Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS02540

Experiment: R2A with Vancomycin 0.06 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS02535 and CA265_RS02540 are separated by 27 nucleotidesCA265_RS02540 and CA265_RS02545 are separated by 69 nucleotides CA265_RS02535: CA265_RS02535 - hypothetical protein, at 634,848 to 636,905 _RS02535 CA265_RS02540: CA265_RS02540 - hypothetical protein, at 636,933 to 638,609 _RS02540 CA265_RS02545: CA265_RS02545 - hypothetical protein, at 638,679 to 641,642 _RS02545 Position (kb) 636 637 638 639Strain fitness (log2 ratio) -2 -1 0 1 2at 636.081 kb on + strand, within CA265_RS02535at 636.112 kb on + strand, within CA265_RS02535at 636.113 kb on - strand, within CA265_RS02535at 636.113 kb on - strand, within CA265_RS02535at 636.116 kb on + strand, within CA265_RS02535at 636.190 kb on + strand, within CA265_RS02535at 636.191 kb on - strand, within CA265_RS02535at 636.196 kb on + strand, within CA265_RS02535at 636.205 kb on - strand, within CA265_RS02535at 636.234 kb on - strand, within CA265_RS02535at 636.406 kb on - strand, within CA265_RS02535at 636.417 kb on - strand, within CA265_RS02535at 636.424 kb on + strand, within CA265_RS02535at 636.425 kb on - strand, within CA265_RS02535at 636.426 kb on + strand, within CA265_RS02535at 636.426 kb on + strand, within CA265_RS02535at 636.466 kb on - strand, within CA265_RS02535at 636.480 kb on - strand, within CA265_RS02535at 636.488 kb on + strand, within CA265_RS02535at 636.539 kb on - strand, within CA265_RS02535at 636.558 kb on + strand, within CA265_RS02535at 636.559 kb on - strand, within CA265_RS02535at 636.559 kb on - strand, within CA265_RS02535at 636.652 kb on + strand, within CA265_RS02535at 636.714 kb on + strandat 636.740 kb on + strandat 636.816 kb on + strandat 636.833 kb on - strandat 636.836 kb on + strandat 636.837 kb on - strandat 636.900 kb on - strandat 636.903 kb on + strandat 636.933 kb on - strandat 636.933 kb on - strandat 636.933 kb on - strandat 637.076 kb on - strandat 637.082 kb on + strandat 637.083 kb on - strandat 637.155 kb on - strand, within CA265_RS02540at 637.251 kb on - strand, within CA265_RS02540at 637.342 kb on + strand, within CA265_RS02540at 637.354 kb on - strand, within CA265_RS02540at 637.354 kb on - strand, within CA265_RS02540at 637.355 kb on + strand, within CA265_RS02540at 637.355 kb on + strand, within CA265_RS02540at 637.355 kb on + strand, within CA265_RS02540at 637.356 kb on - strand, within CA265_RS02540at 637.356 kb on - strand, within CA265_RS02540at 637.400 kb on - strand, within CA265_RS02540at 637.400 kb on - strand, within CA265_RS02540at 637.594 kb on - strand, within CA265_RS02540at 637.659 kb on - strand, within CA265_RS02540at 637.811 kb on - strand, within CA265_RS02540at 637.823 kb on + strand, within CA265_RS02540at 637.846 kb on - strand, within CA265_RS02540at 637.847 kb on + strand, within CA265_RS02540at 637.847 kb on + strand, within CA265_RS02540at 637.848 kb on - strand, within CA265_RS02540at 637.929 kb on - strand, within CA265_RS02540at 637.935 kb on + strand, within CA265_RS02540at 637.935 kb on + strand, within CA265_RS02540at 638.011 kb on + strand, within CA265_RS02540at 638.012 kb on - strand, within CA265_RS02540at 638.014 kb on - strand, within CA265_RS02540at 638.014 kb on - strand, within CA265_RS02540at 638.015 kb on + strand, within CA265_RS02540at 638.016 kb on - strand, within CA265_RS02540at 638.016 kb on - strand, within CA265_RS02540at 638.053 kb on + strand, within CA265_RS02540at 638.143 kb on - strand, within CA265_RS02540at 638.145 kb on - strand, within CA265_RS02540at 638.180 kb on + strand, within CA265_RS02540at 638.237 kb on + strand, within CA265_RS02540at 638.237 kb on + strand, within CA265_RS02540at 638.237 kb on + strand, within CA265_RS02540at 638.356 kb on - strand, within CA265_RS02540at 638.440 kb on - strand, within CA265_RS02540at 638.461 kb on + strandat 638.469 kb on - strandat 638.488 kb on + strandat 638.488 kb on + strandat 638.489 kb on - strandat 638.489 kb on - strandat 638.489 kb on - strandat 638.522 kb on - strandat 638.522 kb on - strandat 638.522 kb on - strandat 638.522 kb on - strandat 638.563 kb on + strandat 638.571 kb on - strandat 638.573 kb on + strandat 638.669 kb on + strandat 638.674 kb on + strandat 638.686 kb on + strandat 638.723 kb on - strandat 638.801 kb on + strandat 638.801 kb on + strandat 638.802 kb on - strandat 638.803 kb on + strandat 638.849 kb on + strandat 639.064 kb on + strand, within CA265_RS02545at 639.129 kb on - strand, within CA265_RS02545at 639.151 kb on + strand, within CA265_RS02545at 639.151 kb on + strand, within CA265_RS02545at 639.207 kb on - strand, within CA265_RS02545at 639.276 kb on - strand, within CA265_RS02545at 639.278 kb on - strand, within CA265_RS02545at 639.278 kb on - strand, within CA265_RS02545at 639.326 kb on - strand, within CA265_RS02545at 639.332 kb on + strand, within CA265_RS02545at 639.336 kb on + strand, within CA265_RS02545at 639.432 kb on - strand, within CA265_RS02545at 639.498 kb on + strand, within CA265_RS02545at 639.516 kb on - strand, within CA265_RS02545at 639.584 kb on + strand, within CA265_RS02545at 639.591 kb on + strand, within CA265_RS02545at 639.591 kb on + strand, within CA265_RS02545at 639.592 kb on - strand, within CA265_RS02545

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.06 mg/ml
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636,081 + CA265_RS02535 0.60 -1.2
636,112 + CA265_RS02535 0.61 +0.7
636,113 - CA265_RS02535 0.61 +0.0
636,113 - CA265_RS02535 0.61 +0.4
636,116 + CA265_RS02535 0.62 -0.4
636,190 + CA265_RS02535 0.65 +1.3
636,191 - CA265_RS02535 0.65 -0.7
636,196 + CA265_RS02535 0.66 +0.0
636,205 - CA265_RS02535 0.66 -0.2
636,234 - CA265_RS02535 0.67 -0.1
636,406 - CA265_RS02535 0.76 +1.1
636,417 - CA265_RS02535 0.76 -0.1
636,424 + CA265_RS02535 0.77 +0.3
636,425 - CA265_RS02535 0.77 +0.3
636,426 + CA265_RS02535 0.77 -0.6
636,426 + CA265_RS02535 0.77 -0.2
636,466 - CA265_RS02535 0.79 -0.0
636,480 - CA265_RS02535 0.79 +1.0
636,488 + CA265_RS02535 0.80 -0.0
636,539 - CA265_RS02535 0.82 -1.2
636,558 + CA265_RS02535 0.83 +1.4
636,559 - CA265_RS02535 0.83 +0.1
636,559 - CA265_RS02535 0.83 +0.3
636,652 + CA265_RS02535 0.88 -0.1
636,714 + -1.0
636,740 + -1.9
636,816 + -0.2
636,833 - +0.6
636,836 + -1.5
636,837 - -0.2
636,900 - +0.1
636,903 + +0.2
636,933 - +0.3
636,933 - +0.7
636,933 - +0.8
637,076 - -0.4
637,082 + +0.3
637,083 - -2.2
637,155 - CA265_RS02540 0.13 +0.5
637,251 - CA265_RS02540 0.19 -0.4
637,342 + CA265_RS02540 0.24 +1.7
637,354 - CA265_RS02540 0.25 +0.2
637,354 - CA265_RS02540 0.25 +0.8
637,355 + CA265_RS02540 0.25 +1.9
637,355 + CA265_RS02540 0.25 +0.9
637,355 + CA265_RS02540 0.25 +0.3
637,356 - CA265_RS02540 0.25 -0.6
637,356 - CA265_RS02540 0.25 +0.3
637,400 - CA265_RS02540 0.28 +0.2
637,400 - CA265_RS02540 0.28 -0.2
637,594 - CA265_RS02540 0.39 +1.3
637,659 - CA265_RS02540 0.43 -0.6
637,811 - CA265_RS02540 0.52 -1.2
637,823 + CA265_RS02540 0.53 +1.3
637,846 - CA265_RS02540 0.54 -0.5
637,847 + CA265_RS02540 0.55 +0.7
637,847 + CA265_RS02540 0.55 +1.0
637,848 - CA265_RS02540 0.55 +0.4
637,929 - CA265_RS02540 0.59 +0.9
637,935 + CA265_RS02540 0.60 +0.3
637,935 + CA265_RS02540 0.60 -0.1
638,011 + CA265_RS02540 0.64 +0.5
638,012 - CA265_RS02540 0.64 +1.9
638,014 - CA265_RS02540 0.64 +0.5
638,014 - CA265_RS02540 0.64 -0.7
638,015 + CA265_RS02540 0.65 -0.5
638,016 - CA265_RS02540 0.65 -0.1
638,016 - CA265_RS02540 0.65 +0.6
638,053 + CA265_RS02540 0.67 +0.8
638,143 - CA265_RS02540 0.72 +0.1
638,145 - CA265_RS02540 0.72 -0.4
638,180 + CA265_RS02540 0.74 -0.0
638,237 + CA265_RS02540 0.78 -0.2
638,237 + CA265_RS02540 0.78 -1.2
638,237 + CA265_RS02540 0.78 +1.4
638,356 - CA265_RS02540 0.85 +0.4
638,440 - CA265_RS02540 0.90 +0.4
638,461 + +0.8
638,469 - -0.7
638,488 + +1.3
638,488 + +0.0
638,489 - -0.7
638,489 - +0.2
638,489 - +0.3
638,522 - -0.8
638,522 - +0.1
638,522 - +1.5
638,522 - -1.0
638,563 + +1.0
638,571 - -0.3
638,573 + -0.9
638,669 + +0.5
638,674 + -0.1
638,686 + -1.4
638,723 - +0.8
638,801 + +0.1
638,801 + -0.6
638,802 - +0.4
638,803 + +1.3
638,849 + -0.7
639,064 + CA265_RS02545 0.13 -0.4
639,129 - CA265_RS02545 0.15 -0.3
639,151 + CA265_RS02545 0.16 +0.4
639,151 + CA265_RS02545 0.16 +0.6
639,207 - CA265_RS02545 0.18 -1.1
639,276 - CA265_RS02545 0.20 +0.9
639,278 - CA265_RS02545 0.20 -0.1
639,278 - CA265_RS02545 0.20 +0.9
639,326 - CA265_RS02545 0.22 +0.5
639,332 + CA265_RS02545 0.22 +0.2
639,336 + CA265_RS02545 0.22 -0.1
639,432 - CA265_RS02545 0.25 -0.6
639,498 + CA265_RS02545 0.28 -0.0
639,516 - CA265_RS02545 0.28 +1.2
639,584 + CA265_RS02545 0.31 +0.4
639,591 + CA265_RS02545 0.31 +0.0
639,591 + CA265_RS02545 0.31 +0.5
639,592 - CA265_RS02545 0.31 -0.8

Or see this region's nucleotide sequence