS02950 at 736.810 kb on - strand, within CA265_RS02950 at 736.815 kb on + strand, within CA265_RS02950 at 736.815 kb on + strand, within CA265_RS02950 at 736.817 kb on + strand, within CA265_RS02950 at 736.819 kb on + strand, within CA265_RS02950 at 736.864 kb on + strand, within CA265_RS02950 at 736.864 kb on + strand, within CA265_RS02950 at 736.868 kb on + strand, within CA265_RS02950 at 736.902 kb on - strand, within CA265_RS02950 at 736.918 kb on - strand, within CA265_RS02950 at 736.945 kb on + strand, within CA265_RS02950 at 736.948 kb on - strand, within CA265_RS02950 at 736.996 kb on + strand, within CA265_RS02950
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.06 mg/ml remove 732,781 + CA265_RS02935 0.56 -0.4 732,839 + CA265_RS02935 0.59 +0.5 732,847 - CA265_RS02935 0.59 -0.7 732,890 - CA265_RS02935 0.61 +1.0 732,973 + CA265_RS02935 0.65 -0.6 732,983 + CA265_RS02935 0.66 +0.3 733,095 - CA265_RS02935 0.71 -0.0 733,100 - CA265_RS02935 0.71 +0.5 733,125 + CA265_RS02935 0.73 -1.7 733,215 + CA265_RS02935 0.77 -0.5 733,238 - CA265_RS02935 0.78 -0.1 733,339 + CA265_RS02935 0.83 -2.3 733,392 - CA265_RS02935 0.86 +0.0 733,394 - CA265_RS02935 0.86 -0.0 733,541 - -0.7 733,556 - +0.7 733,567 - +0.1 733,621 + -0.7 733,645 + -0.5 733,689 - -2.1 733,689 - +1.1 733,690 + -0.7 733,691 - +1.4 733,711 + -0.9 733,712 - -0.0 733,712 - -0.1 733,712 - +0.7 733,818 + +0.2 733,819 - +0.6 733,850 - -0.9 733,850 - -0.5 733,855 - -0.8 733,960 + -1.5 734,035 - CA265_RS02940 0.12 +0.1 734,035 - CA265_RS02940 0.12 +0.1 734,106 + CA265_RS02940 0.15 -0.1 734,127 + CA265_RS02940 0.16 -0.4 734,245 + CA265_RS02940 0.22 +0.3 734,250 - CA265_RS02940 0.22 +0.4 734,271 - CA265_RS02940 0.23 +0.5 734,316 + CA265_RS02940 0.25 +0.4 734,372 - CA265_RS02940 0.27 +0.4 734,396 + CA265_RS02940 0.28 +0.4 734,505 - CA265_RS02940 0.33 -1.0 734,506 + CA265_RS02940 0.33 -1.4 734,507 - CA265_RS02940 0.33 -0.2 734,536 + CA265_RS02940 0.35 +0.1 734,675 - CA265_RS02940 0.41 +1.3 734,683 + CA265_RS02940 0.41 +0.1 734,691 + CA265_RS02940 0.42 -0.4 734,692 - CA265_RS02940 0.42 +0.8 734,733 - CA265_RS02940 0.43 +0.1 734,753 - CA265_RS02940 0.44 +0.5 734,778 - CA265_RS02940 0.45 +1.6 734,831 + CA265_RS02940 0.48 -2.0 734,832 - CA265_RS02940 0.48 +0.6 734,832 - CA265_RS02940 0.48 -0.2 734,884 + CA265_RS02940 0.50 +1.7 734,884 + CA265_RS02940 0.50 -1.3 734,884 + CA265_RS02940 0.50 +0.1 734,885 - CA265_RS02940 0.50 -0.1 734,885 - CA265_RS02940 0.50 +0.5 735,020 + CA265_RS02940 0.56 +1.3 735,032 - CA265_RS02940 0.57 +0.4 735,057 + CA265_RS02940 0.58 -1.7 735,067 + CA265_RS02940 0.58 -0.1 735,161 - CA265_RS02940 0.63 -0.3 735,208 + CA265_RS02940 0.65 -0.8 735,214 - CA265_RS02940 0.65 -0.5 735,249 + CA265_RS02940 0.66 +0.7 735,302 + CA265_RS02940 0.69 +0.5 735,303 - CA265_RS02940 0.69 +0.7 735,303 - CA265_RS02940 0.69 +1.2 735,305 + CA265_RS02940 0.69 +1.8 735,327 + CA265_RS02940 0.70 +0.4 735,328 - CA265_RS02940 0.70 -0.3 735,344 - CA265_RS02940 0.71 -0.4 735,344 - CA265_RS02940 0.71 +0.7 735,344 - CA265_RS02940 0.71 +0.4 735,381 + CA265_RS02940 0.72 +2.9 735,381 + CA265_RS02940 0.72 +0.5 735,382 - CA265_RS02940 0.72 +0.7 735,491 - CA265_RS02940 0.77 +0.8 735,559 + CA265_RS02940 0.80 +0.4 735,560 - CA265_RS02940 0.80 +0.0 735,580 + CA265_RS02940 0.81 -0.1 735,580 + CA265_RS02940 0.81 -1.0 735,606 + CA265_RS02940 0.82 +0.0 735,671 + CA265_RS02940 0.85 +0.6 735,709 - CA265_RS02940 0.87 +2.1 735,714 + CA265_RS02940 0.87 +0.2 735,724 + CA265_RS02940 0.88 -0.0 735,724 + CA265_RS02940 0.88 -0.3 735,725 - CA265_RS02940 0.88 -1.5 735,725 - CA265_RS02940 0.88 -0.3 735,749 - CA265_RS02940 0.89 -0.6 735,771 - CA265_RS02940 0.90 -1.3 735,820 + +1.3 735,920 - +0.5 735,921 + -0.3 735,921 + +0.1 735,928 - -0.1 736,037 + -0.1 736,058 - -1.2 736,088 + +0.6 736,123 + CA265_RS02945 0.11 -0.6 736,129 + CA265_RS02945 0.13 +1.0 736,175 + CA265_RS02945 0.28 -0.2 736,175 + CA265_RS02945 0.28 +1.1 736,176 - CA265_RS02945 0.28 +2.1 736,341 - CA265_RS02945 0.81 +0.3 736,398 + +1.1 736,399 - -0.7 736,451 - +0.7 736,452 + +0.0 736,455 - -0.2 736,472 - -0.1 736,473 + +1.6 736,473 + +0.4 736,473 + +0.3 736,473 + +0.5 736,474 - +0.9 736,474 - +0.4 736,475 + -0.6 736,475 + +0.2 736,476 - -1.3 736,574 - -0.1 736,617 + CA265_RS02950 0.11 -0.4 736,810 - CA265_RS02950 0.27 +1.1 736,815 + CA265_RS02950 0.28 -1.0 736,815 + CA265_RS02950 0.28 +0.1 736,817 + CA265_RS02950 0.28 +0.3 736,819 + CA265_RS02950 0.28 -0.3 736,864 + CA265_RS02950 0.32 -0.8 736,864 + CA265_RS02950 0.32 -0.5 736,868 + CA265_RS02950 0.32 +0.1 736,902 - CA265_RS02950 0.35 -0.6 736,918 - CA265_RS02950 0.36 -1.7 736,945 + CA265_RS02950 0.38 +0.7 736,948 - CA265_RS02950 0.38 -0.6 736,996 + CA265_RS02950 0.42 -0.9
Or see this region's nucleotide sequence