Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS01660

Experiment: R2A with Vancomycin 0.06 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS01655 and CA265_RS01660 overlap by 1 nucleotidesCA265_RS01660 and CA265_RS01665 are separated by 127 nucleotides CA265_RS01655: CA265_RS01655 - hypothetical protein, at 425,328 to 426,461 _RS01655 CA265_RS01660: CA265_RS01660 - hypothetical protein, at 426,461 to 427,315 _RS01660 CA265_RS01665: CA265_RS01665 - hypothetical protein, at 427,443 to 428,492 _RS01665 Position (kb) 426 427 428Strain fitness (log2 ratio) -2 -1 0 1at 425.484 kb on - strand, within CA265_RS01655at 425.527 kb on + strand, within CA265_RS01655at 425.528 kb on - strand, within CA265_RS01655at 425.563 kb on - strand, within CA265_RS01655at 425.577 kb on - strand, within CA265_RS01655at 425.586 kb on + strand, within CA265_RS01655at 425.690 kb on - strand, within CA265_RS01655at 425.690 kb on - strand, within CA265_RS01655at 425.871 kb on - strand, within CA265_RS01655at 425.877 kb on - strand, within CA265_RS01655at 425.892 kb on + strand, within CA265_RS01655at 425.904 kb on + strand, within CA265_RS01655at 425.967 kb on - strand, within CA265_RS01655at 425.967 kb on - strand, within CA265_RS01655at 425.995 kb on + strand, within CA265_RS01655at 425.998 kb on - strand, within CA265_RS01655at 426.008 kb on + strand, within CA265_RS01655at 426.071 kb on + strand, within CA265_RS01655at 426.141 kb on - strand, within CA265_RS01655at 426.195 kb on - strand, within CA265_RS01655at 426.195 kb on - strand, within CA265_RS01655at 426.327 kb on - strand, within CA265_RS01655at 426.368 kb on + strandat 426.441 kb on - strandat 426.456 kb on + strandat 426.462 kb on + strandat 426.462 kb on + strandat 426.492 kb on + strandat 426.644 kb on - strand, within CA265_RS01660at 426.644 kb on - strand, within CA265_RS01660at 426.699 kb on + strand, within CA265_RS01660at 426.700 kb on - strand, within CA265_RS01660at 426.700 kb on - strand, within CA265_RS01660at 426.733 kb on - strand, within CA265_RS01660at 426.749 kb on - strand, within CA265_RS01660at 426.817 kb on + strand, within CA265_RS01660at 426.817 kb on + strand, within CA265_RS01660at 426.818 kb on - strand, within CA265_RS01660at 426.855 kb on + strand, within CA265_RS01660at 427.151 kb on - strand, within CA265_RS01660at 427.211 kb on + strand, within CA265_RS01660at 427.212 kb on - strand, within CA265_RS01660at 427.229 kb on + strand, within CA265_RS01660at 427.235 kb on + strandat 427.239 kb on - strandat 427.263 kb on + strandat 427.263 kb on + strandat 427.263 kb on + strandat 427.267 kb on + strandat 427.267 kb on + strandat 427.267 kb on + strandat 427.268 kb on - strandat 427.268 kb on - strandat 427.295 kb on + strandat 427.370 kb on - strandat 427.376 kb on - strandat 427.380 kb on - strandat 427.393 kb on - strandat 427.447 kb on + strandat 427.546 kb on - strandat 427.636 kb on + strand, within CA265_RS01665at 427.641 kb on - strand, within CA265_RS01665at 427.641 kb on - strand, within CA265_RS01665at 427.641 kb on - strand, within CA265_RS01665at 427.670 kb on + strand, within CA265_RS01665at 427.670 kb on + strand, within CA265_RS01665at 427.673 kb on - strand, within CA265_RS01665at 427.675 kb on - strand, within CA265_RS01665at 427.686 kb on + strand, within CA265_RS01665at 427.687 kb on - strand, within CA265_RS01665at 427.776 kb on - strand, within CA265_RS01665at 427.822 kb on - strand, within CA265_RS01665at 427.826 kb on - strand, within CA265_RS01665at 427.836 kb on - strand, within CA265_RS01665at 427.885 kb on + strand, within CA265_RS01665at 427.960 kb on - strand, within CA265_RS01665at 427.962 kb on + strand, within CA265_RS01665at 427.979 kb on + strand, within CA265_RS01665at 427.986 kb on - strand, within CA265_RS01665at 427.986 kb on - strand, within CA265_RS01665at 428.012 kb on + strand, within CA265_RS01665at 428.018 kb on - strand, within CA265_RS01665at 428.021 kb on - strand, within CA265_RS01665at 428.038 kb on - strand, within CA265_RS01665at 428.101 kb on - strand, within CA265_RS01665at 428.114 kb on + strand, within CA265_RS01665at 428.115 kb on - strand, within CA265_RS01665at 428.157 kb on + strand, within CA265_RS01665at 428.162 kb on + strand, within CA265_RS01665at 428.178 kb on + strand, within CA265_RS01665at 428.242 kb on + strand, within CA265_RS01665at 428.242 kb on + strand, within CA265_RS01665at 428.263 kb on + strand, within CA265_RS01665at 428.268 kb on + strand, within CA265_RS01665at 428.312 kb on - strand, within CA265_RS01665

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.06 mg/ml
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425,484 - CA265_RS01655 0.14 -2.0
425,527 + CA265_RS01655 0.18 +0.1
425,528 - CA265_RS01655 0.18 -0.2
425,563 - CA265_RS01655 0.21 -2.6
425,577 - CA265_RS01655 0.22 -1.4
425,586 + CA265_RS01655 0.23 -1.7
425,690 - CA265_RS01655 0.32 -1.7
425,690 - CA265_RS01655 0.32 +1.1
425,871 - CA265_RS01655 0.48 -1.1
425,877 - CA265_RS01655 0.48 -0.9
425,892 + CA265_RS01655 0.50 -0.5
425,904 + CA265_RS01655 0.51 -1.3
425,967 - CA265_RS01655 0.56 -1.3
425,967 - CA265_RS01655 0.56 -1.7
425,995 + CA265_RS01655 0.59 +0.2
425,998 - CA265_RS01655 0.59 +0.6
426,008 + CA265_RS01655 0.60 -0.6
426,071 + CA265_RS01655 0.66 -0.4
426,141 - CA265_RS01655 0.72 -1.0
426,195 - CA265_RS01655 0.76 +1.1
426,195 - CA265_RS01655 0.76 -1.9
426,327 - CA265_RS01655 0.88 -0.0
426,368 + -1.3
426,441 - -1.3
426,456 + -0.2
426,462 + -0.9
426,462 + +0.9
426,492 + -0.8
426,644 - CA265_RS01660 0.21 -1.6
426,644 - CA265_RS01660 0.21 -1.8
426,699 + CA265_RS01660 0.28 -0.5
426,700 - CA265_RS01660 0.28 -0.5
426,700 - CA265_RS01660 0.28 -1.4
426,733 - CA265_RS01660 0.32 -1.4
426,749 - CA265_RS01660 0.34 -1.4
426,817 + CA265_RS01660 0.42 -1.4
426,817 + CA265_RS01660 0.42 -2.1
426,818 - CA265_RS01660 0.42 -0.1
426,855 + CA265_RS01660 0.46 -1.5
427,151 - CA265_RS01660 0.81 -0.8
427,211 + CA265_RS01660 0.88 -0.9
427,212 - CA265_RS01660 0.88 -0.7
427,229 + CA265_RS01660 0.90 -0.5
427,235 + -0.5
427,239 - +0.4
427,263 + -2.6
427,263 + -0.4
427,263 + +0.4
427,267 + -1.1
427,267 + -0.8
427,267 + -0.7
427,268 - -0.1
427,268 - -0.5
427,295 + -1.4
427,370 - -1.0
427,376 - -1.2
427,380 - -1.1
427,393 - -0.9
427,447 + +0.8
427,546 - -0.3
427,636 + CA265_RS01665 0.18 -0.9
427,641 - CA265_RS01665 0.19 +0.6
427,641 - CA265_RS01665 0.19 +0.3
427,641 - CA265_RS01665 0.19 +0.2
427,670 + CA265_RS01665 0.22 -0.3
427,670 + CA265_RS01665 0.22 -0.1
427,673 - CA265_RS01665 0.22 -0.3
427,675 - CA265_RS01665 0.22 +0.5
427,686 + CA265_RS01665 0.23 +0.3
427,687 - CA265_RS01665 0.23 +0.0
427,776 - CA265_RS01665 0.32 +0.7
427,822 - CA265_RS01665 0.36 -0.4
427,826 - CA265_RS01665 0.36 +0.4
427,836 - CA265_RS01665 0.37 -0.0
427,885 + CA265_RS01665 0.42 -1.2
427,960 - CA265_RS01665 0.49 +0.8
427,962 + CA265_RS01665 0.49 -0.7
427,979 + CA265_RS01665 0.51 +0.1
427,986 - CA265_RS01665 0.52 -0.6
427,986 - CA265_RS01665 0.52 -0.2
428,012 + CA265_RS01665 0.54 -0.9
428,018 - CA265_RS01665 0.55 +0.9
428,021 - CA265_RS01665 0.55 -0.6
428,038 - CA265_RS01665 0.57 +0.7
428,101 - CA265_RS01665 0.63 +0.0
428,114 + CA265_RS01665 0.64 -1.2
428,115 - CA265_RS01665 0.64 -0.6
428,157 + CA265_RS01665 0.68 +0.9
428,162 + CA265_RS01665 0.68 +0.0
428,178 + CA265_RS01665 0.70 +0.8
428,242 + CA265_RS01665 0.76 -0.5
428,242 + CA265_RS01665 0.76 -0.9
428,263 + CA265_RS01665 0.78 +0.1
428,268 + CA265_RS01665 0.79 +0.7
428,312 - CA265_RS01665 0.83 -0.8

Or see this region's nucleotide sequence