Experiment: R2A with Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS00920 and CA265_RS00925 are separated by 150 nucleotides CA265_RS00925 and CA265_RS00930 are separated by 88 nucleotides CA265_RS00930 and CA265_RS00935 are separated by 6 nucleotides
CA265_RS00920: CA265_RS00920 - hypothetical protein, at 227,711 to 228,439
_RS00920
CA265_RS00925: CA265_RS00925 - hypothetical protein, at 228,590 to 229,051
_RS00925
CA265_RS00930: CA265_RS00930 - CusA/CzcA family heavy metal efflux RND transporter, at 229,140 to 233,504
_RS00930
CA265_RS00935: CA265_RS00935 - hypothetical protein, at 233,511 to 234,644
_RS00935
Position (kb) 229
230
231
232
233
234 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 228.196 kb on + strand, within CA265_RS00920 at 228.255 kb on + strand, within CA265_RS00920 at 228.272 kb on - strand, within CA265_RS00920 at 228.295 kb on + strand, within CA265_RS00920 at 228.296 kb on - strand, within CA265_RS00920 at 228.301 kb on - strand, within CA265_RS00920 at 228.313 kb on - strand, within CA265_RS00920 at 228.357 kb on - strand, within CA265_RS00920 at 228.370 kb on + strand at 228.380 kb on - strand at 228.430 kb on - strand at 228.432 kb on - strand at 228.451 kb on + strand at 228.455 kb on + strand at 228.493 kb on + strand at 228.551 kb on + strand at 228.578 kb on - strand at 228.659 kb on + strand, within CA265_RS00925 at 228.662 kb on - strand, within CA265_RS00925 at 228.683 kb on - strand, within CA265_RS00925 at 228.736 kb on + strand, within CA265_RS00925 at 228.754 kb on + strand, within CA265_RS00925 at 228.754 kb on + strand, within CA265_RS00925 at 228.824 kb on + strand, within CA265_RS00925 at 228.901 kb on + strand, within CA265_RS00925 at 228.901 kb on + strand, within CA265_RS00925 at 228.902 kb on - strand, within CA265_RS00925 at 228.967 kb on - strand, within CA265_RS00925 at 229.114 kb on - strand at 229.114 kb on - strand at 229.148 kb on + strand at 229.148 kb on + strand at 229.224 kb on + strand at 229.240 kb on + strand at 229.240 kb on + strand at 229.319 kb on + strand at 229.331 kb on - strand at 229.359 kb on - strand at 229.449 kb on + strand at 229.449 kb on + strand at 229.450 kb on - strand at 229.561 kb on - strand at 229.567 kb on - strand at 229.590 kb on + strand, within CA265_RS00930 at 229.591 kb on - strand, within CA265_RS00930 at 229.591 kb on - strand, within CA265_RS00930 at 229.598 kb on + strand, within CA265_RS00930 at 229.599 kb on - strand, within CA265_RS00930 at 229.599 kb on - strand, within CA265_RS00930 at 229.603 kb on - strand, within CA265_RS00930 at 229.603 kb on - strand, within CA265_RS00930 at 229.603 kb on - strand, within CA265_RS00930 at 229.603 kb on - strand, within CA265_RS00930 at 229.622 kb on + strand, within CA265_RS00930 at 229.642 kb on + strand, within CA265_RS00930 at 229.757 kb on + strand, within CA265_RS00930 at 229.812 kb on + strand, within CA265_RS00930 at 229.839 kb on + strand, within CA265_RS00930 at 229.945 kb on + strand, within CA265_RS00930 at 229.946 kb on - strand, within CA265_RS00930 at 229.986 kb on - strand, within CA265_RS00930 at 230.050 kb on + strand, within CA265_RS00930 at 230.069 kb on + strand, within CA265_RS00930 at 230.069 kb on + strand, within CA265_RS00930 at 230.070 kb on - strand, within CA265_RS00930 at 230.113 kb on + strand, within CA265_RS00930 at 230.144 kb on - strand, within CA265_RS00930 at 230.148 kb on - strand, within CA265_RS00930 at 230.198 kb on - strand, within CA265_RS00930 at 230.286 kb on - strand, within CA265_RS00930 at 230.287 kb on + strand, within CA265_RS00930 at 230.320 kb on + strand, within CA265_RS00930 at 230.320 kb on + strand, within CA265_RS00930 at 230.321 kb on - strand, within CA265_RS00930 at 230.336 kb on + strand, within CA265_RS00930 at 230.385 kb on - strand, within CA265_RS00930 at 230.524 kb on + strand, within CA265_RS00930 at 230.524 kb on + strand, within CA265_RS00930 at 230.525 kb on - strand, within CA265_RS00930 at 230.527 kb on - strand, within CA265_RS00930 at 230.577 kb on - strand, within CA265_RS00930 at 230.615 kb on + strand, within CA265_RS00930 at 230.616 kb on - strand, within CA265_RS00930 at 230.628 kb on - strand, within CA265_RS00930 at 230.631 kb on + strand, within CA265_RS00930 at 230.632 kb on - strand, within CA265_RS00930 at 230.632 kb on - strand, within CA265_RS00930 at 230.632 kb on - strand, within CA265_RS00930 at 230.635 kb on + strand, within CA265_RS00930 at 230.669 kb on - strand, within CA265_RS00930 at 230.702 kb on - strand, within CA265_RS00930 at 230.714 kb on - strand, within CA265_RS00930 at 230.714 kb on - strand, within CA265_RS00930 at 230.714 kb on - strand, within CA265_RS00930 at 230.752 kb on - strand, within CA265_RS00930 at 230.810 kb on + strand, within CA265_RS00930 at 230.835 kb on - strand, within CA265_RS00930 at 230.878 kb on + strand, within CA265_RS00930 at 231.009 kb on - strand, within CA265_RS00930 at 231.009 kb on - strand, within CA265_RS00930 at 231.199 kb on + strand, within CA265_RS00930 at 231.200 kb on - strand, within CA265_RS00930 at 231.200 kb on - strand, within CA265_RS00930 at 231.244 kb on - strand, within CA265_RS00930 at 231.290 kb on + strand, within CA265_RS00930 at 231.336 kb on - strand, within CA265_RS00930 at 231.363 kb on + strand, within CA265_RS00930 at 231.364 kb on - strand, within CA265_RS00930 at 231.401 kb on + strand, within CA265_RS00930 at 231.402 kb on - strand, within CA265_RS00930 at 231.402 kb on - strand, within CA265_RS00930 at 231.459 kb on - strand, within CA265_RS00930 at 231.521 kb on - strand, within CA265_RS00930 at 231.550 kb on + strand, within CA265_RS00930 at 231.555 kb on - strand, within CA265_RS00930 at 231.586 kb on + strand, within CA265_RS00930 at 231.710 kb on + strand, within CA265_RS00930 at 231.725 kb on - strand, within CA265_RS00930 at 231.729 kb on + strand, within CA265_RS00930 at 231.729 kb on + strand, within CA265_RS00930 at 231.750 kb on - strand, within CA265_RS00930 at 231.761 kb on + strand, within CA265_RS00930 at 231.800 kb on - strand, within CA265_RS00930 at 231.819 kb on + strand, within CA265_RS00930 at 231.858 kb on + strand, within CA265_RS00930 at 231.858 kb on + strand, within CA265_RS00930 at 231.892 kb on + strand, within CA265_RS00930 at 231.892 kb on + strand, within CA265_RS00930 at 231.893 kb on - strand, within CA265_RS00930 at 231.893 kb on - strand, within CA265_RS00930 at 231.947 kb on + strand, within CA265_RS00930 at 231.992 kb on + strand, within CA265_RS00930 at 232.035 kb on - strand, within CA265_RS00930 at 232.048 kb on + strand, within CA265_RS00930 at 232.049 kb on - strand, within CA265_RS00930 at 232.069 kb on + strand, within CA265_RS00930 at 232.186 kb on + strand, within CA265_RS00930 at 232.230 kb on + strand, within CA265_RS00930 at 232.230 kb on + strand, within CA265_RS00930 at 232.235 kb on - strand, within CA265_RS00930 at 232.237 kb on + strand, within CA265_RS00930 at 232.304 kb on + strand, within CA265_RS00930 at 232.305 kb on - strand, within CA265_RS00930 at 232.358 kb on - strand, within CA265_RS00930 at 232.387 kb on + strand, within CA265_RS00930 at 232.388 kb on - strand, within CA265_RS00930 at 232.388 kb on - strand, within CA265_RS00930 at 232.393 kb on + strand, within CA265_RS00930 at 232.393 kb on + strand, within CA265_RS00930 at 232.414 kb on - strand, within CA265_RS00930 at 232.414 kb on - strand, within CA265_RS00930 at 232.417 kb on - strand, within CA265_RS00930 at 232.452 kb on - strand, within CA265_RS00930 at 232.506 kb on - strand, within CA265_RS00930 at 232.546 kb on - strand, within CA265_RS00930 at 232.564 kb on + strand, within CA265_RS00930 at 232.568 kb on + strand, within CA265_RS00930 at 232.648 kb on - strand, within CA265_RS00930 at 232.660 kb on + strand, within CA265_RS00930 at 232.685 kb on - strand, within CA265_RS00930 at 232.704 kb on + strand, within CA265_RS00930 at 232.817 kb on - strand, within CA265_RS00930 at 232.831 kb on - strand, within CA265_RS00930 at 232.831 kb on - strand, within CA265_RS00930 at 232.831 kb on - strand, within CA265_RS00930 at 232.943 kb on + strand, within CA265_RS00930 at 232.944 kb on - strand, within CA265_RS00930 at 233.022 kb on - strand, within CA265_RS00930 at 233.032 kb on + strand, within CA265_RS00930 at 233.057 kb on + strand, within CA265_RS00930 at 233.078 kb on + strand at 233.098 kb on - strand at 233.105 kb on + strand at 233.134 kb on + strand at 233.134 kb on + strand at 233.242 kb on + strand at 233.340 kb on - strand at 233.433 kb on + strand at 233.436 kb on + strand at 233.502 kb on + strand at 233.502 kb on + strand at 233.507 kb on + strand at 233.507 kb on + strand at 233.508 kb on - strand at 233.615 kb on + strand at 233.660 kb on + strand, within CA265_RS00935 at 233.660 kb on + strand, within CA265_RS00935 at 233.660 kb on + strand, within CA265_RS00935 at 233.661 kb on - strand, within CA265_RS00935 at 233.705 kb on + strand, within CA265_RS00935 at 233.706 kb on - strand, within CA265_RS00935 at 233.752 kb on + strand, within CA265_RS00935 at 233.752 kb on + strand, within CA265_RS00935 at 233.758 kb on + strand, within CA265_RS00935 at 233.758 kb on + strand, within CA265_RS00935 at 233.772 kb on + strand, within CA265_RS00935 at 233.773 kb on - strand, within CA265_RS00935 at 233.773 kb on - strand, within CA265_RS00935 at 233.801 kb on + strand, within CA265_RS00935 at 233.850 kb on + strand, within CA265_RS00935 at 233.871 kb on + strand, within CA265_RS00935 at 233.901 kb on - strand, within CA265_RS00935 at 233.913 kb on + strand, within CA265_RS00935 at 233.913 kb on + strand, within CA265_RS00935 at 233.915 kb on + strand, within CA265_RS00935 at 233.915 kb on + strand, within CA265_RS00935 at 234.001 kb on + strand, within CA265_RS00935 at 234.037 kb on + strand, within CA265_RS00935 at 234.045 kb on - strand, within CA265_RS00935 at 234.140 kb on + strand, within CA265_RS00935 at 234.141 kb on - strand, within CA265_RS00935 at 234.144 kb on + strand, within CA265_RS00935 at 234.144 kb on + strand, within CA265_RS00935 at 234.145 kb on - strand, within CA265_RS00935 at 234.162 kb on - strand, within CA265_RS00935 at 234.206 kb on + strand, within CA265_RS00935 at 234.207 kb on - strand, within CA265_RS00935 at 234.261 kb on - strand, within CA265_RS00935 at 234.339 kb on - strand, within CA265_RS00935 at 234.397 kb on + strand, within CA265_RS00935 at 234.398 kb on - strand, within CA265_RS00935 at 234.431 kb on - strand, within CA265_RS00935 at 234.470 kb on + strand, within CA265_RS00935
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.06 mg/ml remove 228,196 + CA265_RS00920 0.67 +0.9 228,255 + CA265_RS00920 0.75 +0.0 228,272 - CA265_RS00920 0.77 -0.4 228,295 + CA265_RS00920 0.80 -0.3 228,296 - CA265_RS00920 0.80 +0.3 228,301 - CA265_RS00920 0.81 +0.2 228,313 - CA265_RS00920 0.83 +0.4 228,357 - CA265_RS00920 0.89 -2.5 228,370 + +0.4 228,380 - -0.4 228,430 - -0.4 228,432 - -0.1 228,451 + +1.4 228,455 + +0.5 228,493 + -0.4 228,551 + +0.3 228,578 - -1.4 228,659 + CA265_RS00925 0.15 -0.4 228,662 - CA265_RS00925 0.16 +0.4 228,683 - CA265_RS00925 0.20 +0.2 228,736 + CA265_RS00925 0.32 -0.7 228,754 + CA265_RS00925 0.35 +0.4 228,754 + CA265_RS00925 0.35 -1.2 228,824 + CA265_RS00925 0.51 -1.0 228,901 + CA265_RS00925 0.67 -1.2 228,901 + CA265_RS00925 0.67 +0.4 228,902 - CA265_RS00925 0.68 -0.9 228,967 - CA265_RS00925 0.82 -3.3 229,114 - -1.2 229,114 - -0.3 229,148 + +1.1 229,148 + +0.7 229,224 + +0.0 229,240 + -0.1 229,240 + -0.3 229,319 + +1.1 229,331 - -0.0 229,359 - +0.1 229,449 + +0.4 229,449 + +0.9 229,450 - -0.2 229,561 - -0.3 229,567 - -0.4 229,590 + CA265_RS00930 0.10 +0.7 229,591 - CA265_RS00930 0.10 -1.4 229,591 - CA265_RS00930 0.10 +0.5 229,598 + CA265_RS00930 0.10 +1.6 229,599 - CA265_RS00930 0.11 +0.9 229,599 - CA265_RS00930 0.11 -0.4 229,603 - CA265_RS00930 0.11 +0.3 229,603 - CA265_RS00930 0.11 -1.2 229,603 - CA265_RS00930 0.11 -0.0 229,603 - CA265_RS00930 0.11 -0.7 229,622 + CA265_RS00930 0.11 +0.4 229,642 + CA265_RS00930 0.12 -1.1 229,757 + CA265_RS00930 0.14 +0.3 229,812 + CA265_RS00930 0.15 +1.4 229,839 + CA265_RS00930 0.16 -0.1 229,945 + CA265_RS00930 0.18 -0.2 229,946 - CA265_RS00930 0.18 -0.6 229,986 - CA265_RS00930 0.19 +0.2 230,050 + CA265_RS00930 0.21 +0.4 230,069 + CA265_RS00930 0.21 +1.2 230,069 + CA265_RS00930 0.21 +1.4 230,070 - CA265_RS00930 0.21 +0.0 230,113 + CA265_RS00930 0.22 +0.1 230,144 - CA265_RS00930 0.23 -0.6 230,148 - CA265_RS00930 0.23 +0.3 230,198 - CA265_RS00930 0.24 -0.4 230,286 - CA265_RS00930 0.26 -0.6 230,287 + CA265_RS00930 0.26 +0.4 230,320 + CA265_RS00930 0.27 -0.4 230,320 + CA265_RS00930 0.27 -0.6 230,321 - CA265_RS00930 0.27 -0.6 230,336 + CA265_RS00930 0.27 -0.6 230,385 - CA265_RS00930 0.29 -0.1 230,524 + CA265_RS00930 0.32 -0.2 230,524 + CA265_RS00930 0.32 +0.3 230,525 - CA265_RS00930 0.32 -0.2 230,527 - CA265_RS00930 0.32 +0.4 230,577 - CA265_RS00930 0.33 -0.6 230,615 + CA265_RS00930 0.34 -0.9 230,616 - CA265_RS00930 0.34 +1.0 230,628 - CA265_RS00930 0.34 -0.7 230,631 + CA265_RS00930 0.34 +0.3 230,632 - CA265_RS00930 0.34 -0.0 230,632 - CA265_RS00930 0.34 -0.8 230,632 - CA265_RS00930 0.34 -0.4 230,635 + CA265_RS00930 0.34 +0.6 230,669 - CA265_RS00930 0.35 -0.6 230,702 - CA265_RS00930 0.36 +0.7 230,714 - CA265_RS00930 0.36 -0.3 230,714 - CA265_RS00930 0.36 +0.9 230,714 - CA265_RS00930 0.36 +0.2 230,752 - CA265_RS00930 0.37 -0.4 230,810 + CA265_RS00930 0.38 -0.3 230,835 - CA265_RS00930 0.39 -0.7 230,878 + CA265_RS00930 0.40 -0.3 231,009 - CA265_RS00930 0.43 -1.0 231,009 - CA265_RS00930 0.43 +1.2 231,199 + CA265_RS00930 0.47 +0.0 231,200 - CA265_RS00930 0.47 -2.0 231,200 - CA265_RS00930 0.47 +0.8 231,244 - CA265_RS00930 0.48 +0.4 231,290 + CA265_RS00930 0.49 -0.6 231,336 - CA265_RS00930 0.50 +1.0 231,363 + CA265_RS00930 0.51 -0.7 231,364 - CA265_RS00930 0.51 -0.2 231,401 + CA265_RS00930 0.52 -0.0 231,402 - CA265_RS00930 0.52 -1.0 231,402 - CA265_RS00930 0.52 -0.8 231,459 - CA265_RS00930 0.53 -0.5 231,521 - CA265_RS00930 0.55 -0.6 231,550 + CA265_RS00930 0.55 -1.4 231,555 - CA265_RS00930 0.55 -0.6 231,586 + CA265_RS00930 0.56 -0.1 231,710 + CA265_RS00930 0.59 +0.2 231,725 - CA265_RS00930 0.59 +0.3 231,729 + CA265_RS00930 0.59 +0.2 231,729 + CA265_RS00930 0.59 +0.1 231,750 - CA265_RS00930 0.60 -2.8 231,761 + CA265_RS00930 0.60 +0.1 231,800 - CA265_RS00930 0.61 +0.1 231,819 + CA265_RS00930 0.61 +0.1 231,858 + CA265_RS00930 0.62 -2.8 231,858 + CA265_RS00930 0.62 -0.3 231,892 + CA265_RS00930 0.63 -1.1 231,892 + CA265_RS00930 0.63 +0.6 231,893 - CA265_RS00930 0.63 -1.1 231,893 - CA265_RS00930 0.63 +0.6 231,947 + CA265_RS00930 0.64 -0.7 231,992 + CA265_RS00930 0.65 +0.0 232,035 - CA265_RS00930 0.66 +0.4 232,048 + CA265_RS00930 0.67 +0.2 232,049 - CA265_RS00930 0.67 -0.6 232,069 + CA265_RS00930 0.67 -1.0 232,186 + CA265_RS00930 0.70 +2.2 232,230 + CA265_RS00930 0.71 -0.3 232,230 + CA265_RS00930 0.71 -0.1 232,235 - CA265_RS00930 0.71 -2.7 232,237 + CA265_RS00930 0.71 +0.4 232,304 + CA265_RS00930 0.72 +0.2 232,305 - CA265_RS00930 0.73 +0.6 232,358 - CA265_RS00930 0.74 -2.0 232,387 + CA265_RS00930 0.74 -0.2 232,388 - CA265_RS00930 0.74 +0.5 232,388 - CA265_RS00930 0.74 +0.3 232,393 + CA265_RS00930 0.75 +0.7 232,393 + CA265_RS00930 0.75 +0.5 232,414 - CA265_RS00930 0.75 +0.7 232,414 - CA265_RS00930 0.75 -1.3 232,417 - CA265_RS00930 0.75 +0.1 232,452 - CA265_RS00930 0.76 +0.9 232,506 - CA265_RS00930 0.77 +0.4 232,546 - CA265_RS00930 0.78 -0.3 232,564 + CA265_RS00930 0.78 -0.7 232,568 + CA265_RS00930 0.79 +1.8 232,648 - CA265_RS00930 0.80 +0.4 232,660 + CA265_RS00930 0.81 -0.3 232,685 - CA265_RS00930 0.81 +0.1 232,704 + CA265_RS00930 0.82 +0.8 232,817 - CA265_RS00930 0.84 +0.4 232,831 - CA265_RS00930 0.85 +0.2 232,831 - CA265_RS00930 0.85 -0.3 232,831 - CA265_RS00930 0.85 -0.2 232,943 + CA265_RS00930 0.87 -1.8 232,944 - CA265_RS00930 0.87 -0.8 233,022 - CA265_RS00930 0.89 +0.1 233,032 + CA265_RS00930 0.89 -1.4 233,057 + CA265_RS00930 0.90 +0.0 233,078 + -1.8 233,098 - -0.7 233,105 + -0.3 233,134 + +0.3 233,134 + +0.1 233,242 + -0.6 233,340 - -0.2 233,433 + -0.5 233,436 + -1.1 233,502 + +0.1 233,502 + +0.1 233,507 + -0.4 233,507 + -0.5 233,508 - -0.6 233,615 + -0.4 233,660 + CA265_RS00935 0.13 -2.5 233,660 + CA265_RS00935 0.13 +1.9 233,660 + CA265_RS00935 0.13 +0.4 233,661 - CA265_RS00935 0.13 +0.8 233,705 + CA265_RS00935 0.17 +0.8 233,706 - CA265_RS00935 0.17 +0.3 233,752 + CA265_RS00935 0.21 +0.2 233,752 + CA265_RS00935 0.21 +0.9 233,758 + CA265_RS00935 0.22 +0.3 233,758 + CA265_RS00935 0.22 -0.4 233,772 + CA265_RS00935 0.23 -0.4 233,773 - CA265_RS00935 0.23 +0.6 233,773 - CA265_RS00935 0.23 +0.1 233,801 + CA265_RS00935 0.26 -0.4 233,850 + CA265_RS00935 0.30 -1.7 233,871 + CA265_RS00935 0.32 +0.4 233,901 - CA265_RS00935 0.34 -0.9 233,913 + CA265_RS00935 0.35 -0.2 233,913 + CA265_RS00935 0.35 +0.6 233,915 + CA265_RS00935 0.36 -0.4 233,915 + CA265_RS00935 0.36 -1.8 234,001 + CA265_RS00935 0.43 +0.0 234,037 + CA265_RS00935 0.46 -0.1 234,045 - CA265_RS00935 0.47 -0.0 234,140 + CA265_RS00935 0.55 +0.0 234,141 - CA265_RS00935 0.56 +0.4 234,144 + CA265_RS00935 0.56 +0.7 234,144 + CA265_RS00935 0.56 +0.2 234,145 - CA265_RS00935 0.56 -1.4 234,162 - CA265_RS00935 0.57 +0.2 234,206 + CA265_RS00935 0.61 -1.1 234,207 - CA265_RS00935 0.61 +0.6 234,261 - CA265_RS00935 0.66 -1.4 234,339 - CA265_RS00935 0.73 -1.3 234,397 + CA265_RS00935 0.78 +0.5 234,398 - CA265_RS00935 0.78 +0.4 234,431 - CA265_RS00935 0.81 -0.4 234,470 + CA265_RS00935 0.85 +0.7
Or see this region's nucleotide sequence