Experiment: R2A with Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS02455 and CA265_RS02460 are separated by 228 nucleotides CA265_RS02460 and CA265_RS02465 are separated by 96 nucleotides CA265_RS02465 and CA265_RS02470 are separated by 26 nucleotides
CA265_RS02455: CA265_RS02455 - Fe-S oxidoreductase, at 606,384 to 607,679
_RS02455
CA265_RS02460: CA265_RS02460 - tRNA-Phe, at 607,908 to 607,983
_RS02460
CA265_RS02465: CA265_RS02465 - glycosyl hydrolase family 43, at 608,080 to 609,570
_RS02465
CA265_RS02470: CA265_RS02470 - hypothetical protein, at 609,597 to 611,096
_RS02470
Position (kb) 608
609
610 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 607.685 kb on - strand at 607.685 kb on - strand at 607.714 kb on - strand at 607.714 kb on - strand at 607.777 kb on + strand at 607.928 kb on - strand, within CA265_RS02460 at 608.028 kb on - strand at 608.067 kb on + strand at 608.068 kb on - strand at 608.205 kb on + strand at 608.206 kb on - strand at 608.206 kb on - strand at 608.208 kb on + strand at 608.228 kb on + strand at 608.307 kb on - strand, within CA265_RS02465 at 608.409 kb on + strand, within CA265_RS02465 at 608.449 kb on + strand, within CA265_RS02465 at 608.463 kb on + strand, within CA265_RS02465 at 608.464 kb on - strand, within CA265_RS02465 at 608.472 kb on + strand, within CA265_RS02465 at 608.556 kb on + strand, within CA265_RS02465 at 608.615 kb on - strand, within CA265_RS02465 at 608.662 kb on - strand, within CA265_RS02465 at 608.677 kb on + strand, within CA265_RS02465 at 608.678 kb on - strand, within CA265_RS02465 at 608.678 kb on - strand, within CA265_RS02465 at 608.682 kb on - strand, within CA265_RS02465 at 608.726 kb on + strand, within CA265_RS02465 at 608.727 kb on - strand, within CA265_RS02465 at 608.762 kb on - strand, within CA265_RS02465 at 608.765 kb on + strand, within CA265_RS02465 at 608.783 kb on + strand, within CA265_RS02465 at 608.856 kb on - strand, within CA265_RS02465 at 608.890 kb on - strand, within CA265_RS02465 at 608.890 kb on - strand, within CA265_RS02465 at 608.890 kb on - strand, within CA265_RS02465 at 608.912 kb on + strand, within CA265_RS02465 at 608.997 kb on - strand, within CA265_RS02465 at 609.024 kb on + strand, within CA265_RS02465 at 609.024 kb on + strand, within CA265_RS02465 at 609.037 kb on - strand, within CA265_RS02465 at 609.082 kb on + strand, within CA265_RS02465 at 609.128 kb on + strand, within CA265_RS02465 at 609.154 kb on - strand, within CA265_RS02465 at 609.369 kb on - strand, within CA265_RS02465 at 609.375 kb on + strand, within CA265_RS02465 at 609.376 kb on - strand, within CA265_RS02465 at 609.384 kb on + strand, within CA265_RS02465 at 609.419 kb on + strand, within CA265_RS02465 at 609.423 kb on - strand at 609.464 kb on - strand at 609.544 kb on + strand at 609.550 kb on - strand at 609.553 kb on + strand at 609.585 kb on + strand at 609.586 kb on - strand at 609.588 kb on - strand at 609.624 kb on + strand at 609.636 kb on + strand at 609.649 kb on + strand at 609.677 kb on - strand at 609.677 kb on - strand at 609.682 kb on - strand at 609.682 kb on - strand at 609.684 kb on - strand at 609.684 kb on - strand at 609.695 kb on + strand at 609.696 kb on - strand at 609.696 kb on - strand at 609.696 kb on - strand at 609.788 kb on + strand, within CA265_RS02470 at 609.844 kb on + strand, within CA265_RS02470 at 609.856 kb on + strand at 609.856 kb on + strand, within CA265_RS02470 at 609.857 kb on - strand, within CA265_RS02470 at 610.003 kb on - strand, within CA265_RS02470 at 610.012 kb on - strand, within CA265_RS02470 at 610.015 kb on - strand, within CA265_RS02470 at 610.055 kb on + strand, within CA265_RS02470 at 610.056 kb on - strand, within CA265_RS02470 at 610.057 kb on + strand, within CA265_RS02470 at 610.058 kb on - strand, within CA265_RS02470 at 610.076 kb on + strand, within CA265_RS02470 at 610.077 kb on - strand, within CA265_RS02470 at 610.136 kb on + strand, within CA265_RS02470 at 610.138 kb on + strand, within CA265_RS02470 at 610.170 kb on + strand, within CA265_RS02470 at 610.185 kb on - strand, within CA265_RS02470 at 610.206 kb on - strand, within CA265_RS02470 at 610.245 kb on + strand, within CA265_RS02470 at 610.369 kb on + strand, within CA265_RS02470 at 610.373 kb on + strand, within CA265_RS02470 at 610.373 kb on + strand, within CA265_RS02470 at 610.373 kb on + strand, within CA265_RS02470 at 610.374 kb on - strand, within CA265_RS02470 at 610.374 kb on - strand, within CA265_RS02470 at 610.374 kb on - strand, within CA265_RS02470 at 610.463 kb on + strand, within CA265_RS02470 at 610.514 kb on + strand, within CA265_RS02470 at 610.534 kb on + strand, within CA265_RS02470 at 610.545 kb on + strand, within CA265_RS02470 at 610.557 kb on - strand, within CA265_RS02470 at 610.557 kb on - strand, within CA265_RS02470
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.06 mg/ml remove 607,685 - +1.0 607,685 - -0.1 607,714 - -0.4 607,714 - -0.2 607,777 + -0.6 607,928 - CA265_RS02460 0.26 -0.3 608,028 - -0.5 608,067 + -1.7 608,068 - +0.7 608,205 + -0.6 608,206 - +0.7 608,206 - -1.1 608,208 + -0.0 608,228 + -1.3 608,307 - CA265_RS02465 0.15 +0.7 608,409 + CA265_RS02465 0.22 +0.1 608,449 + CA265_RS02465 0.25 +0.3 608,463 + CA265_RS02465 0.26 -0.9 608,464 - CA265_RS02465 0.26 -0.8 608,472 + CA265_RS02465 0.26 -1.1 608,556 + CA265_RS02465 0.32 +0.0 608,615 - CA265_RS02465 0.36 -0.5 608,662 - CA265_RS02465 0.39 -0.2 608,677 + CA265_RS02465 0.40 +0.4 608,678 - CA265_RS02465 0.40 +0.5 608,678 - CA265_RS02465 0.40 +0.7 608,682 - CA265_RS02465 0.40 +0.2 608,726 + CA265_RS02465 0.43 -0.4 608,727 - CA265_RS02465 0.43 +1.5 608,762 - CA265_RS02465 0.46 -0.4 608,765 + CA265_RS02465 0.46 +0.1 608,783 + CA265_RS02465 0.47 -3.1 608,856 - CA265_RS02465 0.52 -0.1 608,890 - CA265_RS02465 0.54 +1.3 608,890 - CA265_RS02465 0.54 -1.0 608,890 - CA265_RS02465 0.54 -0.7 608,912 + CA265_RS02465 0.56 -0.6 608,997 - CA265_RS02465 0.62 -0.7 609,024 + CA265_RS02465 0.63 -0.3 609,024 + CA265_RS02465 0.63 +0.2 609,037 - CA265_RS02465 0.64 +0.2 609,082 + CA265_RS02465 0.67 -0.3 609,128 + CA265_RS02465 0.70 -0.3 609,154 - CA265_RS02465 0.72 +0.5 609,369 - CA265_RS02465 0.86 +0.5 609,375 + CA265_RS02465 0.87 -0.4 609,376 - CA265_RS02465 0.87 +0.7 609,384 + CA265_RS02465 0.87 -0.2 609,419 + CA265_RS02465 0.90 -1.6 609,423 - +0.8 609,464 - +0.8 609,544 + -0.2 609,550 - -0.2 609,553 + +0.0 609,585 + -1.0 609,586 - -1.4 609,588 - -0.9 609,624 + -1.4 609,636 + +0.8 609,649 + +0.5 609,677 - -0.4 609,677 - +0.2 609,682 - +0.7 609,682 - -0.0 609,684 - +3.1 609,684 - -0.2 609,695 + -0.0 609,696 - -0.1 609,696 - +0.1 609,696 - +0.5 609,788 + CA265_RS02470 0.13 +0.5 609,844 + CA265_RS02470 0.16 -0.0 609,856 + +1.5 609,856 + CA265_RS02470 0.17 -1.4 609,857 - CA265_RS02470 0.17 +0.4 610,003 - CA265_RS02470 0.27 -0.4 610,012 - CA265_RS02470 0.28 +1.1 610,015 - CA265_RS02470 0.28 -0.2 610,055 + CA265_RS02470 0.31 -0.4 610,056 - CA265_RS02470 0.31 +0.7 610,057 + CA265_RS02470 0.31 +0.3 610,058 - CA265_RS02470 0.31 -0.0 610,076 + CA265_RS02470 0.32 -0.3 610,077 - CA265_RS02470 0.32 -1.3 610,136 + CA265_RS02470 0.36 +0.4 610,138 + CA265_RS02470 0.36 +0.1 610,170 + CA265_RS02470 0.38 -0.2 610,185 - CA265_RS02470 0.39 +1.1 610,206 - CA265_RS02470 0.41 -0.2 610,245 + CA265_RS02470 0.43 +0.3 610,369 + CA265_RS02470 0.51 +1.6 610,373 + CA265_RS02470 0.52 -0.5 610,373 + CA265_RS02470 0.52 +0.2 610,373 + CA265_RS02470 0.52 +0.6 610,374 - CA265_RS02470 0.52 -0.9 610,374 - CA265_RS02470 0.52 -0.7 610,374 - CA265_RS02470 0.52 -1.0 610,463 + CA265_RS02470 0.58 -0.3 610,514 + CA265_RS02470 0.61 +1.0 610,534 + CA265_RS02470 0.62 -0.7 610,545 + CA265_RS02470 0.63 +0.1 610,557 - CA265_RS02470 0.64 +0.7 610,557 - CA265_RS02470 0.64 +0.2
Or see this region's nucleotide sequence