Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS00130

Experiment: R2A with Vancomycin 0.06 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS00120 and CA265_RS00125 are separated by 24 nucleotidesCA265_RS00125 and CA265_RS00130 are separated by 0 nucleotidesCA265_RS00130 and CA265_RS00135 overlap by 4 nucleotides CA265_RS00120: CA265_RS00120 - peptidase S8, at 24,379 to 26,148 _RS00120 CA265_RS00125: CA265_RS00125 - polysaccharide deacetylase, at 26,173 to 26,955 _RS00125 CA265_RS00130: CA265_RS00130 - glycosyltransferase, at 26,956 to 27,888 _RS00130 CA265_RS00135: CA265_RS00135 - hypothetical protein, at 27,885 to 29,069 _RS00135 Position (kb) 26 27 28Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 25.988 kb on + strandat 25.989 kb on - strandat 25.997 kb on + strandat 26.008 kb on + strandat 26.064 kb on + strandat 26.064 kb on + strandat 26.084 kb on + strandat 26.101 kb on - strandat 26.107 kb on - strandat 26.107 kb on - strandat 26.143 kb on - strandat 26.146 kb on + strandat 26.150 kb on + strandat 26.166 kb on - strandat 26.166 kb on - strandat 26.297 kb on + strand, within CA265_RS00125at 26.330 kb on - strand, within CA265_RS00125at 26.362 kb on - strand, within CA265_RS00125at 26.364 kb on + strand, within CA265_RS00125at 26.369 kb on + strand, within CA265_RS00125at 26.408 kb on + strand, within CA265_RS00125at 26.553 kb on - strand, within CA265_RS00125at 26.576 kb on + strand, within CA265_RS00125at 26.576 kb on + strand, within CA265_RS00125at 26.577 kb on - strand, within CA265_RS00125at 26.577 kb on - strand, within CA265_RS00125at 26.583 kb on - strand, within CA265_RS00125at 26.675 kb on - strand, within CA265_RS00125at 26.717 kb on + strand, within CA265_RS00125at 26.793 kb on + strand, within CA265_RS00125at 26.838 kb on + strand, within CA265_RS00125at 26.839 kb on - strand, within CA265_RS00125at 26.856 kb on + strand, within CA265_RS00125at 26.970 kb on + strandat 26.970 kb on + strandat 26.989 kb on - strandat 26.991 kb on - strandat 26.991 kb on - strandat 27.015 kb on + strandat 27.032 kb on + strandat 27.033 kb on - strandat 27.037 kb on - strandat 27.041 kb on - strandat 27.041 kb on - strandat 27.042 kb on + strandat 27.094 kb on + strand, within CA265_RS00130at 27.095 kb on - strand, within CA265_RS00130at 27.153 kb on + strand, within CA265_RS00130at 27.154 kb on - strand, within CA265_RS00130at 27.156 kb on - strand, within CA265_RS00130at 27.156 kb on - strand, within CA265_RS00130at 27.156 kb on - strand, within CA265_RS00130at 27.156 kb on - strand, within CA265_RS00130at 27.192 kb on - strand, within CA265_RS00130at 27.203 kb on + strand, within CA265_RS00130at 27.214 kb on + strand, within CA265_RS00130at 27.228 kb on + strand, within CA265_RS00130at 27.268 kb on - strand, within CA265_RS00130at 27.269 kb on + strand, within CA265_RS00130at 27.270 kb on - strand, within CA265_RS00130at 27.273 kb on + strand, within CA265_RS00130at 27.313 kb on - strand, within CA265_RS00130at 27.324 kb on + strand, within CA265_RS00130at 27.409 kb on + strand, within CA265_RS00130at 27.502 kb on - strand, within CA265_RS00130at 27.505 kb on + strand, within CA265_RS00130at 27.514 kb on - strand, within CA265_RS00130at 27.533 kb on + strand, within CA265_RS00130at 27.533 kb on + strand, within CA265_RS00130at 27.534 kb on - strand, within CA265_RS00130at 27.535 kb on + strandat 27.536 kb on - strand, within CA265_RS00130at 27.566 kb on - strand, within CA265_RS00130at 27.619 kb on + strand, within CA265_RS00130at 27.620 kb on - strand, within CA265_RS00130at 27.701 kb on - strand, within CA265_RS00130at 27.788 kb on + strand, within CA265_RS00130at 27.816 kb on + strandat 27.830 kb on - strandat 27.865 kb on + strandat 27.866 kb on - strandat 27.868 kb on + strandat 27.870 kb on + strandat 27.878 kb on - strandat 27.939 kb on + strandat 27.940 kb on - strandat 27.985 kb on - strandat 28.047 kb on - strand, within CA265_RS00135at 28.068 kb on + strand, within CA265_RS00135at 28.071 kb on + strand, within CA265_RS00135at 28.133 kb on + strand, within CA265_RS00135at 28.139 kb on - strand, within CA265_RS00135at 28.139 kb on - strand, within CA265_RS00135at 28.163 kb on + strand, within CA265_RS00135at 28.167 kb on + strand, within CA265_RS00135at 28.168 kb on - strand, within CA265_RS00135at 28.188 kb on - strand, within CA265_RS00135at 28.198 kb on - strand, within CA265_RS00135at 28.209 kb on - strand, within CA265_RS00135at 28.244 kb on - strand, within CA265_RS00135at 28.462 kb on - strand, within CA265_RS00135at 28.462 kb on - strand, within CA265_RS00135at 28.485 kb on + strand, within CA265_RS00135at 28.551 kb on + strand, within CA265_RS00135at 28.626 kb on + strand, within CA265_RS00135at 28.626 kb on + strandat 28.629 kb on + strand, within CA265_RS00135at 28.629 kb on + strand, within CA265_RS00135at 28.650 kb on - strand, within CA265_RS00135at 28.674 kb on + strandat 28.692 kb on + strand, within CA265_RS00135at 28.692 kb on + strand, within CA265_RS00135at 28.692 kb on + strand, within CA265_RS00135at 28.693 kb on - strand, within CA265_RS00135at 28.693 kb on - strand, within CA265_RS00135at 28.703 kb on + strand, within CA265_RS00135at 28.703 kb on + strand, within CA265_RS00135at 28.707 kb on - strand, within CA265_RS00135at 28.756 kb on - strand, within CA265_RS00135at 28.761 kb on + strand, within CA265_RS00135at 28.773 kb on - strand, within CA265_RS00135at 28.803 kb on + strand, within CA265_RS00135at 28.803 kb on + strand, within CA265_RS00135at 28.856 kb on + strand, within CA265_RS00135at 28.857 kb on - strand, within CA265_RS00135at 28.865 kb on - strand, within CA265_RS00135at 28.877 kb on + strand, within CA265_RS00135at 28.878 kb on - strand, within CA265_RS00135

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.06 mg/ml
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25,988 + -2.6
25,989 - -0.5
25,997 + -2.5
26,008 + -0.5
26,064 + -2.1
26,064 + -1.5
26,084 + -1.9
26,101 - -2.5
26,107 - -2.0
26,107 - -1.1
26,143 - +0.9
26,146 + -1.9
26,150 + -2.3
26,166 - +1.6
26,166 - -0.9
26,297 + CA265_RS00125 0.16 -2.0
26,330 - CA265_RS00125 0.20 -3.2
26,362 - CA265_RS00125 0.24 -2.7
26,364 + CA265_RS00125 0.24 +1.0
26,369 + CA265_RS00125 0.25 -1.3
26,408 + CA265_RS00125 0.30 -0.8
26,553 - CA265_RS00125 0.49 -2.3
26,576 + CA265_RS00125 0.51 -1.1
26,576 + CA265_RS00125 0.51 -0.8
26,577 - CA265_RS00125 0.52 -2.7
26,577 - CA265_RS00125 0.52 -1.6
26,583 - CA265_RS00125 0.52 -0.8
26,675 - CA265_RS00125 0.64 -1.7
26,717 + CA265_RS00125 0.69 -1.4
26,793 + CA265_RS00125 0.79 -3.0
26,838 + CA265_RS00125 0.85 -2.4
26,839 - CA265_RS00125 0.85 -2.6
26,856 + CA265_RS00125 0.87 -2.0
26,970 + -0.5
26,970 + -1.8
26,989 - -2.9
26,991 - -2.1
26,991 - -1.5
27,015 + -2.6
27,032 + -1.0
27,033 - -0.0
27,037 - -2.4
27,041 - -2.5
27,041 - -1.7
27,042 + +0.0
27,094 + CA265_RS00130 0.15 -1.8
27,095 - CA265_RS00130 0.15 -2.0
27,153 + CA265_RS00130 0.21 -1.5
27,154 - CA265_RS00130 0.21 -1.3
27,156 - CA265_RS00130 0.21 -1.4
27,156 - CA265_RS00130 0.21 -2.3
27,156 - CA265_RS00130 0.21 -2.3
27,156 - CA265_RS00130 0.21 -0.7
27,192 - CA265_RS00130 0.25 -1.2
27,203 + CA265_RS00130 0.26 -1.1
27,214 + CA265_RS00130 0.28 -1.9
27,228 + CA265_RS00130 0.29 -2.9
27,268 - CA265_RS00130 0.33 -1.1
27,269 + CA265_RS00130 0.34 -0.3
27,270 - CA265_RS00130 0.34 -2.1
27,273 + CA265_RS00130 0.34 -2.7
27,313 - CA265_RS00130 0.38 -2.2
27,324 + CA265_RS00130 0.39 -2.8
27,409 + CA265_RS00130 0.49 -1.6
27,502 - CA265_RS00130 0.59 -1.6
27,505 + CA265_RS00130 0.59 -2.0
27,514 - CA265_RS00130 0.60 -1.2
27,533 + CA265_RS00130 0.62 -3.0
27,533 + CA265_RS00130 0.62 -2.8
27,534 - CA265_RS00130 0.62 -1.0
27,535 + +1.6
27,536 - CA265_RS00130 0.62 -1.9
27,566 - CA265_RS00130 0.65 -1.5
27,619 + CA265_RS00130 0.71 -2.2
27,620 - CA265_RS00130 0.71 -2.5
27,701 - CA265_RS00130 0.80 -4.0
27,788 + CA265_RS00130 0.89 +0.7
27,816 + -2.6
27,830 - -1.8
27,865 + -1.9
27,866 - -1.8
27,868 + -0.6
27,870 + -1.4
27,878 - -2.8
27,939 + -1.0
27,940 - -0.1
27,985 - -1.3
28,047 - CA265_RS00135 0.14 +0.5
28,068 + CA265_RS00135 0.15 -1.7
28,071 + CA265_RS00135 0.16 -2.8
28,133 + CA265_RS00135 0.21 -2.4
28,139 - CA265_RS00135 0.21 -2.1
28,139 - CA265_RS00135 0.21 -0.8
28,163 + CA265_RS00135 0.23 -2.7
28,167 + CA265_RS00135 0.24 +0.6
28,168 - CA265_RS00135 0.24 -2.7
28,188 - CA265_RS00135 0.26 -1.7
28,198 - CA265_RS00135 0.26 +0.3
28,209 - CA265_RS00135 0.27 -0.8
28,244 - CA265_RS00135 0.30 -2.4
28,462 - CA265_RS00135 0.49 -1.0
28,462 - CA265_RS00135 0.49 +4.0
28,485 + CA265_RS00135 0.51 -1.9
28,551 + CA265_RS00135 0.56 -2.0
28,626 + CA265_RS00135 0.63 -2.7
28,626 + +2.0
28,629 + CA265_RS00135 0.63 -1.3
28,629 + CA265_RS00135 0.63 -1.8
28,650 - CA265_RS00135 0.65 -0.0
28,674 + +1.0
28,692 + CA265_RS00135 0.68 -2.0
28,692 + CA265_RS00135 0.68 -1.2
28,692 + CA265_RS00135 0.68 -3.5
28,693 - CA265_RS00135 0.68 +0.2
28,693 - CA265_RS00135 0.68 +0.2
28,703 + CA265_RS00135 0.69 -1.9
28,703 + CA265_RS00135 0.69 -3.2
28,707 - CA265_RS00135 0.69 -0.5
28,756 - CA265_RS00135 0.74 +0.3
28,761 + CA265_RS00135 0.74 -1.1
28,773 - CA265_RS00135 0.75 -1.5
28,803 + CA265_RS00135 0.77 -0.6
28,803 + CA265_RS00135 0.77 -2.0
28,856 + CA265_RS00135 0.82 -2.1
28,857 - CA265_RS00135 0.82 -1.9
28,865 - CA265_RS00135 0.83 -0.6
28,877 + CA265_RS00135 0.84 -1.1
28,878 - CA265_RS00135 0.84 -1.1

Or see this region's nucleotide sequence