Experiment: R2A with Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS01030 and CA265_RS01035 are separated by 40 nucleotides CA265_RS01035 and CA265_RS01040 are separated by 88 nucleotides
CA265_RS01030: CA265_RS01030 - ABC transporter substrate-binding protein, at 261,516 to 263,150
_RS01030
CA265_RS01035: CA265_RS01035 - hypothetical protein, at 263,191 to 263,649
_RS01035
CA265_RS01040: CA265_RS01040 - sigma-54-dependent Fis family transcriptional regulator, at 263,738 to 265,075
_RS01040
Position (kb) 263
264 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 262.239 kb on - strand, within CA265_RS01030 at 262.249 kb on - strand, within CA265_RS01030 at 262.259 kb on - strand, within CA265_RS01030 at 262.367 kb on + strand, within CA265_RS01030 at 262.367 kb on + strand, within CA265_RS01030 at 262.368 kb on - strand, within CA265_RS01030 at 262.588 kb on + strand, within CA265_RS01030 at 262.589 kb on - strand, within CA265_RS01030 at 262.597 kb on - strand, within CA265_RS01030 at 262.625 kb on - strand, within CA265_RS01030 at 262.639 kb on - strand, within CA265_RS01030 at 262.703 kb on + strand, within CA265_RS01030 at 262.758 kb on + strand, within CA265_RS01030 at 262.790 kb on - strand, within CA265_RS01030 at 262.791 kb on + strand, within CA265_RS01030 at 262.791 kb on + strand, within CA265_RS01030 at 262.856 kb on - strand, within CA265_RS01030 at 262.883 kb on - strand, within CA265_RS01030 at 262.923 kb on - strand, within CA265_RS01030 at 262.956 kb on + strand, within CA265_RS01030 at 263.048 kb on + strand at 263.049 kb on - strand at 263.091 kb on - strand at 263.104 kb on - strand at 263.104 kb on - strand at 263.131 kb on + strand at 263.286 kb on + strand, within CA265_RS01035 at 263.319 kb on - strand, within CA265_RS01035 at 263.322 kb on + strand, within CA265_RS01035 at 263.406 kb on - strand, within CA265_RS01035 at 263.406 kb on - strand, within CA265_RS01035 at 263.406 kb on - strand, within CA265_RS01035 at 263.410 kb on - strand, within CA265_RS01035 at 263.412 kb on + strand, within CA265_RS01035 at 263.574 kb on + strand, within CA265_RS01035 at 263.647 kb on + strand at 263.757 kb on + strand at 263.775 kb on + strand at 263.882 kb on - strand, within CA265_RS01040 at 263.882 kb on - strand, within CA265_RS01040 at 263.940 kb on - strand, within CA265_RS01040 at 264.032 kb on + strand, within CA265_RS01040 at 264.059 kb on - strand, within CA265_RS01040 at 264.069 kb on - strand, within CA265_RS01040 at 264.097 kb on - strand, within CA265_RS01040 at 264.175 kb on - strand, within CA265_RS01040 at 264.216 kb on - strand, within CA265_RS01040 at 264.284 kb on - strand, within CA265_RS01040 at 264.404 kb on - strand, within CA265_RS01040 at 264.520 kb on - strand, within CA265_RS01040 at 264.526 kb on + strand, within CA265_RS01040 at 264.526 kb on + strand, within CA265_RS01040 at 264.581 kb on - strand, within CA265_RS01040 at 264.647 kb on - strand, within CA265_RS01040
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.06 mg/ml remove 262,239 - CA265_RS01030 0.44 -1.0 262,249 - CA265_RS01030 0.45 +0.8 262,259 - CA265_RS01030 0.45 +0.6 262,367 + CA265_RS01030 0.52 -0.3 262,367 + CA265_RS01030 0.52 -0.2 262,368 - CA265_RS01030 0.52 -0.5 262,588 + CA265_RS01030 0.66 -0.9 262,589 - CA265_RS01030 0.66 -1.1 262,597 - CA265_RS01030 0.66 +0.2 262,625 - CA265_RS01030 0.68 -0.5 262,639 - CA265_RS01030 0.69 -1.3 262,703 + CA265_RS01030 0.73 -1.0 262,758 + CA265_RS01030 0.76 -1.7 262,790 - CA265_RS01030 0.78 -0.0 262,791 + CA265_RS01030 0.78 -1.6 262,791 + CA265_RS01030 0.78 -2.0 262,856 - CA265_RS01030 0.82 +1.1 262,883 - CA265_RS01030 0.84 -0.8 262,923 - CA265_RS01030 0.86 -0.6 262,956 + CA265_RS01030 0.88 -1.4 263,048 + -0.8 263,049 - -0.3 263,091 - +0.9 263,104 - +0.4 263,104 - -0.1 263,131 + +0.8 263,286 + CA265_RS01035 0.21 -1.0 263,319 - CA265_RS01035 0.28 -1.8 263,322 + CA265_RS01035 0.29 -1.7 263,406 - CA265_RS01035 0.47 -1.4 263,406 - CA265_RS01035 0.47 -1.5 263,406 - CA265_RS01035 0.47 -3.2 263,410 - CA265_RS01035 0.48 -1.2 263,412 + CA265_RS01035 0.48 -3.0 263,574 + CA265_RS01035 0.83 -1.2 263,647 + +1.4 263,757 + +0.9 263,775 + +0.3 263,882 - CA265_RS01040 0.11 -0.4 263,882 - CA265_RS01040 0.11 -1.0 263,940 - CA265_RS01040 0.15 -1.0 264,032 + CA265_RS01040 0.22 -0.5 264,059 - CA265_RS01040 0.24 +0.3 264,069 - CA265_RS01040 0.25 -1.4 264,097 - CA265_RS01040 0.27 -0.2 264,175 - CA265_RS01040 0.33 -0.3 264,216 - CA265_RS01040 0.36 -0.0 264,284 - CA265_RS01040 0.41 -0.2 264,404 - CA265_RS01040 0.50 +0.3 264,520 - CA265_RS01040 0.58 -0.2 264,526 + CA265_RS01040 0.59 -0.1 264,526 + CA265_RS01040 0.59 -0.4 264,581 - CA265_RS01040 0.63 -0.2 264,647 - CA265_RS01040 0.68 -2.1
Or see this region's nucleotide sequence