Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS02480

Experiment: R2A with Vancomycin 0.06 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS02475 and CA265_RS02480 are separated by 524 nucleotidesCA265_RS02480 and CA265_RS02485 are separated by 215 nucleotides CA265_RS02475: CA265_RS02475 - hypothetical protein, at 611,147 to 612,538 _RS02475 CA265_RS02480: CA265_RS02480 - beta-galactosidase, at 613,063 to 614,925 _RS02480 CA265_RS02485: CA265_RS02485 - hypothetical protein, at 615,141 to 619,184 _RS02485 Position (kb) 613 614 615Strain fitness (log2 ratio) -2 -1 0 1 2at 612.156 kb on - strand, within CA265_RS02475at 612.247 kb on + strand, within CA265_RS02475at 612.353 kb on - strand, within CA265_RS02475at 612.353 kb on - strand, within CA265_RS02475at 612.354 kb on + strand, within CA265_RS02475at 612.354 kb on + strand, within CA265_RS02475at 612.355 kb on - strand, within CA265_RS02475at 612.355 kb on - strand, within CA265_RS02475at 612.356 kb on + strand, within CA265_RS02475at 612.356 kb on + strand, within CA265_RS02475at 612.356 kb on + strand, within CA265_RS02475at 612.357 kb on - strand, within CA265_RS02475at 612.357 kb on - strand, within CA265_RS02475at 612.357 kb on - strand, within CA265_RS02475at 612.360 kb on - strand, within CA265_RS02475at 612.576 kb on + strandat 612.582 kb on + strandat 612.583 kb on - strandat 612.588 kb on + strandat 612.589 kb on - strandat 612.591 kb on - strandat 612.644 kb on - strandat 612.688 kb on - strandat 612.728 kb on + strandat 612.834 kb on - strandat 612.834 kb on - strandat 612.883 kb on + strandat 612.923 kb on + strandat 612.928 kb on - strandat 612.941 kb on - strandat 613.091 kb on + strandat 613.278 kb on + strand, within CA265_RS02480at 613.278 kb on + strand, within CA265_RS02480at 613.279 kb on - strand, within CA265_RS02480at 613.292 kb on - strand, within CA265_RS02480at 613.347 kb on + strand, within CA265_RS02480at 613.378 kb on - strand, within CA265_RS02480at 613.417 kb on + strandat 613.421 kb on + strand, within CA265_RS02480at 613.422 kb on - strand, within CA265_RS02480at 613.582 kb on - strand, within CA265_RS02480at 613.583 kb on + strand, within CA265_RS02480at 613.584 kb on - strand, within CA265_RS02480at 613.585 kb on - strand, within CA265_RS02480at 613.610 kb on - strand, within CA265_RS02480at 613.662 kb on + strand, within CA265_RS02480at 613.688 kb on + strand, within CA265_RS02480at 613.689 kb on - strand, within CA265_RS02480at 613.689 kb on - strand, within CA265_RS02480at 613.690 kb on + strand, within CA265_RS02480at 613.690 kb on + strand, within CA265_RS02480at 613.691 kb on - strand, within CA265_RS02480at 613.691 kb on - strand, within CA265_RS02480at 613.692 kb on + strand, within CA265_RS02480at 613.692 kb on + strand, within CA265_RS02480at 613.692 kb on + strand, within CA265_RS02480at 613.945 kb on + strand, within CA265_RS02480at 613.946 kb on - strand, within CA265_RS02480at 613.947 kb on + strand, within CA265_RS02480at 614.028 kb on + strand, within CA265_RS02480at 614.028 kb on + strand, within CA265_RS02480at 614.032 kb on + strand, within CA265_RS02480at 614.032 kb on + strand, within CA265_RS02480at 614.032 kb on + strand, within CA265_RS02480at 614.038 kb on + strand, within CA265_RS02480at 614.177 kb on + strand, within CA265_RS02480at 614.227 kb on + strand, within CA265_RS02480at 614.269 kb on + strand, within CA265_RS02480at 614.345 kb on - strand, within CA265_RS02480at 614.406 kb on + strand, within CA265_RS02480at 614.412 kb on - strand, within CA265_RS02480at 614.416 kb on - strand, within CA265_RS02480at 614.418 kb on - strand, within CA265_RS02480at 614.526 kb on - strand, within CA265_RS02480at 614.526 kb on - strand, within CA265_RS02480at 614.625 kb on + strand, within CA265_RS02480at 614.691 kb on + strand, within CA265_RS02480at 614.691 kb on + strand, within CA265_RS02480at 614.691 kb on + strand, within CA265_RS02480at 614.692 kb on - strand, within CA265_RS02480at 614.692 kb on - strand, within CA265_RS02480at 614.692 kb on - strand, within CA265_RS02480at 614.712 kb on - strand, within CA265_RS02480at 614.737 kb on - strand, within CA265_RS02480at 614.740 kb on + strandat 614.790 kb on - strandat 614.793 kb on + strandat 614.794 kb on - strandat 614.794 kb on - strandat 614.817 kb on - strandat 614.858 kb on + strandat 614.929 kb on - strandat 614.931 kb on - strandat 614.934 kb on + strandat 614.949 kb on + strandat 614.965 kb on + strandat 614.968 kb on - strandat 614.973 kb on + strandat 614.990 kb on + strandat 614.991 kb on - strandat 614.991 kb on - strandat 615.014 kb on - strandat 615.040 kb on + strandat 615.043 kb on - strandat 615.097 kb on - strandat 615.130 kb on - strandat 615.164 kb on - strandat 615.164 kb on - strandat 615.274 kb on - strandat 615.294 kb on - strandat 615.371 kb on + strandat 615.371 kb on + strandat 615.372 kb on - strandat 615.455 kb on - strandat 615.507 kb on + strandat 615.507 kb on + strandat 615.751 kb on - strand, within CA265_RS02485at 615.757 kb on - strand, within CA265_RS02485at 615.874 kb on - strand, within CA265_RS02485at 615.875 kb on + strand, within CA265_RS02485at 615.876 kb on - strand, within CA265_RS02485at 615.887 kb on + strand, within CA265_RS02485at 615.888 kb on - strand, within CA265_RS02485at 615.904 kb on - strand, within CA265_RS02485at 615.904 kb on - strand, within CA265_RS02485

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.06 mg/ml
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612,156 - CA265_RS02475 0.72 -1.1
612,247 + CA265_RS02475 0.79 +0.3
612,353 - CA265_RS02475 0.87 +0.2
612,353 - CA265_RS02475 0.87 +0.0
612,354 + CA265_RS02475 0.87 -0.4
612,354 + CA265_RS02475 0.87 -0.4
612,355 - CA265_RS02475 0.87 -0.6
612,355 - CA265_RS02475 0.87 -0.1
612,356 + CA265_RS02475 0.87 +0.2
612,356 + CA265_RS02475 0.87 +0.3
612,356 + CA265_RS02475 0.87 -0.7
612,357 - CA265_RS02475 0.87 +0.3
612,357 - CA265_RS02475 0.87 -0.5
612,357 - CA265_RS02475 0.87 +0.7
612,360 - CA265_RS02475 0.87 -0.6
612,576 + +0.3
612,582 + -0.8
612,583 - -0.1
612,588 + +0.6
612,589 - -0.5
612,591 - +0.3
612,644 - -0.6
612,688 - +0.0
612,728 + +0.8
612,834 - +0.3
612,834 - +0.4
612,883 + +0.9
612,923 + +0.2
612,928 - -0.7
612,941 - -0.9
613,091 + +0.1
613,278 + CA265_RS02480 0.12 +0.3
613,278 + CA265_RS02480 0.12 +0.5
613,279 - CA265_RS02480 0.12 +0.8
613,292 - CA265_RS02480 0.12 +0.5
613,347 + CA265_RS02480 0.15 +0.7
613,378 - CA265_RS02480 0.17 -0.5
613,417 + +2.1
613,421 + CA265_RS02480 0.19 -0.7
613,422 - CA265_RS02480 0.19 +0.2
613,582 - CA265_RS02480 0.28 +0.8
613,583 + CA265_RS02480 0.28 +0.3
613,584 - CA265_RS02480 0.28 -0.6
613,585 - CA265_RS02480 0.28 -0.4
613,610 - CA265_RS02480 0.29 -1.1
613,662 + CA265_RS02480 0.32 +0.1
613,688 + CA265_RS02480 0.34 +0.2
613,689 - CA265_RS02480 0.34 -1.0
613,689 - CA265_RS02480 0.34 -0.9
613,690 + CA265_RS02480 0.34 +1.0
613,690 + CA265_RS02480 0.34 -0.5
613,691 - CA265_RS02480 0.34 +0.8
613,691 - CA265_RS02480 0.34 -1.9
613,692 + CA265_RS02480 0.34 -0.5
613,692 + CA265_RS02480 0.34 +0.3
613,692 + CA265_RS02480 0.34 -0.5
613,945 + CA265_RS02480 0.47 +0.4
613,946 - CA265_RS02480 0.47 +0.5
613,947 + CA265_RS02480 0.47 -0.8
614,028 + CA265_RS02480 0.52 +0.5
614,028 + CA265_RS02480 0.52 -0.6
614,032 + CA265_RS02480 0.52 -0.9
614,032 + CA265_RS02480 0.52 +0.3
614,032 + CA265_RS02480 0.52 -0.3
614,038 + CA265_RS02480 0.52 -0.9
614,177 + CA265_RS02480 0.60 -0.6
614,227 + CA265_RS02480 0.62 +0.1
614,269 + CA265_RS02480 0.65 +0.2
614,345 - CA265_RS02480 0.69 +0.3
614,406 + CA265_RS02480 0.72 -0.2
614,412 - CA265_RS02480 0.72 +1.0
614,416 - CA265_RS02480 0.73 -0.1
614,418 - CA265_RS02480 0.73 +0.3
614,526 - CA265_RS02480 0.79 -1.8
614,526 - CA265_RS02480 0.79 -0.0
614,625 + CA265_RS02480 0.84 -0.5
614,691 + CA265_RS02480 0.87 +1.0
614,691 + CA265_RS02480 0.87 -0.4
614,691 + CA265_RS02480 0.87 -0.6
614,692 - CA265_RS02480 0.87 -2.1
614,692 - CA265_RS02480 0.87 -0.5
614,692 - CA265_RS02480 0.87 +0.3
614,712 - CA265_RS02480 0.89 +0.8
614,737 - CA265_RS02480 0.90 +0.3
614,740 + -0.7
614,790 - +1.1
614,793 + -0.7
614,794 - -0.4
614,794 - -0.5
614,817 - -0.5
614,858 + -0.9
614,929 - -0.3
614,931 - -0.0
614,934 + -0.7
614,949 + -0.9
614,965 + -1.0
614,968 - -0.2
614,973 + +0.5
614,990 + +0.6
614,991 - +0.9
614,991 - -0.6
615,014 - -0.2
615,040 + -0.5
615,043 - -0.2
615,097 - -0.6
615,130 - +0.8
615,164 - -0.1
615,164 - -1.5
615,274 - -0.3
615,294 - -0.8
615,371 + -1.5
615,371 + +0.1
615,372 - +0.6
615,455 - -0.3
615,507 + -1.0
615,507 + -0.4
615,751 - CA265_RS02485 0.15 -0.4
615,757 - CA265_RS02485 0.15 +1.0
615,874 - CA265_RS02485 0.18 +0.0
615,875 + CA265_RS02485 0.18 +1.4
615,876 - CA265_RS02485 0.18 +0.7
615,887 + CA265_RS02485 0.18 +0.4
615,888 - CA265_RS02485 0.18 +0.5
615,904 - CA265_RS02485 0.19 +0.6
615,904 - CA265_RS02485 0.19 +0.1

Or see this region's nucleotide sequence