Experiment: R2A with Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS00710 and CA265_RS00715 are separated by 270 nucleotides CA265_RS00715 and CA265_RS00720 are separated by 86 nucleotides
CA265_RS00710: CA265_RS00710 - hypothetical protein, at 161,248 to 165,369
_RS00710
CA265_RS00715: CA265_RS00715 - hypothetical protein, at 165,640 to 168,699
_RS00715
CA265_RS00720: CA265_RS00720 - hypothetical protein, at 168,786 to 170,468
_RS00720
Position (kb) 165
166
167
168
169 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 164.689 kb on + strand, within CA265_RS00710 at 164.703 kb on + strand, within CA265_RS00710 at 164.717 kb on - strand, within CA265_RS00710 at 164.726 kb on + strand, within CA265_RS00710 at 164.733 kb on + strand, within CA265_RS00710 at 164.737 kb on + strand, within CA265_RS00710 at 164.738 kb on - strand, within CA265_RS00710 at 164.743 kb on + strand, within CA265_RS00710 at 164.848 kb on + strand, within CA265_RS00710 at 164.917 kb on - strand, within CA265_RS00710 at 164.917 kb on - strand, within CA265_RS00710 at 164.920 kb on - strand, within CA265_RS00710 at 164.951 kb on + strand, within CA265_RS00710 at 164.964 kb on + strand at 164.985 kb on + strand at 164.986 kb on - strand at 165.039 kb on + strand at 165.039 kb on + strand at 165.065 kb on - strand at 165.079 kb on - strand at 165.092 kb on + strand at 165.095 kb on + strand at 165.095 kb on + strand at 165.154 kb on - strand at 165.178 kb on - strand at 165.178 kb on - strand at 165.250 kb on - strand at 165.356 kb on - strand at 165.360 kb on + strand at 165.407 kb on + strand at 165.421 kb on - strand at 165.553 kb on + strand at 165.573 kb on + strand at 165.637 kb on + strand at 165.638 kb on - strand at 165.639 kb on + strand at 165.640 kb on - strand at 165.666 kb on - strand at 165.686 kb on + strand at 165.686 kb on + strand at 165.687 kb on - strand at 165.689 kb on - strand at 165.696 kb on - strand at 165.721 kb on - strand at 165.721 kb on - strand at 165.726 kb on - strand at 165.743 kb on + strand at 165.743 kb on + strand at 165.805 kb on - strand at 165.813 kb on + strand at 165.889 kb on - strand at 165.893 kb on + strand at 165.894 kb on - strand at 165.894 kb on - strand at 165.903 kb on - strand at 165.937 kb on + strand at 165.972 kb on - strand, within CA265_RS00715 at 166.014 kb on + strand, within CA265_RS00715 at 166.015 kb on - strand, within CA265_RS00715 at 166.025 kb on + strand, within CA265_RS00715 at 166.025 kb on + strand, within CA265_RS00715 at 166.043 kb on + strand, within CA265_RS00715 at 166.092 kb on + strand, within CA265_RS00715 at 166.092 kb on + strand, within CA265_RS00715 at 166.116 kb on + strand, within CA265_RS00715 at 166.155 kb on - strand, within CA265_RS00715 at 166.155 kb on - strand, within CA265_RS00715 at 166.155 kb on - strand, within CA265_RS00715 at 166.191 kb on + strand, within CA265_RS00715 at 166.195 kb on - strand, within CA265_RS00715 at 166.211 kb on + strand, within CA265_RS00715 at 166.212 kb on - strand, within CA265_RS00715 at 166.247 kb on - strand, within CA265_RS00715 at 166.272 kb on - strand, within CA265_RS00715 at 166.285 kb on - strand, within CA265_RS00715 at 166.290 kb on - strand, within CA265_RS00715 at 166.301 kb on + strand, within CA265_RS00715 at 166.301 kb on + strand, within CA265_RS00715 at 166.332 kb on + strand, within CA265_RS00715 at 166.410 kb on - strand, within CA265_RS00715 at 166.440 kb on - strand, within CA265_RS00715 at 166.458 kb on + strand, within CA265_RS00715 at 166.463 kb on + strand, within CA265_RS00715 at 166.463 kb on + strand, within CA265_RS00715 at 166.464 kb on - strand, within CA265_RS00715 at 166.465 kb on + strand, within CA265_RS00715 at 166.466 kb on - strand, within CA265_RS00715 at 166.566 kb on - strand, within CA265_RS00715 at 166.566 kb on - strand, within CA265_RS00715 at 166.586 kb on + strand, within CA265_RS00715 at 166.614 kb on + strand, within CA265_RS00715 at 166.669 kb on + strand, within CA265_RS00715 at 166.670 kb on - strand, within CA265_RS00715 at 166.687 kb on - strand, within CA265_RS00715 at 166.733 kb on - strand, within CA265_RS00715 at 166.770 kb on + strand, within CA265_RS00715 at 166.787 kb on + strand, within CA265_RS00715 at 166.852 kb on - strand, within CA265_RS00715 at 166.956 kb on + strand, within CA265_RS00715 at 166.957 kb on - strand, within CA265_RS00715 at 167.029 kb on + strand, within CA265_RS00715 at 167.038 kb on - strand, within CA265_RS00715 at 167.088 kb on - strand, within CA265_RS00715 at 167.099 kb on + strand, within CA265_RS00715 at 167.125 kb on - strand, within CA265_RS00715 at 167.201 kb on + strand, within CA265_RS00715 at 167.201 kb on + strand, within CA265_RS00715 at 167.202 kb on - strand, within CA265_RS00715 at 167.202 kb on - strand at 167.310 kb on + strand, within CA265_RS00715 at 167.322 kb on + strand, within CA265_RS00715 at 167.323 kb on - strand, within CA265_RS00715 at 167.339 kb on - strand, within CA265_RS00715 at 167.388 kb on + strand, within CA265_RS00715 at 167.389 kb on - strand, within CA265_RS00715 at 167.389 kb on - strand, within CA265_RS00715 at 167.411 kb on - strand, within CA265_RS00715 at 167.413 kb on - strand, within CA265_RS00715 at 167.471 kb on - strand, within CA265_RS00715 at 167.551 kb on - strand, within CA265_RS00715 at 167.587 kb on + strand, within CA265_RS00715 at 167.595 kb on + strand, within CA265_RS00715 at 167.595 kb on + strand, within CA265_RS00715 at 167.628 kb on + strand, within CA265_RS00715 at 167.628 kb on + strand, within CA265_RS00715 at 167.636 kb on - strand, within CA265_RS00715 at 167.638 kb on + strand, within CA265_RS00715 at 167.653 kb on - strand, within CA265_RS00715 at 167.656 kb on + strand, within CA265_RS00715 at 167.657 kb on - strand, within CA265_RS00715 at 167.703 kb on + strand, within CA265_RS00715 at 167.704 kb on - strand, within CA265_RS00715 at 167.713 kb on - strand, within CA265_RS00715 at 167.889 kb on - strand, within CA265_RS00715 at 167.889 kb on - strand, within CA265_RS00715 at 167.938 kb on - strand, within CA265_RS00715 at 167.938 kb on - strand, within CA265_RS00715 at 167.941 kb on - strand, within CA265_RS00715 at 167.957 kb on - strand, within CA265_RS00715 at 167.960 kb on - strand, within CA265_RS00715 at 167.960 kb on - strand, within CA265_RS00715 at 168.163 kb on + strand, within CA265_RS00715 at 168.164 kb on - strand, within CA265_RS00715 at 168.241 kb on + strand, within CA265_RS00715 at 168.248 kb on + strand, within CA265_RS00715 at 168.261 kb on + strand, within CA265_RS00715 at 168.261 kb on + strand, within CA265_RS00715 at 168.265 kb on + strand, within CA265_RS00715 at 168.294 kb on - strand, within CA265_RS00715 at 168.313 kb on + strand, within CA265_RS00715 at 168.319 kb on + strand, within CA265_RS00715 at 168.320 kb on - strand, within CA265_RS00715 at 168.438 kb on + strand at 168.500 kb on + strand at 168.521 kb on + strand at 168.522 kb on - strand at 168.528 kb on + strand at 168.528 kb on + strand at 168.529 kb on - strand at 168.552 kb on + strand at 168.617 kb on - strand at 168.618 kb on + strand at 168.627 kb on - strand at 168.712 kb on - strand at 168.778 kb on - strand at 168.827 kb on + strand at 168.851 kb on + strand at 168.862 kb on + strand at 168.894 kb on - strand at 168.897 kb on + strand at 168.897 kb on + strand at 168.897 kb on + strand at 168.898 kb on - strand at 168.898 kb on - strand at 168.929 kb on - strand at 168.958 kb on - strand, within CA265_RS00720 at 168.983 kb on + strand, within CA265_RS00720 at 168.983 kb on + strand, within CA265_RS00720 at 168.983 kb on + strand, within CA265_RS00720 at 168.983 kb on + strand, within CA265_RS00720 at 168.988 kb on - strand, within CA265_RS00720 at 169.004 kb on - strand, within CA265_RS00720 at 169.029 kb on - strand, within CA265_RS00720 at 169.029 kb on - strand, within CA265_RS00720 at 169.029 kb on - strand, within CA265_RS00720 at 169.094 kb on - strand, within CA265_RS00720 at 169.113 kb on - strand, within CA265_RS00720 at 169.142 kb on - strand, within CA265_RS00720 at 169.154 kb on + strand, within CA265_RS00720 at 169.220 kb on + strand, within CA265_RS00720 at 169.221 kb on - strand, within CA265_RS00720 at 169.302 kb on - strand, within CA265_RS00720 at 169.470 kb on + strand, within CA265_RS00720 at 169.471 kb on - strand, within CA265_RS00720 at 169.547 kb on - strand, within CA265_RS00720 at 169.583 kb on + strand, within CA265_RS00720 at 169.682 kb on + strand, within CA265_RS00720 at 169.682 kb on + strand, within CA265_RS00720 at 169.683 kb on - strand, within CA265_RS00720 at 169.689 kb on - strand, within CA265_RS00720
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.06 mg/ml remove 164,689 + CA265_RS00710 0.83 -0.7 164,703 + CA265_RS00710 0.84 -0.9 164,717 - CA265_RS00710 0.84 -2.1 164,726 + CA265_RS00710 0.84 -0.3 164,733 + CA265_RS00710 0.85 -0.4 164,737 + CA265_RS00710 0.85 +1.0 164,738 - CA265_RS00710 0.85 +1.9 164,743 + CA265_RS00710 0.85 -0.8 164,848 + CA265_RS00710 0.87 +0.9 164,917 - CA265_RS00710 0.89 -0.8 164,917 - CA265_RS00710 0.89 +1.0 164,920 - CA265_RS00710 0.89 +0.2 164,951 + CA265_RS00710 0.90 -1.5 164,964 + -0.3 164,985 + -1.7 164,986 - -0.5 165,039 + -1.7 165,039 + -1.2 165,065 - +0.6 165,079 - -0.2 165,092 + -0.8 165,095 + -1.5 165,095 + -1.7 165,154 - +0.2 165,178 - +0.2 165,178 - -0.3 165,250 - +1.6 165,356 - +0.5 165,360 + -1.1 165,407 + -1.6 165,421 - -0.8 165,553 + -2.4 165,573 + -3.1 165,637 + +0.5 165,638 - -0.3 165,639 + -0.5 165,640 - +0.6 165,666 - +0.3 165,686 + -0.4 165,686 + -0.1 165,687 - -0.5 165,689 - +0.2 165,696 - -0.4 165,721 - -0.6 165,721 - -0.7 165,726 - -0.2 165,743 + +0.7 165,743 + +0.8 165,805 - +0.9 165,813 + -0.3 165,889 - -0.3 165,893 + -0.8 165,894 - +0.4 165,894 - +0.5 165,903 - -0.3 165,937 + -0.1 165,972 - CA265_RS00715 0.11 +0.5 166,014 + CA265_RS00715 0.12 -0.4 166,015 - CA265_RS00715 0.12 +0.0 166,025 + CA265_RS00715 0.13 +0.7 166,025 + CA265_RS00715 0.13 +0.3 166,043 + CA265_RS00715 0.13 -0.2 166,092 + CA265_RS00715 0.15 +1.7 166,092 + CA265_RS00715 0.15 +1.5 166,116 + CA265_RS00715 0.16 -0.0 166,155 - CA265_RS00715 0.17 -0.8 166,155 - CA265_RS00715 0.17 -0.5 166,155 - CA265_RS00715 0.17 -0.3 166,191 + CA265_RS00715 0.18 -2.5 166,195 - CA265_RS00715 0.18 -0.2 166,211 + CA265_RS00715 0.19 +0.5 166,212 - CA265_RS00715 0.19 -2.0 166,247 - CA265_RS00715 0.20 +0.1 166,272 - CA265_RS00715 0.21 +0.3 166,285 - CA265_RS00715 0.21 -1.4 166,290 - CA265_RS00715 0.21 -0.1 166,301 + CA265_RS00715 0.22 +0.9 166,301 + CA265_RS00715 0.22 -0.9 166,332 + CA265_RS00715 0.23 +3.2 166,410 - CA265_RS00715 0.25 +0.1 166,440 - CA265_RS00715 0.26 -0.3 166,458 + CA265_RS00715 0.27 -0.3 166,463 + CA265_RS00715 0.27 -0.3 166,463 + CA265_RS00715 0.27 +0.9 166,464 - CA265_RS00715 0.27 -1.0 166,465 + CA265_RS00715 0.27 +0.5 166,466 - CA265_RS00715 0.27 -0.3 166,566 - CA265_RS00715 0.30 +0.9 166,566 - CA265_RS00715 0.30 +0.6 166,586 + CA265_RS00715 0.31 -0.2 166,614 + CA265_RS00715 0.32 -0.3 166,669 + CA265_RS00715 0.34 -1.2 166,670 - CA265_RS00715 0.34 -0.8 166,687 - CA265_RS00715 0.34 -0.1 166,733 - CA265_RS00715 0.36 -0.2 166,770 + CA265_RS00715 0.37 -0.2 166,787 + CA265_RS00715 0.37 +0.2 166,852 - CA265_RS00715 0.40 +0.8 166,956 + CA265_RS00715 0.43 +0.0 166,957 - CA265_RS00715 0.43 +0.5 167,029 + CA265_RS00715 0.45 +0.3 167,038 - CA265_RS00715 0.46 -0.8 167,088 - CA265_RS00715 0.47 +1.0 167,099 + CA265_RS00715 0.48 -0.0 167,125 - CA265_RS00715 0.49 +0.2 167,201 + CA265_RS00715 0.51 -2.0 167,201 + CA265_RS00715 0.51 -1.1 167,202 - CA265_RS00715 0.51 +0.6 167,202 - -0.3 167,310 + CA265_RS00715 0.55 -1.6 167,322 + CA265_RS00715 0.55 -1.4 167,323 - CA265_RS00715 0.55 -1.0 167,339 - CA265_RS00715 0.56 +1.7 167,388 + CA265_RS00715 0.57 +0.0 167,389 - CA265_RS00715 0.57 +0.3 167,389 - CA265_RS00715 0.57 +0.1 167,411 - CA265_RS00715 0.58 +0.7 167,413 - CA265_RS00715 0.58 -0.3 167,471 - CA265_RS00715 0.60 +0.3 167,551 - CA265_RS00715 0.62 -0.1 167,587 + CA265_RS00715 0.64 -1.5 167,595 + CA265_RS00715 0.64 -0.5 167,595 + CA265_RS00715 0.64 -1.6 167,628 + CA265_RS00715 0.65 -1.0 167,628 + CA265_RS00715 0.65 -0.6 167,636 - CA265_RS00715 0.65 -0.9 167,638 + CA265_RS00715 0.65 -0.8 167,653 - CA265_RS00715 0.66 -1.0 167,656 + CA265_RS00715 0.66 -1.4 167,657 - CA265_RS00715 0.66 -2.6 167,703 + CA265_RS00715 0.67 -0.9 167,704 - CA265_RS00715 0.67 +0.3 167,713 - CA265_RS00715 0.68 -0.7 167,889 - CA265_RS00715 0.73 -0.3 167,889 - CA265_RS00715 0.73 +0.6 167,938 - CA265_RS00715 0.75 -0.8 167,938 - CA265_RS00715 0.75 +0.0 167,941 - CA265_RS00715 0.75 +0.1 167,957 - CA265_RS00715 0.76 +0.2 167,960 - CA265_RS00715 0.76 +0.6 167,960 - CA265_RS00715 0.76 +1.2 168,163 + CA265_RS00715 0.82 -0.5 168,164 - CA265_RS00715 0.82 -0.0 168,241 + CA265_RS00715 0.85 -2.6 168,248 + CA265_RS00715 0.85 -1.2 168,261 + CA265_RS00715 0.86 -0.6 168,261 + CA265_RS00715 0.86 -3.8 168,265 + CA265_RS00715 0.86 -1.0 168,294 - CA265_RS00715 0.87 -0.4 168,313 + CA265_RS00715 0.87 -1.0 168,319 + CA265_RS00715 0.88 -1.4 168,320 - CA265_RS00715 0.88 -0.4 168,438 + -2.0 168,500 + -3.2 168,521 + -3.2 168,522 - +0.0 168,528 + -2.5 168,528 + -2.9 168,529 - +0.7 168,552 + -2.0 168,617 - +0.9 168,618 + -1.1 168,627 - -1.5 168,712 - +0.1 168,778 - -0.1 168,827 + -0.8 168,851 + -0.9 168,862 + -0.5 168,894 - -0.8 168,897 + +1.2 168,897 + -0.8 168,897 + -0.3 168,898 - +0.2 168,898 - -0.8 168,929 - +0.0 168,958 - CA265_RS00720 0.10 +1.3 168,983 + CA265_RS00720 0.12 +0.2 168,983 + CA265_RS00720 0.12 +1.0 168,983 + CA265_RS00720 0.12 -0.6 168,983 + CA265_RS00720 0.12 -1.0 168,988 - CA265_RS00720 0.12 -0.3 169,004 - CA265_RS00720 0.13 -0.2 169,029 - CA265_RS00720 0.14 +0.4 169,029 - CA265_RS00720 0.14 -0.4 169,029 - CA265_RS00720 0.14 -0.7 169,094 - CA265_RS00720 0.18 -0.5 169,113 - CA265_RS00720 0.19 -0.3 169,142 - CA265_RS00720 0.21 +0.1 169,154 + CA265_RS00720 0.22 -2.3 169,220 + CA265_RS00720 0.26 -1.2 169,221 - CA265_RS00720 0.26 +0.8 169,302 - CA265_RS00720 0.31 -0.3 169,470 + CA265_RS00720 0.41 -0.8 169,471 - CA265_RS00720 0.41 +0.6 169,547 - CA265_RS00720 0.45 +0.0 169,583 + CA265_RS00720 0.47 -2.0 169,682 + CA265_RS00720 0.53 -2.7 169,682 + CA265_RS00720 0.53 +0.2 169,683 - CA265_RS00720 0.53 -0.4 169,689 - CA265_RS00720 0.54 -0.6
Or see this region's nucleotide sequence