Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS01905

Experiment: R2A with Vancomycin 0.06 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS01900 and CA265_RS01905 are separated by 814 nucleotidesCA265_RS01905 and CA265_RS01910 are separated by 47 nucleotides CA265_RS01900: CA265_RS01900 - hypothetical protein, at 472,826 to 473,029 _RS01900 CA265_RS01905: CA265_RS01905 - hypothetical protein, at 473,844 to 476,279 _RS01905 CA265_RS01910: CA265_RS01910 - hypothetical protein, at 476,327 to 479,257 _RS01910 Position (kb) 473 474 475 476 477Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 472.863 kb on - strand, within CA265_RS01900at 472.876 kb on - strand, within CA265_RS01900at 472.975 kb on - strand, within CA265_RS01900at 472.978 kb on + strand, within CA265_RS01900at 472.991 kb on - strand, within CA265_RS01900at 472.996 kb on + strand, within CA265_RS01900at 473.087 kb on - strandat 473.117 kb on - strandat 473.160 kb on - strandat 473.214 kb on + strandat 473.214 kb on + strandat 473.214 kb on + strandat 473.216 kb on + strandat 473.261 kb on - strandat 473.261 kb on - strandat 473.264 kb on - strandat 473.270 kb on + strandat 473.270 kb on + strandat 473.299 kb on - strandat 473.489 kb on - strandat 473.639 kb on - strandat 473.693 kb on + strandat 473.693 kb on + strandat 473.693 kb on + strandat 473.693 kb on + strandat 473.694 kb on - strandat 473.698 kb on + strandat 473.699 kb on - strandat 473.730 kb on - strandat 473.837 kb on + strandat 473.986 kb on + strandat 473.987 kb on - strandat 473.988 kb on + strandat 474.029 kb on + strandat 474.030 kb on - strandat 474.030 kb on - strandat 474.030 kb on - strandat 474.168 kb on + strand, within CA265_RS01905at 474.181 kb on - strand, within CA265_RS01905at 474.301 kb on + strand, within CA265_RS01905at 474.306 kb on + strand, within CA265_RS01905at 474.309 kb on - strand, within CA265_RS01905at 474.343 kb on + strand, within CA265_RS01905at 474.344 kb on - strand, within CA265_RS01905at 474.410 kb on - strand, within CA265_RS01905at 474.413 kb on - strand, within CA265_RS01905at 474.428 kb on - strand, within CA265_RS01905at 474.448 kb on + strand, within CA265_RS01905at 474.492 kb on - strand, within CA265_RS01905at 474.492 kb on - strand, within CA265_RS01905at 474.498 kb on - strand, within CA265_RS01905at 474.556 kb on + strand, within CA265_RS01905at 474.557 kb on - strand, within CA265_RS01905at 474.600 kb on - strand, within CA265_RS01905at 474.600 kb on - strand, within CA265_RS01905at 474.600 kb on - strand, within CA265_RS01905at 474.600 kb on - strand, within CA265_RS01905at 474.710 kb on + strand, within CA265_RS01905at 474.776 kb on + strand, within CA265_RS01905at 474.857 kb on + strand, within CA265_RS01905at 474.860 kb on + strand, within CA265_RS01905at 474.927 kb on + strand, within CA265_RS01905at 474.936 kb on + strand, within CA265_RS01905at 475.029 kb on + strand, within CA265_RS01905at 475.030 kb on - strand, within CA265_RS01905at 475.032 kb on - strand, within CA265_RS01905at 475.048 kb on + strand, within CA265_RS01905at 475.048 kb on + strand, within CA265_RS01905at 475.048 kb on + strand, within CA265_RS01905at 475.059 kb on + strand, within CA265_RS01905at 475.107 kb on - strand, within CA265_RS01905at 475.113 kb on + strand, within CA265_RS01905at 475.210 kb on + strand, within CA265_RS01905at 475.210 kb on + strand, within CA265_RS01905at 475.211 kb on - strand, within CA265_RS01905at 475.211 kb on - strand, within CA265_RS01905at 475.292 kb on - strand, within CA265_RS01905at 475.302 kb on + strand, within CA265_RS01905at 475.376 kb on + strand, within CA265_RS01905at 475.496 kb on + strand, within CA265_RS01905at 475.546 kb on + strand, within CA265_RS01905at 475.547 kb on - strand, within CA265_RS01905at 475.581 kb on - strand, within CA265_RS01905at 475.581 kb on - strand, within CA265_RS01905at 475.581 kb on - strandat 475.583 kb on - strand, within CA265_RS01905at 475.644 kb on + strand, within CA265_RS01905at 475.645 kb on - strand, within CA265_RS01905at 475.685 kb on - strand, within CA265_RS01905at 475.721 kb on - strand, within CA265_RS01905at 475.865 kb on - strand, within CA265_RS01905at 475.865 kb on - strand, within CA265_RS01905at 475.876 kb on + strand, within CA265_RS01905at 475.905 kb on + strand, within CA265_RS01905at 475.910 kb on + strand, within CA265_RS01905at 476.009 kb on + strand, within CA265_RS01905at 476.009 kb on + strand, within CA265_RS01905at 476.012 kb on + strand, within CA265_RS01905at 476.190 kb on - strandat 476.226 kb on - strandat 476.267 kb on + strandat 476.287 kb on + strandat 476.288 kb on - strandat 476.288 kb on - strandat 476.342 kb on - strandat 476.356 kb on + strandat 476.490 kb on + strandat 476.569 kb on + strandat 476.623 kb on + strand, within CA265_RS01910at 476.623 kb on + strand, within CA265_RS01910at 476.624 kb on - strand, within CA265_RS01910at 476.665 kb on + strand, within CA265_RS01910at 476.698 kb on + strand, within CA265_RS01910at 476.772 kb on + strand, within CA265_RS01910at 476.827 kb on + strand, within CA265_RS01910at 476.827 kb on + strand, within CA265_RS01910at 476.827 kb on + strand, within CA265_RS01910at 476.828 kb on - strand, within CA265_RS01910at 476.828 kb on - strand, within CA265_RS01910at 476.850 kb on + strand, within CA265_RS01910at 476.933 kb on - strand, within CA265_RS01910at 476.935 kb on + strand, within CA265_RS01910at 476.935 kb on + strand, within CA265_RS01910at 476.936 kb on - strand, within CA265_RS01910at 476.948 kb on - strand, within CA265_RS01910at 476.973 kb on + strand, within CA265_RS01910at 477.026 kb on - strand, within CA265_RS01910at 477.055 kb on + strand, within CA265_RS01910at 477.077 kb on - strand, within CA265_RS01910at 477.077 kb on - strand, within CA265_RS01910at 477.089 kb on - strand, within CA265_RS01910at 477.123 kb on + strandat 477.124 kb on - strand, within CA265_RS01910at 477.176 kb on - strand, within CA265_RS01910at 477.187 kb on + strand, within CA265_RS01910at 477.187 kb on + strand, within CA265_RS01910at 477.188 kb on - strand, within CA265_RS01910at 477.188 kb on - strand, within CA265_RS01910at 477.206 kb on + strand, within CA265_RS01910at 477.208 kb on + strand, within CA265_RS01910at 477.209 kb on - strand, within CA265_RS01910at 477.209 kb on - strand, within CA265_RS01910at 477.213 kb on + strand, within CA265_RS01910at 477.213 kb on + strand, within CA265_RS01910at 477.214 kb on - strand, within CA265_RS01910at 477.248 kb on - strand, within CA265_RS01910

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.06 mg/ml
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472,863 - CA265_RS01900 0.18 -0.4
472,876 - CA265_RS01900 0.25 -0.8
472,975 - CA265_RS01900 0.73 +0.4
472,978 + CA265_RS01900 0.75 -1.9
472,991 - CA265_RS01900 0.81 +0.6
472,996 + CA265_RS01900 0.83 +0.0
473,087 - -0.1
473,117 - -0.5
473,160 - -0.5
473,214 + +4.4
473,214 + +5.3
473,214 + +4.8
473,216 + +5.1
473,261 - -1.1
473,261 - -0.2
473,264 - +0.4
473,270 + +4.0
473,270 + +2.5
473,299 - -0.1
473,489 - +0.3
473,639 - +0.1
473,693 + +5.1
473,693 + +4.9
473,693 + +4.6
473,693 + +4.1
473,694 - -1.2
473,698 + +5.1
473,699 - +0.4
473,730 - +1.4
473,837 + +2.1
473,986 + +3.3
473,987 - -1.1
473,988 + +1.5
474,029 + +1.7
474,030 - -0.5
474,030 - -1.4
474,030 - +1.4
474,168 + CA265_RS01905 0.13 +1.5
474,181 - CA265_RS01905 0.14 -0.6
474,301 + CA265_RS01905 0.19 +3.1
474,306 + CA265_RS01905 0.19 +2.3
474,309 - CA265_RS01905 0.19 -1.9
474,343 + CA265_RS01905 0.20 +2.6
474,344 - CA265_RS01905 0.21 +0.9
474,410 - CA265_RS01905 0.23 +0.3
474,413 - CA265_RS01905 0.23 +0.0
474,428 - CA265_RS01905 0.24 +0.1
474,448 + CA265_RS01905 0.25 +0.5
474,492 - CA265_RS01905 0.27 -0.2
474,492 - CA265_RS01905 0.27 +1.1
474,498 - CA265_RS01905 0.27 +0.1
474,556 + CA265_RS01905 0.29 +3.7
474,557 - CA265_RS01905 0.29 +0.6
474,600 - CA265_RS01905 0.31 +0.2
474,600 - CA265_RS01905 0.31 +0.2
474,600 - CA265_RS01905 0.31 -0.4
474,600 - CA265_RS01905 0.31 +0.2
474,710 + CA265_RS01905 0.36 +2.7
474,776 + CA265_RS01905 0.38 +0.8
474,857 + CA265_RS01905 0.42 +4.0
474,860 + CA265_RS01905 0.42 +4.2
474,927 + CA265_RS01905 0.44 +5.4
474,936 + CA265_RS01905 0.45 +4.8
475,029 + CA265_RS01905 0.49 +4.8
475,030 - CA265_RS01905 0.49 -0.2
475,032 - CA265_RS01905 0.49 -0.1
475,048 + CA265_RS01905 0.49 +4.6
475,048 + CA265_RS01905 0.49 +4.8
475,048 + CA265_RS01905 0.49 +4.5
475,059 + CA265_RS01905 0.50 +3.3
475,107 - CA265_RS01905 0.52 -0.3
475,113 + CA265_RS01905 0.52 +3.9
475,210 + CA265_RS01905 0.56 +4.6
475,210 + CA265_RS01905 0.56 +5.2
475,211 - CA265_RS01905 0.56 +0.6
475,211 - CA265_RS01905 0.56 +0.6
475,292 - CA265_RS01905 0.59 +0.7
475,302 + CA265_RS01905 0.60 +5.0
475,376 + CA265_RS01905 0.63 +4.1
475,496 + CA265_RS01905 0.68 +4.5
475,546 + CA265_RS01905 0.70 +5.3
475,547 - CA265_RS01905 0.70 +0.4
475,581 - CA265_RS01905 0.71 -1.0
475,581 - CA265_RS01905 0.71 -0.1
475,581 - +2.1
475,583 - CA265_RS01905 0.71 +0.5
475,644 + CA265_RS01905 0.74 +5.2
475,645 - CA265_RS01905 0.74 +0.0
475,685 - CA265_RS01905 0.76 +1.2
475,721 - CA265_RS01905 0.77 +1.1
475,865 - CA265_RS01905 0.83 +0.5
475,865 - CA265_RS01905 0.83 +0.4
475,876 + CA265_RS01905 0.83 +3.2
475,905 + CA265_RS01905 0.85 +5.9
475,910 + CA265_RS01905 0.85 +5.2
476,009 + CA265_RS01905 0.89 +4.7
476,009 + CA265_RS01905 0.89 +4.9
476,012 + CA265_RS01905 0.89 +5.1
476,190 - +0.3
476,226 - -0.9
476,267 + +4.5
476,287 + +4.5
476,288 - +0.1
476,288 - +0.3
476,342 - +1.5
476,356 + +2.3
476,490 + +2.1
476,569 + +2.4
476,623 + CA265_RS01910 0.10 +1.2
476,623 + CA265_RS01910 0.10 +1.9
476,624 - CA265_RS01910 0.10 -0.5
476,665 + CA265_RS01910 0.12 +1.3
476,698 + CA265_RS01910 0.13 +2.6
476,772 + CA265_RS01910 0.15 +2.9
476,827 + CA265_RS01910 0.17 +2.9
476,827 + CA265_RS01910 0.17 +2.2
476,827 + CA265_RS01910 0.17 +2.5
476,828 - CA265_RS01910 0.17 -0.4
476,828 - CA265_RS01910 0.17 +0.1
476,850 + CA265_RS01910 0.18 +2.5
476,933 - CA265_RS01910 0.21 -0.4
476,935 + CA265_RS01910 0.21 +2.8
476,935 + CA265_RS01910 0.21 +3.1
476,936 - CA265_RS01910 0.21 -1.5
476,948 - CA265_RS01910 0.21 +0.7
476,973 + CA265_RS01910 0.22 +3.0
477,026 - CA265_RS01910 0.24 +0.2
477,055 + CA265_RS01910 0.25 -0.2
477,077 - CA265_RS01910 0.26 +0.2
477,077 - CA265_RS01910 0.26 -0.2
477,089 - CA265_RS01910 0.26 -0.0
477,123 + +4.4
477,124 - CA265_RS01910 0.27 +0.2
477,176 - CA265_RS01910 0.29 -0.7
477,187 + CA265_RS01910 0.29 +3.1
477,187 + CA265_RS01910 0.29 +2.7
477,188 - CA265_RS01910 0.29 -0.7
477,188 - CA265_RS01910 0.29 +1.1
477,206 + CA265_RS01910 0.30 +1.4
477,208 + CA265_RS01910 0.30 +3.1
477,209 - CA265_RS01910 0.30 +2.8
477,209 - CA265_RS01910 0.30 +0.2
477,213 + CA265_RS01910 0.30 +2.7
477,213 + CA265_RS01910 0.30 +2.6
477,214 - CA265_RS01910 0.30 -1.2
477,248 - CA265_RS01910 0.31 +0.8

Or see this region's nucleotide sequence