Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS01925

Experiment: R2A with Vancomycin 0.06 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS01920 and CA265_RS01925 are separated by 229 nucleotidesCA265_RS01925 and CA265_RS01930 are separated by 106 nucleotides CA265_RS01920: CA265_RS01920 - RagB/SusD family nutrient uptake outer membrane protein, at 482,967 to 484,972 _RS01920 CA265_RS01925: CA265_RS01925 - aryl-sulfate sulfohydrolase, at 485,202 to 486,632 _RS01925 CA265_RS01930: CA265_RS01930 - hypothetical protein, at 486,739 to 488,310 _RS01930 Position (kb) 485 486 487Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 484.224 kb on - strand, within CA265_RS01920at 484.234 kb on + strand, within CA265_RS01920at 484.235 kb on - strand, within CA265_RS01920at 484.236 kb on + strand, within CA265_RS01920at 484.260 kb on + strand, within CA265_RS01920at 484.260 kb on + strand, within CA265_RS01920at 484.261 kb on - strand, within CA265_RS01920at 484.262 kb on + strand, within CA265_RS01920at 484.263 kb on - strand, within CA265_RS01920at 484.292 kb on - strand, within CA265_RS01920at 484.317 kb on - strand, within CA265_RS01920at 484.330 kb on - strand, within CA265_RS01920at 484.332 kb on - strand, within CA265_RS01920at 484.366 kb on - strand, within CA265_RS01920at 484.375 kb on - strand, within CA265_RS01920at 484.375 kb on - strand, within CA265_RS01920at 484.376 kb on + strand, within CA265_RS01920at 484.378 kb on + strand, within CA265_RS01920at 484.379 kb on - strand, within CA265_RS01920at 484.428 kb on + strand, within CA265_RS01920at 484.475 kb on + strand, within CA265_RS01920at 484.496 kb on + strand, within CA265_RS01920at 484.560 kb on + strand, within CA265_RS01920at 484.565 kb on + strand, within CA265_RS01920at 484.611 kb on + strand, within CA265_RS01920at 484.680 kb on - strand, within CA265_RS01920at 484.685 kb on - strand, within CA265_RS01920at 484.707 kb on + strand, within CA265_RS01920at 484.778 kb on + strandat 484.847 kb on + strandat 484.847 kb on + strandat 484.848 kb on - strandat 484.848 kb on - strandat 484.986 kb on - strandat 485.052 kb on - strandat 485.077 kb on + strandat 485.077 kb on + strandat 485.078 kb on - strandat 485.080 kb on - strandat 485.099 kb on - strandat 485.112 kb on - strandat 485.112 kb on - strandat 485.168 kb on - strandat 485.179 kb on - strandat 485.240 kb on - strandat 485.333 kb on + strandat 485.408 kb on - strand, within CA265_RS01925at 485.476 kb on - strand, within CA265_RS01925at 485.496 kb on + strand, within CA265_RS01925at 485.503 kb on + strand, within CA265_RS01925at 485.510 kb on + strand, within CA265_RS01925at 485.562 kb on - strand, within CA265_RS01925at 485.616 kb on + strand, within CA265_RS01925at 485.621 kb on + strand, within CA265_RS01925at 485.622 kb on - strand, within CA265_RS01925at 485.622 kb on - strandat 485.757 kb on - strand, within CA265_RS01925at 485.757 kb on - strand, within CA265_RS01925at 485.817 kb on + strand, within CA265_RS01925at 485.913 kb on + strand, within CA265_RS01925at 485.913 kb on + strand, within CA265_RS01925at 485.914 kb on - strand, within CA265_RS01925at 485.928 kb on + strand, within CA265_RS01925at 486.003 kb on - strand, within CA265_RS01925at 486.003 kb on - strand, within CA265_RS01925at 486.052 kb on + strand, within CA265_RS01925at 486.063 kb on - strand, within CA265_RS01925at 486.088 kb on + strand, within CA265_RS01925at 486.089 kb on - strand, within CA265_RS01925at 486.089 kb on - strand, within CA265_RS01925at 486.108 kb on + strand, within CA265_RS01925at 486.140 kb on - strand, within CA265_RS01925at 486.203 kb on + strand, within CA265_RS01925at 486.204 kb on - strand, within CA265_RS01925at 486.204 kb on - strand, within CA265_RS01925at 486.251 kb on + strand, within CA265_RS01925at 486.277 kb on + strand, within CA265_RS01925at 486.277 kb on + strand, within CA265_RS01925at 486.278 kb on - strand, within CA265_RS01925at 486.279 kb on + strand, within CA265_RS01925at 486.279 kb on + strand, within CA265_RS01925at 486.280 kb on - strand, within CA265_RS01925at 486.280 kb on - strand, within CA265_RS01925at 486.329 kb on + strand, within CA265_RS01925at 486.334 kb on + strand, within CA265_RS01925at 486.363 kb on - strand, within CA265_RS01925at 486.454 kb on + strand, within CA265_RS01925at 486.454 kb on + strand, within CA265_RS01925at 486.455 kb on - strand, within CA265_RS01925at 486.456 kb on + strand, within CA265_RS01925at 486.456 kb on + strand, within CA265_RS01925at 486.462 kb on - strand, within CA265_RS01925at 486.526 kb on + strandat 486.630 kb on + strandat 486.651 kb on + strandat 486.690 kb on - strandat 486.695 kb on - strandat 486.725 kb on + strandat 486.725 kb on + strandat 486.725 kb on + strandat 486.726 kb on - strandat 486.730 kb on - strandat 486.774 kb on + strandat 486.774 kb on + strandat 486.774 kb on + strandat 486.798 kb on + strandat 486.798 kb on + strandat 486.798 kb on + strandat 486.799 kb on - strandat 486.799 kb on - strandat 486.811 kb on + strandat 486.829 kb on + strandat 486.850 kb on - strandat 486.900 kb on + strand, within CA265_RS01930at 486.946 kb on - strand, within CA265_RS01930at 487.014 kb on + strand, within CA265_RS01930at 487.015 kb on - strand, within CA265_RS01930at 487.025 kb on + strand, within CA265_RS01930at 487.059 kb on - strand, within CA265_RS01930at 487.067 kb on - strand, within CA265_RS01930at 487.145 kb on - strand, within CA265_RS01930at 487.222 kb on - strand, within CA265_RS01930at 487.251 kb on + strand, within CA265_RS01930at 487.293 kb on - strand, within CA265_RS01930at 487.414 kb on - strand, within CA265_RS01930at 487.414 kb on - strand, within CA265_RS01930at 487.417 kb on + strand, within CA265_RS01930at 487.446 kb on - strand, within CA265_RS01930at 487.632 kb on + strand, within CA265_RS01930

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.06 mg/ml
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484,224 - CA265_RS01920 0.63 +0.3
484,234 + CA265_RS01920 0.63 -2.0
484,235 - CA265_RS01920 0.63 +0.0
484,236 + CA265_RS01920 0.63 -0.7
484,260 + CA265_RS01920 0.64 -0.5
484,260 + CA265_RS01920 0.64 -1.6
484,261 - CA265_RS01920 0.65 -0.6
484,262 + CA265_RS01920 0.65 -0.4
484,263 - CA265_RS01920 0.65 +0.2
484,292 - CA265_RS01920 0.66 -0.9
484,317 - CA265_RS01920 0.67 -1.0
484,330 - CA265_RS01920 0.68 -0.1
484,332 - CA265_RS01920 0.68 +0.6
484,366 - CA265_RS01920 0.70 +1.1
484,375 - CA265_RS01920 0.70 +0.2
484,375 - CA265_RS01920 0.70 +0.0
484,376 + CA265_RS01920 0.70 -0.3
484,378 + CA265_RS01920 0.70 -1.2
484,379 - CA265_RS01920 0.70 +0.0
484,428 + CA265_RS01920 0.73 -1.1
484,475 + CA265_RS01920 0.75 -0.1
484,496 + CA265_RS01920 0.76 +0.4
484,560 + CA265_RS01920 0.79 -1.2
484,565 + CA265_RS01920 0.80 -0.6
484,611 + CA265_RS01920 0.82 -0.2
484,680 - CA265_RS01920 0.85 -0.3
484,685 - CA265_RS01920 0.86 +0.1
484,707 + CA265_RS01920 0.87 -2.4
484,778 + -1.0
484,847 + +0.5
484,847 + +0.4
484,848 - +0.4
484,848 - +0.1
484,986 - +0.6
485,052 - +0.5
485,077 + +0.1
485,077 + -0.1
485,078 - +0.9
485,080 - +0.4
485,099 - -0.1
485,112 - +0.9
485,112 - +0.4
485,168 - -0.9
485,179 - -0.0
485,240 - +0.2
485,333 + +0.2
485,408 - CA265_RS01925 0.14 +1.1
485,476 - CA265_RS01925 0.19 +0.0
485,496 + CA265_RS01925 0.21 -0.2
485,503 + CA265_RS01925 0.21 +0.1
485,510 + CA265_RS01925 0.22 +0.8
485,562 - CA265_RS01925 0.25 -0.1
485,616 + CA265_RS01925 0.29 -0.1
485,621 + CA265_RS01925 0.29 +0.7
485,622 - CA265_RS01925 0.29 +4.5
485,622 - +1.5
485,757 - CA265_RS01925 0.39 +0.2
485,757 - CA265_RS01925 0.39 -0.8
485,817 + CA265_RS01925 0.43 +0.5
485,913 + CA265_RS01925 0.50 -0.2
485,913 + CA265_RS01925 0.50 +0.4
485,914 - CA265_RS01925 0.50 +0.2
485,928 + CA265_RS01925 0.51 +0.2
486,003 - CA265_RS01925 0.56 +0.3
486,003 - CA265_RS01925 0.56 -1.1
486,052 + CA265_RS01925 0.59 -0.2
486,063 - CA265_RS01925 0.60 -0.6
486,088 + CA265_RS01925 0.62 -2.2
486,089 - CA265_RS01925 0.62 +1.9
486,089 - CA265_RS01925 0.62 +0.9
486,108 + CA265_RS01925 0.63 +0.8
486,140 - CA265_RS01925 0.66 +0.5
486,203 + CA265_RS01925 0.70 -2.0
486,204 - CA265_RS01925 0.70 +0.1
486,204 - CA265_RS01925 0.70 -0.5
486,251 + CA265_RS01925 0.73 +2.3
486,277 + CA265_RS01925 0.75 +0.5
486,277 + CA265_RS01925 0.75 +0.5
486,278 - CA265_RS01925 0.75 +0.4
486,279 + CA265_RS01925 0.75 +0.9
486,279 + CA265_RS01925 0.75 +0.3
486,280 - CA265_RS01925 0.75 +0.4
486,280 - CA265_RS01925 0.75 -0.1
486,329 + CA265_RS01925 0.79 -0.4
486,334 + CA265_RS01925 0.79 +0.9
486,363 - CA265_RS01925 0.81 +0.2
486,454 + CA265_RS01925 0.87 +1.2
486,454 + CA265_RS01925 0.87 +0.1
486,455 - CA265_RS01925 0.88 +0.7
486,456 + CA265_RS01925 0.88 +0.3
486,456 + CA265_RS01925 0.88 +0.3
486,462 - CA265_RS01925 0.88 -1.2
486,526 + +0.6
486,630 + +0.7
486,651 + -0.5
486,690 - +0.9
486,695 - +0.3
486,725 + -0.5
486,725 + +0.2
486,725 + -1.8
486,726 - +0.4
486,730 - +0.7
486,774 + -0.1
486,774 + +1.0
486,774 + +0.1
486,798 + -0.1
486,798 + -0.7
486,798 + +0.4
486,799 - +0.3
486,799 - +0.5
486,811 + +1.3
486,829 + +0.6
486,850 - +0.0
486,900 + CA265_RS01930 0.10 -1.4
486,946 - CA265_RS01930 0.13 +0.1
487,014 + CA265_RS01930 0.17 +0.5
487,015 - CA265_RS01930 0.18 -0.6
487,025 + CA265_RS01930 0.18 +2.0
487,059 - CA265_RS01930 0.20 -0.1
487,067 - CA265_RS01930 0.21 +0.0
487,145 - CA265_RS01930 0.26 +0.3
487,222 - CA265_RS01930 0.31 +0.1
487,251 + CA265_RS01930 0.33 +1.3
487,293 - CA265_RS01930 0.35 +0.8
487,414 - CA265_RS01930 0.43 +1.2
487,414 - CA265_RS01930 0.43 +1.2
487,417 + CA265_RS01930 0.43 +0.6
487,446 - CA265_RS01930 0.45 -0.3
487,632 + CA265_RS01930 0.57 +0.1

Or see this region's nucleotide sequence