Experiment: R2A with Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS02540 and CA265_RS02545 are separated by 69 nucleotides CA265_RS02545 and CA265_RS02550 are separated by 246 nucleotides CA265_RS02550 and CA265_RS02555 are separated by 59 nucleotides
CA265_RS02540: CA265_RS02540 - hypothetical protein, at 636,933 to 638,609
_RS02540
CA265_RS02545: CA265_RS02545 - hypothetical protein, at 638,679 to 641,642
_RS02545
CA265_RS02550: CA265_RS02550 - tRNA-Phe, at 641,889 to 641,961
_RS02550
CA265_RS02555: CA265_RS02555 - ATPase, at 642,021 to 642,470
_RS02555
Position (kb) 638
639
640
641
642 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 637.811 kb on - strand, within CA265_RS02540 at 637.823 kb on + strand, within CA265_RS02540 at 637.846 kb on - strand, within CA265_RS02540 at 637.847 kb on + strand, within CA265_RS02540 at 637.847 kb on + strand, within CA265_RS02540 at 637.848 kb on - strand, within CA265_RS02540 at 637.929 kb on - strand, within CA265_RS02540 at 637.935 kb on + strand, within CA265_RS02540 at 637.935 kb on + strand, within CA265_RS02540 at 638.011 kb on + strand, within CA265_RS02540 at 638.012 kb on - strand, within CA265_RS02540 at 638.014 kb on - strand, within CA265_RS02540 at 638.014 kb on - strand, within CA265_RS02540 at 638.015 kb on + strand, within CA265_RS02540 at 638.016 kb on - strand, within CA265_RS02540 at 638.016 kb on - strand, within CA265_RS02540 at 638.053 kb on + strand, within CA265_RS02540 at 638.143 kb on - strand, within CA265_RS02540 at 638.145 kb on - strand, within CA265_RS02540 at 638.180 kb on + strand, within CA265_RS02540 at 638.237 kb on + strand, within CA265_RS02540 at 638.237 kb on + strand, within CA265_RS02540 at 638.237 kb on + strand, within CA265_RS02540 at 638.356 kb on - strand, within CA265_RS02540 at 638.440 kb on - strand, within CA265_RS02540 at 638.461 kb on + strand at 638.469 kb on - strand at 638.488 kb on + strand at 638.488 kb on + strand at 638.489 kb on - strand at 638.489 kb on - strand at 638.489 kb on - strand at 638.522 kb on - strand at 638.522 kb on - strand at 638.522 kb on - strand at 638.522 kb on - strand at 638.563 kb on + strand at 638.571 kb on - strand at 638.573 kb on + strand at 638.669 kb on + strand at 638.674 kb on + strand at 638.686 kb on + strand at 638.723 kb on - strand at 638.801 kb on + strand at 638.801 kb on + strand at 638.802 kb on - strand at 638.803 kb on + strand at 638.849 kb on + strand at 639.064 kb on + strand, within CA265_RS02545 at 639.129 kb on - strand, within CA265_RS02545 at 639.151 kb on + strand, within CA265_RS02545 at 639.151 kb on + strand, within CA265_RS02545 at 639.207 kb on - strand, within CA265_RS02545 at 639.276 kb on - strand, within CA265_RS02545 at 639.278 kb on - strand, within CA265_RS02545 at 639.278 kb on - strand, within CA265_RS02545 at 639.326 kb on - strand, within CA265_RS02545 at 639.332 kb on + strand, within CA265_RS02545 at 639.336 kb on + strand, within CA265_RS02545 at 639.432 kb on - strand, within CA265_RS02545 at 639.498 kb on + strand, within CA265_RS02545 at 639.516 kb on - strand, within CA265_RS02545 at 639.584 kb on + strand, within CA265_RS02545 at 639.591 kb on + strand, within CA265_RS02545 at 639.591 kb on + strand, within CA265_RS02545 at 639.592 kb on - strand, within CA265_RS02545 at 639.699 kb on + strand, within CA265_RS02545 at 639.701 kb on - strand, within CA265_RS02545 at 639.823 kb on + strand, within CA265_RS02545 at 639.858 kb on + strand, within CA265_RS02545 at 639.905 kb on + strand, within CA265_RS02545 at 639.918 kb on - strand, within CA265_RS02545 at 639.983 kb on - strand, within CA265_RS02545 at 640.001 kb on + strand, within CA265_RS02545 at 640.147 kb on + strand, within CA265_RS02545 at 640.162 kb on + strand, within CA265_RS02545 at 640.267 kb on + strand, within CA265_RS02545 at 640.308 kb on + strand, within CA265_RS02545 at 640.308 kb on + strand, within CA265_RS02545 at 640.309 kb on - strand, within CA265_RS02545 at 640.312 kb on + strand, within CA265_RS02545 at 640.424 kb on + strand, within CA265_RS02545 at 640.424 kb on + strand, within CA265_RS02545 at 640.424 kb on + strand, within CA265_RS02545 at 640.469 kb on + strand, within CA265_RS02545 at 640.470 kb on - strand, within CA265_RS02545 at 640.472 kb on + strand, within CA265_RS02545 at 640.511 kb on - strand, within CA265_RS02545 at 640.577 kb on + strand, within CA265_RS02545 at 640.610 kb on + strand, within CA265_RS02545 at 640.611 kb on - strand, within CA265_RS02545 at 640.745 kb on + strand, within CA265_RS02545 at 640.745 kb on + strand, within CA265_RS02545 at 640.745 kb on + strand, within CA265_RS02545 at 640.746 kb on - strand, within CA265_RS02545 at 640.746 kb on - strand, within CA265_RS02545 at 640.759 kb on - strand, within CA265_RS02545 at 640.877 kb on + strand, within CA265_RS02545 at 640.941 kb on - strand, within CA265_RS02545 at 641.014 kb on + strand, within CA265_RS02545 at 641.087 kb on + strand, within CA265_RS02545 at 641.090 kb on + strand, within CA265_RS02545 at 641.237 kb on + strand, within CA265_RS02545 at 641.243 kb on + strand, within CA265_RS02545 at 641.244 kb on - strand, within CA265_RS02545 at 641.294 kb on + strand, within CA265_RS02545 at 641.462 kb on + strand at 641.468 kb on - strand at 641.505 kb on + strand at 641.505 kb on + strand at 641.506 kb on - strand at 641.584 kb on + strand at 641.589 kb on - strand at 641.589 kb on - strand at 641.696 kb on - strand at 641.696 kb on - strand at 641.696 kb on - strand at 641.743 kb on - strand at 641.743 kb on - strand at 641.867 kb on + strand at 641.897 kb on - strand, within CA265_RS02550 at 641.964 kb on + strand at 641.981 kb on - strand at 642.018 kb on + strand at 642.030 kb on + strand at 642.037 kb on + strand at 642.037 kb on + strand at 642.071 kb on + strand, within CA265_RS02555 at 642.208 kb on - strand, within CA265_RS02555 at 642.228 kb on + strand, within CA265_RS02555 at 642.386 kb on + strand, within CA265_RS02555 at 642.387 kb on - strand, within CA265_RS02555 at 642.391 kb on + strand, within CA265_RS02555 at 642.453 kb on - strand at 642.498 kb on + strand at 642.499 kb on - strand at 642.504 kb on + strand at 642.554 kb on + strand at 642.555 kb on - strand at 642.598 kb on - strand at 642.602 kb on - strand at 642.602 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.06 mg/ml remove 637,811 - CA265_RS02540 0.52 -1.2 637,823 + CA265_RS02540 0.53 +1.3 637,846 - CA265_RS02540 0.54 -0.5 637,847 + CA265_RS02540 0.55 +0.7 637,847 + CA265_RS02540 0.55 +1.0 637,848 - CA265_RS02540 0.55 +0.4 637,929 - CA265_RS02540 0.59 +0.9 637,935 + CA265_RS02540 0.60 +0.3 637,935 + CA265_RS02540 0.60 -0.1 638,011 + CA265_RS02540 0.64 +0.5 638,012 - CA265_RS02540 0.64 +1.9 638,014 - CA265_RS02540 0.64 +0.5 638,014 - CA265_RS02540 0.64 -0.7 638,015 + CA265_RS02540 0.65 -0.5 638,016 - CA265_RS02540 0.65 -0.1 638,016 - CA265_RS02540 0.65 +0.6 638,053 + CA265_RS02540 0.67 +0.8 638,143 - CA265_RS02540 0.72 +0.1 638,145 - CA265_RS02540 0.72 -0.4 638,180 + CA265_RS02540 0.74 -0.0 638,237 + CA265_RS02540 0.78 -0.2 638,237 + CA265_RS02540 0.78 -1.2 638,237 + CA265_RS02540 0.78 +1.4 638,356 - CA265_RS02540 0.85 +0.4 638,440 - CA265_RS02540 0.90 +0.4 638,461 + +0.8 638,469 - -0.7 638,488 + +1.3 638,488 + +0.0 638,489 - -0.7 638,489 - +0.2 638,489 - +0.3 638,522 - -0.8 638,522 - +0.1 638,522 - +1.5 638,522 - -1.0 638,563 + +1.0 638,571 - -0.3 638,573 + -0.9 638,669 + +0.5 638,674 + -0.1 638,686 + -1.4 638,723 - +0.8 638,801 + +0.1 638,801 + -0.6 638,802 - +0.4 638,803 + +1.3 638,849 + -0.7 639,064 + CA265_RS02545 0.13 -0.4 639,129 - CA265_RS02545 0.15 -0.3 639,151 + CA265_RS02545 0.16 +0.4 639,151 + CA265_RS02545 0.16 +0.6 639,207 - CA265_RS02545 0.18 -1.1 639,276 - CA265_RS02545 0.20 +0.9 639,278 - CA265_RS02545 0.20 -0.1 639,278 - CA265_RS02545 0.20 +0.9 639,326 - CA265_RS02545 0.22 +0.5 639,332 + CA265_RS02545 0.22 +0.2 639,336 + CA265_RS02545 0.22 -0.1 639,432 - CA265_RS02545 0.25 -0.6 639,498 + CA265_RS02545 0.28 -0.0 639,516 - CA265_RS02545 0.28 +1.2 639,584 + CA265_RS02545 0.31 +0.4 639,591 + CA265_RS02545 0.31 +0.0 639,591 + CA265_RS02545 0.31 +0.5 639,592 - CA265_RS02545 0.31 -0.8 639,699 + CA265_RS02545 0.34 +1.6 639,701 - CA265_RS02545 0.34 -1.2 639,823 + CA265_RS02545 0.39 -0.3 639,858 + CA265_RS02545 0.40 +0.2 639,905 + CA265_RS02545 0.41 +0.3 639,918 - CA265_RS02545 0.42 +0.6 639,983 - CA265_RS02545 0.44 -2.3 640,001 + CA265_RS02545 0.45 -0.2 640,147 + CA265_RS02545 0.50 +0.6 640,162 + CA265_RS02545 0.50 +1.8 640,267 + CA265_RS02545 0.54 +0.3 640,308 + CA265_RS02545 0.55 -1.0 640,308 + CA265_RS02545 0.55 +0.9 640,309 - CA265_RS02545 0.55 -1.8 640,312 + CA265_RS02545 0.55 +0.5 640,424 + CA265_RS02545 0.59 +0.3 640,424 + CA265_RS02545 0.59 -0.2 640,424 + CA265_RS02545 0.59 -1.1 640,469 + CA265_RS02545 0.60 +0.1 640,470 - CA265_RS02545 0.60 -0.7 640,472 + CA265_RS02545 0.60 -0.1 640,511 - CA265_RS02545 0.62 +0.5 640,577 + CA265_RS02545 0.64 +0.2 640,610 + CA265_RS02545 0.65 +1.7 640,611 - CA265_RS02545 0.65 -1.3 640,745 + CA265_RS02545 0.70 +0.9 640,745 + CA265_RS02545 0.70 +1.0 640,745 + CA265_RS02545 0.70 +0.2 640,746 - CA265_RS02545 0.70 +0.6 640,746 - CA265_RS02545 0.70 +0.1 640,759 - CA265_RS02545 0.70 -1.1 640,877 + CA265_RS02545 0.74 +0.5 640,941 - CA265_RS02545 0.76 -0.5 641,014 + CA265_RS02545 0.79 +0.9 641,087 + CA265_RS02545 0.81 -0.1 641,090 + CA265_RS02545 0.81 -0.3 641,237 + CA265_RS02545 0.86 -0.1 641,243 + CA265_RS02545 0.87 +0.3 641,244 - CA265_RS02545 0.87 -1.2 641,294 + CA265_RS02545 0.88 +0.8 641,462 + -0.8 641,468 - -0.0 641,505 + +0.8 641,505 + +1.0 641,506 - +0.8 641,584 + +0.6 641,589 - +0.2 641,589 - -1.0 641,696 - -0.7 641,696 - +3.7 641,696 - +0.4 641,743 - -0.7 641,743 - +0.2 641,867 + -0.4 641,897 - CA265_RS02550 0.11 -1.1 641,964 + +1.3 641,981 - +0.0 642,018 + -0.6 642,030 + -0.6 642,037 + -0.2 642,037 + +1.2 642,071 + CA265_RS02555 0.11 -0.3 642,208 - CA265_RS02555 0.42 -2.1 642,228 + CA265_RS02555 0.46 -0.1 642,386 + CA265_RS02555 0.81 -0.4 642,387 - CA265_RS02555 0.81 -0.1 642,391 + CA265_RS02555 0.82 -0.6 642,453 - -0.7 642,498 + +0.6 642,499 - +0.5 642,504 + -0.9 642,554 + +0.2 642,555 - +0.2 642,598 - +0.3 642,602 - +0.3 642,602 - -1.4
Or see this region's nucleotide sequence