Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS01470

Experiment: R2A with Vancomycin 0.06 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS01460 and CA265_RS01465 are separated by 338 nucleotidesCA265_RS01465 and CA265_RS01470 are separated by 262 nucleotidesCA265_RS01470 and CA265_RS01475 are separated by 172 nucleotidesCA265_RS01475 and CA265_RS01480 are separated by 69 nucleotides CA265_RS01460: CA265_RS01460 - hypothetical protein, at 372,473 to 372,841 _RS01460 CA265_RS01465: CA265_RS01465 - hypothetical protein, at 373,180 to 373,386 _RS01465 CA265_RS01470: CA265_RS01470 - tRNA-Ser, at 373,649 to 373,736 _RS01470 CA265_RS01475: CA265_RS01475 - DoxX family protein, at 373,909 to 374,355 _RS01475 CA265_RS01480: CA265_RS01480 - two-component system response regulator, at 374,425 to 375,249 _RS01480 Position (kb) 373 374Strain fitness (log2 ratio) -2 -1 0 1 2 3at 372.651 kb on - strand, within CA265_RS01460at 372.679 kb on + strand, within CA265_RS01460at 372.734 kb on + strand, within CA265_RS01460at 372.735 kb on - strand, within CA265_RS01460at 372.735 kb on - strand, within CA265_RS01460at 372.742 kb on - strand, within CA265_RS01460at 372.742 kb on - strand, within CA265_RS01460at 372.742 kb on - strand, within CA265_RS01460at 372.742 kb on - strand, within CA265_RS01460at 372.779 kb on - strand, within CA265_RS01460at 372.881 kb on - strandat 372.916 kb on - strandat 372.941 kb on + strandat 372.942 kb on - strandat 372.943 kb on + strandat 372.965 kb on + strandat 372.966 kb on - strandat 372.969 kb on - strandat 372.985 kb on - strandat 373.026 kb on - strandat 373.027 kb on + strandat 373.127 kb on - strandat 373.130 kb on + strandat 373.206 kb on + strand, within CA265_RS01465at 373.224 kb on + strand, within CA265_RS01465at 373.225 kb on - strand, within CA265_RS01465at 373.225 kb on - strand, within CA265_RS01465at 373.244 kb on + strand, within CA265_RS01465at 373.246 kb on + strand, within CA265_RS01465at 373.248 kb on + strand, within CA265_RS01465at 373.248 kb on + strand, within CA265_RS01465at 373.322 kb on - strand, within CA265_RS01465at 373.322 kb on - strand, within CA265_RS01465at 373.336 kb on - strand, within CA265_RS01465at 373.420 kb on + strandat 373.421 kb on - strandat 373.440 kb on + strandat 373.445 kb on + strandat 373.445 kb on + strandat 373.446 kb on - strandat 373.530 kb on + strandat 373.531 kb on - strandat 373.531 kb on - strandat 373.588 kb on - strandat 373.588 kb on - strandat 373.597 kb on + strandat 373.623 kb on - strandat 373.623 kb on - strandat 373.623 kb on - strandat 373.623 kb on - strandat 373.805 kb on - strandat 373.868 kb on + strandat 373.946 kb on - strandat 373.993 kb on + strand, within CA265_RS01475at 373.997 kb on - strand, within CA265_RS01475at 374.050 kb on - strand, within CA265_RS01475at 374.089 kb on - strand, within CA265_RS01475at 374.101 kb on + strand, within CA265_RS01475at 374.124 kb on + strand, within CA265_RS01475at 374.125 kb on - strand, within CA265_RS01475at 374.131 kb on + strand, within CA265_RS01475at 374.145 kb on + strand, within CA265_RS01475at 374.145 kb on + strand, within CA265_RS01475at 374.146 kb on - strand, within CA265_RS01475at 374.149 kb on + strand, within CA265_RS01475at 374.150 kb on - strand, within CA265_RS01475at 374.150 kb on - strand, within CA265_RS01475at 374.157 kb on + strand, within CA265_RS01475at 374.179 kb on + strand, within CA265_RS01475at 374.224 kb on - strand, within CA265_RS01475at 374.272 kb on - strand, within CA265_RS01475at 374.279 kb on - strand, within CA265_RS01475at 374.281 kb on + strand, within CA265_RS01475at 374.281 kb on + strand, within CA265_RS01475at 374.282 kb on - strand, within CA265_RS01475at 374.289 kb on + strand, within CA265_RS01475at 374.412 kb on + strandat 374.412 kb on + strandat 374.412 kb on + strandat 374.531 kb on - strand, within CA265_RS01480at 374.637 kb on + strand, within CA265_RS01480at 374.638 kb on - strand, within CA265_RS01480at 374.656 kb on + strand, within CA265_RS01480at 374.657 kb on - strand, within CA265_RS01480at 374.698 kb on + strand, within CA265_RS01480at 374.699 kb on - strand, within CA265_RS01480

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.06 mg/ml
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372,651 - CA265_RS01460 0.48 -0.3
372,679 + CA265_RS01460 0.56 +0.1
372,734 + CA265_RS01460 0.71 +1.0
372,735 - CA265_RS01460 0.71 -0.4
372,735 - CA265_RS01460 0.71 +0.3
372,742 - CA265_RS01460 0.73 -1.0
372,742 - CA265_RS01460 0.73 -0.8
372,742 - CA265_RS01460 0.73 -0.0
372,742 - CA265_RS01460 0.73 -0.8
372,779 - CA265_RS01460 0.83 +0.5
372,881 - -1.1
372,916 - -0.2
372,941 + +0.3
372,942 - +0.1
372,943 + +0.1
372,965 + +0.1
372,966 - -0.5
372,969 - -0.6
372,985 - -0.1
373,026 - +0.5
373,027 + +0.9
373,127 - -0.1
373,130 + +1.5
373,206 + CA265_RS01465 0.13 +0.6
373,224 + CA265_RS01465 0.21 +0.3
373,225 - CA265_RS01465 0.22 -0.9
373,225 - CA265_RS01465 0.22 -0.0
373,244 + CA265_RS01465 0.31 +0.4
373,246 + CA265_RS01465 0.32 +0.3
373,248 + CA265_RS01465 0.33 +0.6
373,248 + CA265_RS01465 0.33 +0.5
373,322 - CA265_RS01465 0.69 -0.7
373,322 - CA265_RS01465 0.69 -1.6
373,336 - CA265_RS01465 0.75 +1.2
373,420 + +1.3
373,421 - +0.4
373,440 + -1.4
373,445 + +0.2
373,445 + -0.4
373,446 - -0.6
373,530 + +0.9
373,531 - +0.1
373,531 - -0.0
373,588 - +0.6
373,588 - +1.6
373,597 + +1.3
373,623 - -1.0
373,623 - -0.7
373,623 - +1.1
373,623 - -0.2
373,805 - +0.9
373,868 + -0.0
373,946 - +0.9
373,993 + CA265_RS01475 0.19 +0.7
373,997 - CA265_RS01475 0.20 +0.7
374,050 - CA265_RS01475 0.32 +0.6
374,089 - CA265_RS01475 0.40 +1.2
374,101 + CA265_RS01475 0.43 -0.8
374,124 + CA265_RS01475 0.48 -0.2
374,125 - CA265_RS01475 0.48 +0.7
374,131 + CA265_RS01475 0.50 +0.4
374,145 + CA265_RS01475 0.53 +0.2
374,145 + CA265_RS01475 0.53 +2.6
374,146 - CA265_RS01475 0.53 +0.7
374,149 + CA265_RS01475 0.54 -0.1
374,150 - CA265_RS01475 0.54 +0.3
374,150 - CA265_RS01475 0.54 +0.7
374,157 + CA265_RS01475 0.55 -2.0
374,179 + CA265_RS01475 0.60 -0.5
374,224 - CA265_RS01475 0.70 +1.9
374,272 - CA265_RS01475 0.81 +0.3
374,279 - CA265_RS01475 0.83 +1.8
374,281 + CA265_RS01475 0.83 +0.6
374,281 + CA265_RS01475 0.83 +0.1
374,282 - CA265_RS01475 0.83 +1.1
374,289 + CA265_RS01475 0.85 +1.5
374,412 + -0.5
374,412 + +0.6
374,412 + +0.2
374,531 - CA265_RS01480 0.13 +0.2
374,637 + CA265_RS01480 0.26 +0.8
374,638 - CA265_RS01480 0.26 +0.0
374,656 + CA265_RS01480 0.28 +0.5
374,657 - CA265_RS01480 0.28 +0.2
374,698 + CA265_RS01480 0.33 +2.8
374,699 - CA265_RS01480 0.33 +0.1

Or see this region's nucleotide sequence