Experiment: R2A with Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS01695 and CA265_RS01700 are separated by 38 nucleotides CA265_RS01700 and CA265_RS01705 are separated by 124 nucleotides CA265_RS01705 and CA265_RS01710 are separated by 2 nucleotides
CA265_RS01695: CA265_RS01695 - hypothetical protein, at 432,670 to 433,539
_RS01695
CA265_RS01700: CA265_RS01700 - hypothetical protein, at 433,578 to 434,411
_RS01700
CA265_RS01705: CA265_RS01705 - hypothetical protein, at 434,536 to 435,519
_RS01705
CA265_RS01710: CA265_RS01710 - hypothetical protein, at 435,522 to 436,532
_RS01710
Position (kb) 434
435
436 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 433.611 kb on + strand at 433.616 kb on + strand at 433.641 kb on + strand at 433.641 kb on + strand at 433.642 kb on - strand at 433.681 kb on + strand, within CA265_RS01700 at 433.682 kb on - strand, within CA265_RS01700 at 433.732 kb on + strand, within CA265_RS01700 at 433.764 kb on - strand, within CA265_RS01700 at 433.785 kb on - strand, within CA265_RS01700 at 433.809 kb on + strand, within CA265_RS01700 at 433.816 kb on - strand, within CA265_RS01700 at 433.860 kb on + strand, within CA265_RS01700 at 433.891 kb on + strand, within CA265_RS01700 at 433.920 kb on - strand, within CA265_RS01700 at 433.946 kb on + strand, within CA265_RS01700 at 433.946 kb on + strand, within CA265_RS01700 at 433.946 kb on + strand, within CA265_RS01700 at 434.098 kb on - strand, within CA265_RS01700 at 434.102 kb on + strand, within CA265_RS01700 at 434.118 kb on + strand at 434.118 kb on + strand, within CA265_RS01700 at 434.169 kb on + strand, within CA265_RS01700 at 434.169 kb on + strand, within CA265_RS01700 at 434.197 kb on - strand, within CA265_RS01700 at 434.238 kb on + strand, within CA265_RS01700 at 434.241 kb on + strand, within CA265_RS01700 at 434.243 kb on + strand, within CA265_RS01700 at 434.243 kb on + strand, within CA265_RS01700 at 434.244 kb on - strand, within CA265_RS01700 at 434.244 kb on - strand, within CA265_RS01700 at 434.252 kb on + strand, within CA265_RS01700 at 434.260 kb on - strand, within CA265_RS01700 at 434.273 kb on + strand, within CA265_RS01700 at 434.315 kb on + strand, within CA265_RS01700 at 434.353 kb on - strand at 434.353 kb on - strand at 434.383 kb on - strand at 434.413 kb on + strand at 434.431 kb on + strand at 434.446 kb on - strand at 434.500 kb on - strand at 434.558 kb on + strand at 434.602 kb on + strand at 434.631 kb on - strand at 434.656 kb on - strand, within CA265_RS01705 at 434.656 kb on - strand, within CA265_RS01705 at 434.697 kb on + strand, within CA265_RS01705 at 434.697 kb on + strand at 434.698 kb on - strand, within CA265_RS01705 at 434.798 kb on - strand, within CA265_RS01705 at 434.798 kb on - strand, within CA265_RS01705 at 434.814 kb on + strand, within CA265_RS01705 at 434.842 kb on - strand, within CA265_RS01705 at 434.845 kb on + strand, within CA265_RS01705 at 434.845 kb on + strand, within CA265_RS01705 at 434.846 kb on - strand, within CA265_RS01705 at 434.948 kb on + strand, within CA265_RS01705 at 434.949 kb on - strand, within CA265_RS01705 at 434.949 kb on - strand, within CA265_RS01705 at 434.979 kb on + strand, within CA265_RS01705 at 435.013 kb on + strand, within CA265_RS01705 at 435.033 kb on - strand, within CA265_RS01705 at 435.033 kb on - strand, within CA265_RS01705 at 435.043 kb on + strand, within CA265_RS01705 at 435.043 kb on + strand, within CA265_RS01705 at 435.251 kb on - strand, within CA265_RS01705 at 435.264 kb on - strand, within CA265_RS01705 at 435.400 kb on + strand, within CA265_RS01705 at 435.444 kb on + strand at 435.458 kb on - strand at 435.459 kb on + strand at 435.464 kb on - strand at 435.476 kb on + strand at 435.476 kb on + strand at 435.611 kb on - strand at 435.619 kb on + strand at 435.756 kb on - strand, within CA265_RS01710 at 435.779 kb on + strand, within CA265_RS01710 at 435.796 kb on - strand, within CA265_RS01710 at 435.812 kb on + strand, within CA265_RS01710 at 435.888 kb on - strand, within CA265_RS01710 at 435.907 kb on - strand, within CA265_RS01710 at 436.049 kb on + strand, within CA265_RS01710 at 436.065 kb on - strand, within CA265_RS01710 at 436.135 kb on + strand, within CA265_RS01710 at 436.198 kb on - strand, within CA265_RS01710 at 436.239 kb on + strand, within CA265_RS01710 at 436.239 kb on + strand, within CA265_RS01710 at 436.264 kb on + strand, within CA265_RS01710 at 436.310 kb on - strand at 436.367 kb on - strand, within CA265_RS01710 at 436.367 kb on - strand, within CA265_RS01710 at 436.370 kb on + strand, within CA265_RS01710 at 436.380 kb on - strand, within CA265_RS01710 at 436.513 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.06 mg/ml remove 433,611 + -0.6 433,616 + +0.1 433,641 + -1.7 433,641 + -0.4 433,642 - +0.7 433,681 + CA265_RS01700 0.12 -1.9 433,682 - CA265_RS01700 0.12 -0.4 433,732 + CA265_RS01700 0.18 -2.0 433,764 - CA265_RS01700 0.22 +0.5 433,785 - CA265_RS01700 0.25 +0.9 433,809 + CA265_RS01700 0.28 -0.8 433,816 - CA265_RS01700 0.29 +0.1 433,860 + CA265_RS01700 0.34 -1.6 433,891 + CA265_RS01700 0.38 -0.9 433,920 - CA265_RS01700 0.41 -0.4 433,946 + CA265_RS01700 0.44 -0.4 433,946 + CA265_RS01700 0.44 -1.7 433,946 + CA265_RS01700 0.44 -0.5 434,098 - CA265_RS01700 0.62 +0.4 434,102 + CA265_RS01700 0.63 -1.0 434,118 + -0.3 434,118 + CA265_RS01700 0.65 -0.8 434,169 + CA265_RS01700 0.71 -0.8 434,169 + CA265_RS01700 0.71 +1.2 434,197 - CA265_RS01700 0.74 -0.7 434,238 + CA265_RS01700 0.79 -0.5 434,241 + CA265_RS01700 0.79 -1.4 434,243 + CA265_RS01700 0.80 -1.2 434,243 + CA265_RS01700 0.80 -0.7 434,244 - CA265_RS01700 0.80 +0.5 434,244 - CA265_RS01700 0.80 +0.2 434,252 + CA265_RS01700 0.81 -1.2 434,260 - CA265_RS01700 0.82 +0.1 434,273 + CA265_RS01700 0.83 -1.0 434,315 + CA265_RS01700 0.88 -0.3 434,353 - -0.5 434,353 - +0.6 434,383 - +0.5 434,413 + -0.3 434,431 + -0.9 434,446 - -0.5 434,500 - -0.6 434,558 + -1.4 434,602 + +0.3 434,631 - -0.5 434,656 - CA265_RS01705 0.12 -0.4 434,656 - CA265_RS01705 0.12 -0.2 434,697 + CA265_RS01705 0.16 -0.4 434,697 + +1.1 434,698 - CA265_RS01705 0.16 +0.9 434,798 - CA265_RS01705 0.27 -0.8 434,798 - CA265_RS01705 0.27 -1.6 434,814 + CA265_RS01705 0.28 -2.2 434,842 - CA265_RS01705 0.31 -1.7 434,845 + CA265_RS01705 0.31 -0.7 434,845 + CA265_RS01705 0.31 -0.9 434,846 - CA265_RS01705 0.32 -1.3 434,948 + CA265_RS01705 0.42 +1.6 434,949 - CA265_RS01705 0.42 +0.5 434,949 - CA265_RS01705 0.42 +0.7 434,979 + CA265_RS01705 0.45 -1.8 435,013 + CA265_RS01705 0.48 -0.6 435,033 - CA265_RS01705 0.51 -0.8 435,033 - CA265_RS01705 0.51 -0.6 435,043 + CA265_RS01705 0.52 -0.8 435,043 + CA265_RS01705 0.52 -1.7 435,251 - CA265_RS01705 0.73 -0.4 435,264 - CA265_RS01705 0.74 -0.9 435,400 + CA265_RS01705 0.88 -2.4 435,444 + -0.8 435,458 - -2.2 435,459 + -1.6 435,464 - -0.4 435,476 + -0.6 435,476 + -1.3 435,611 - -2.1 435,619 + -0.6 435,756 - CA265_RS01710 0.23 -0.9 435,779 + CA265_RS01710 0.25 -0.8 435,796 - CA265_RS01710 0.27 +0.2 435,812 + CA265_RS01710 0.29 -3.0 435,888 - CA265_RS01710 0.36 -0.8 435,907 - CA265_RS01710 0.38 -0.7 436,049 + CA265_RS01710 0.52 -0.2 436,065 - CA265_RS01710 0.54 -1.7 436,135 + CA265_RS01710 0.61 +0.3 436,198 - CA265_RS01710 0.67 -0.7 436,239 + CA265_RS01710 0.71 -1.6 436,239 + CA265_RS01710 0.71 -0.2 436,264 + CA265_RS01710 0.73 -0.3 436,310 - +2.1 436,367 - CA265_RS01710 0.84 -2.0 436,367 - CA265_RS01710 0.84 -1.9 436,370 + CA265_RS01710 0.84 -0.4 436,380 - CA265_RS01710 0.85 -1.6 436,513 - -0.3
Or see this region's nucleotide sequence