Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS01815

Experiment: R2A with Vancomycin 0.06 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS01810 and CA265_RS01815 are separated by 165 nucleotidesCA265_RS01815 and CA265_RS01820 are separated by 152 nucleotides CA265_RS01810: CA265_RS01810 - asparagine synthase (glutamine-hydrolyzing), at 451,911 to 453,698 _RS01810 CA265_RS01815: CA265_RS01815 - antitermination protein NusG, at 453,864 to 454,367 _RS01815 CA265_RS01820: CA265_RS01820 - hypothetical protein, at 454,520 to 456,925 _RS01820 Position (kb) 453 454 455Strain fitness (log2 ratio) -2 -1 0 1 2 3at 452.867 kb on + strand, within CA265_RS01810at 452.879 kb on + strand, within CA265_RS01810at 452.913 kb on + strand, within CA265_RS01810at 452.913 kb on + strand, within CA265_RS01810at 452.921 kb on + strand, within CA265_RS01810at 452.922 kb on - strand, within CA265_RS01810at 453.007 kb on + strand, within CA265_RS01810at 453.008 kb on - strand, within CA265_RS01810at 453.008 kb on - strand, within CA265_RS01810at 453.032 kb on - strand, within CA265_RS01810at 453.032 kb on - strand, within CA265_RS01810at 453.032 kb on - strand, within CA265_RS01810at 453.042 kb on - strand, within CA265_RS01810at 453.117 kb on - strand, within CA265_RS01810at 453.117 kb on - strand, within CA265_RS01810at 453.117 kb on - strand, within CA265_RS01810at 453.118 kb on + strand, within CA265_RS01810at 453.182 kb on + strand, within CA265_RS01810at 453.183 kb on - strand, within CA265_RS01810at 453.194 kb on + strand, within CA265_RS01810at 453.247 kb on + strand, within CA265_RS01810at 453.247 kb on + strand, within CA265_RS01810at 453.248 kb on - strand, within CA265_RS01810at 453.248 kb on - strand, within CA265_RS01810at 453.302 kb on + strand, within CA265_RS01810at 453.326 kb on + strand, within CA265_RS01810at 453.373 kb on + strand, within CA265_RS01810at 453.373 kb on + strand, within CA265_RS01810at 453.411 kb on - strand, within CA265_RS01810at 453.417 kb on + strand, within CA265_RS01810at 453.418 kb on - strand, within CA265_RS01810at 453.449 kb on - strand, within CA265_RS01810at 453.449 kb on - strand, within CA265_RS01810at 453.454 kb on + strand, within CA265_RS01810at 453.469 kb on + strand, within CA265_RS01810at 453.469 kb on + strand, within CA265_RS01810at 453.525 kb on - strandat 453.583 kb on + strandat 453.583 kb on + strandat 453.583 kb on + strandat 453.584 kb on - strandat 453.617 kb on + strandat 453.672 kb on - strandat 453.674 kb on + strandat 453.675 kb on - strandat 453.687 kb on + strandat 453.688 kb on - strandat 453.784 kb on + strandat 453.798 kb on + strandat 453.799 kb on - strandat 453.799 kb on - strandat 453.799 kb on - strandat 453.802 kb on + strandat 453.817 kb on + strandat 453.894 kb on - strandat 453.899 kb on + strandat 453.899 kb on + strandat 453.924 kb on + strand, within CA265_RS01815at 453.938 kb on + strand, within CA265_RS01815at 453.951 kb on - strand, within CA265_RS01815at 453.954 kb on + strand, within CA265_RS01815at 453.955 kb on - strand, within CA265_RS01815at 453.955 kb on - strand, within CA265_RS01815at 453.976 kb on - strand, within CA265_RS01815at 453.976 kb on - strand, within CA265_RS01815at 453.976 kb on - strand, within CA265_RS01815at 453.984 kb on - strand, within CA265_RS01815at 454.022 kb on + strand, within CA265_RS01815at 454.022 kb on + strand, within CA265_RS01815at 454.022 kb on + strand, within CA265_RS01815at 454.023 kb on - strand, within CA265_RS01815at 454.123 kb on + strand, within CA265_RS01815at 454.127 kb on + strand, within CA265_RS01815at 454.165 kb on + strand, within CA265_RS01815at 454.182 kb on - strand, within CA265_RS01815at 454.247 kb on + strand, within CA265_RS01815at 454.259 kb on + strand, within CA265_RS01815at 454.362 kb on + strandat 454.373 kb on - strandat 454.377 kb on + strandat 454.377 kb on + strandat 454.377 kb on + strandat 454.377 kb on + strandat 454.378 kb on - strandat 454.379 kb on + strandat 454.389 kb on + strandat 454.390 kb on - strandat 454.390 kb on - strandat 454.430 kb on + strandat 454.471 kb on + strandat 454.564 kb on - strandat 454.564 kb on - strandat 454.622 kb on - strandat 454.629 kb on + strandat 454.641 kb on + strandat 454.784 kb on - strand, within CA265_RS01820at 454.784 kb on - strand, within CA265_RS01820at 454.784 kb on - strand, within CA265_RS01820at 454.820 kb on + strand, within CA265_RS01820at 454.821 kb on - strand, within CA265_RS01820at 454.849 kb on + strand, within CA265_RS01820at 454.850 kb on - strand, within CA265_RS01820at 454.850 kb on - strand, within CA265_RS01820at 454.851 kb on + strand, within CA265_RS01820at 454.852 kb on - strand, within CA265_RS01820at 454.852 kb on - strand, within CA265_RS01820at 454.852 kb on - strand, within CA265_RS01820at 454.948 kb on - strand, within CA265_RS01820at 454.957 kb on + strand, within CA265_RS01820at 454.957 kb on + strand, within CA265_RS01820at 454.958 kb on - strand, within CA265_RS01820at 454.958 kb on - strand, within CA265_RS01820at 455.010 kb on + strand, within CA265_RS01820at 455.107 kb on + strand, within CA265_RS01820at 455.108 kb on - strand, within CA265_RS01820at 455.174 kb on - strand, within CA265_RS01820at 455.181 kb on - strand, within CA265_RS01820at 455.186 kb on - strand, within CA265_RS01820at 455.249 kb on + strand, within CA265_RS01820at 455.252 kb on - strand, within CA265_RS01820

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.06 mg/ml
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452,867 + CA265_RS01810 0.53 -0.9
452,879 + CA265_RS01810 0.54 -0.9
452,913 + CA265_RS01810 0.56 -1.2
452,913 + CA265_RS01810 0.56 -1.5
452,921 + CA265_RS01810 0.56 -0.7
452,922 - CA265_RS01810 0.57 -0.2
453,007 + CA265_RS01810 0.61 -1.0
453,008 - CA265_RS01810 0.61 -0.2
453,008 - CA265_RS01810 0.61 -0.6
453,032 - CA265_RS01810 0.63 +2.1
453,032 - CA265_RS01810 0.63 +0.1
453,032 - CA265_RS01810 0.63 -0.1
453,042 - CA265_RS01810 0.63 +0.3
453,117 - CA265_RS01810 0.67 +0.6
453,117 - CA265_RS01810 0.67 +0.2
453,117 - CA265_RS01810 0.67 +0.8
453,118 + CA265_RS01810 0.68 -0.4
453,182 + CA265_RS01810 0.71 -1.7
453,183 - CA265_RS01810 0.71 +0.7
453,194 + CA265_RS01810 0.72 -0.7
453,247 + CA265_RS01810 0.75 +0.1
453,247 + CA265_RS01810 0.75 -0.5
453,248 - CA265_RS01810 0.75 -0.8
453,248 - CA265_RS01810 0.75 +0.8
453,302 + CA265_RS01810 0.78 +0.9
453,326 + CA265_RS01810 0.79 -0.2
453,373 + CA265_RS01810 0.82 -1.9
453,373 + CA265_RS01810 0.82 -0.0
453,411 - CA265_RS01810 0.84 -1.6
453,417 + CA265_RS01810 0.84 +0.5
453,418 - CA265_RS01810 0.84 -0.8
453,449 - CA265_RS01810 0.86 -2.0
453,449 - CA265_RS01810 0.86 -0.5
453,454 + CA265_RS01810 0.86 -2.2
453,469 + CA265_RS01810 0.87 +0.3
453,469 + CA265_RS01810 0.87 -0.5
453,525 - -1.5
453,583 + -0.1
453,583 + -0.1
453,583 + -1.2
453,584 - +0.5
453,617 + -0.8
453,672 - -0.7
453,674 + -1.8
453,675 - -1.9
453,687 + -1.4
453,688 - +0.1
453,784 + -0.8
453,798 + -1.2
453,799 - +0.0
453,799 - +0.1
453,799 - +2.5
453,802 + -0.3
453,817 + -1.0
453,894 - -0.5
453,899 + -0.1
453,899 + -0.9
453,924 + CA265_RS01815 0.12 +0.1
453,938 + CA265_RS01815 0.15 -2.1
453,951 - CA265_RS01815 0.17 -1.3
453,954 + CA265_RS01815 0.18 -0.6
453,955 - CA265_RS01815 0.18 -0.5
453,955 - CA265_RS01815 0.18 -0.7
453,976 - CA265_RS01815 0.22 -1.8
453,976 - CA265_RS01815 0.22 -1.2
453,976 - CA265_RS01815 0.22 +0.2
453,984 - CA265_RS01815 0.24 -1.6
454,022 + CA265_RS01815 0.31 -1.2
454,022 + CA265_RS01815 0.31 -1.7
454,022 + CA265_RS01815 0.31 -1.4
454,023 - CA265_RS01815 0.32 -1.0
454,123 + CA265_RS01815 0.51 -0.4
454,127 + CA265_RS01815 0.52 -0.7
454,165 + CA265_RS01815 0.60 -2.0
454,182 - CA265_RS01815 0.63 -0.0
454,247 + CA265_RS01815 0.76 -0.8
454,259 + CA265_RS01815 0.78 -2.3
454,362 + -0.6
454,373 - +0.5
454,377 + -1.6
454,377 + -1.3
454,377 + -2.5
454,377 + -0.8
454,378 - +0.2
454,379 + -1.2
454,389 + -0.3
454,390 - +1.0
454,390 - +0.2
454,430 + -0.4
454,471 + -0.5
454,564 - -0.2
454,564 - -0.4
454,622 - +1.6
454,629 + -0.2
454,641 + -1.3
454,784 - CA265_RS01820 0.11 +0.3
454,784 - CA265_RS01820 0.11 -1.5
454,784 - CA265_RS01820 0.11 +0.7
454,820 + CA265_RS01820 0.12 -1.1
454,821 - CA265_RS01820 0.13 +0.9
454,849 + CA265_RS01820 0.14 -1.2
454,850 - CA265_RS01820 0.14 +0.8
454,850 - CA265_RS01820 0.14 +1.0
454,851 + CA265_RS01820 0.14 -1.4
454,852 - CA265_RS01820 0.14 +0.3
454,852 - CA265_RS01820 0.14 +0.4
454,852 - CA265_RS01820 0.14 +3.3
454,948 - CA265_RS01820 0.18 +0.3
454,957 + CA265_RS01820 0.18 -0.3
454,957 + CA265_RS01820 0.18 -0.8
454,958 - CA265_RS01820 0.18 +0.7
454,958 - CA265_RS01820 0.18 +0.1
455,010 + CA265_RS01820 0.20 -0.6
455,107 + CA265_RS01820 0.24 -1.2
455,108 - CA265_RS01820 0.24 +0.7
455,174 - CA265_RS01820 0.27 +0.6
455,181 - CA265_RS01820 0.27 -0.6
455,186 - CA265_RS01820 0.28 +0.8
455,249 + CA265_RS01820 0.30 -1.6
455,252 - CA265_RS01820 0.30 +0.4

Or see this region's nucleotide sequence