Experiment: nitrite 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_622 and Ac3H11_623 are separated by 97 nucleotides Ac3H11_623 and Ac3H11_624 are separated by 110 nucleotides Ac3H11_624 and Ac3H11_625 are separated by 176 nucleotides
Ac3H11_622 - Transcriptional regulator, LysR family, at 61,610 to 62,554
_622
Ac3H11_623 - Permeases of the major facilitator superfamily, at 62,652 to 63,863
_623
Ac3H11_624 - Uncharacterized protein conserved in bacteria, at 63,974 to 64,573
_624
Ac3H11_625 - hypothetical protein, at 64,750 to 64,881
_625
Position (kb) 62
63
64 Strain fitness (log2 ratio) -2
-1
0
1 at 61.690 kb on - strand at 61.702 kb on - strand at 61.707 kb on + strand, within Ac3H11_622 at 61.716 kb on + strand, within Ac3H11_622 at 61.716 kb on + strand, within Ac3H11_622 at 61.716 kb on + strand, within Ac3H11_622 at 61.716 kb on + strand, within Ac3H11_622 at 61.717 kb on - strand, within Ac3H11_622 at 61.717 kb on - strand, within Ac3H11_622 at 61.807 kb on + strand, within Ac3H11_622 at 61.807 kb on + strand, within Ac3H11_622 at 61.807 kb on + strand, within Ac3H11_622 at 61.808 kb on - strand, within Ac3H11_622 at 61.848 kb on + strand, within Ac3H11_622 at 61.936 kb on - strand, within Ac3H11_622 at 62.181 kb on + strand, within Ac3H11_622 at 62.181 kb on + strand, within Ac3H11_622 at 62.181 kb on + strand, within Ac3H11_622 at 62.182 kb on - strand, within Ac3H11_622 at 62.182 kb on - strand, within Ac3H11_622 at 62.182 kb on - strand, within Ac3H11_622 at 62.182 kb on - strand, within Ac3H11_622 at 62.182 kb on - strand, within Ac3H11_622 at 62.365 kb on + strand, within Ac3H11_622 at 62.365 kb on + strand, within Ac3H11_622 at 62.365 kb on + strand, within Ac3H11_622 at 62.365 kb on + strand, within Ac3H11_622 at 62.365 kb on + strand, within Ac3H11_622 at 62.365 kb on + strand, within Ac3H11_622 at 62.366 kb on - strand, within Ac3H11_622 at 62.366 kb on - strand, within Ac3H11_622 at 62.588 kb on + strand at 62.591 kb on + strand at 62.629 kb on - strand at 62.763 kb on + strand at 62.764 kb on - strand at 62.767 kb on - strand at 62.767 kb on - strand at 62.830 kb on + strand, within Ac3H11_623 at 62.830 kb on + strand, within Ac3H11_623 at 63.180 kb on + strand, within Ac3H11_623 at 63.180 kb on + strand, within Ac3H11_623 at 63.180 kb on + strand, within Ac3H11_623 at 63.180 kb on + strand, within Ac3H11_623 at 63.180 kb on + strand, within Ac3H11_623 at 63.180 kb on + strand, within Ac3H11_623 at 63.181 kb on - strand, within Ac3H11_623 at 63.181 kb on - strand, within Ac3H11_623 at 63.181 kb on - strand, within Ac3H11_623 at 63.672 kb on + strand, within Ac3H11_623 at 63.672 kb on + strand, within Ac3H11_623 at 63.673 kb on - strand, within Ac3H11_623 at 63.871 kb on - strand at 63.999 kb on + strand at 63.999 kb on + strand at 64.186 kb on - strand, within Ac3H11_624 at 64.649 kb on + strand at 64.689 kb on + strand at 64.689 kb on + strand at 64.689 kb on + strand at 64.690 kb on - strand at 64.690 kb on - strand at 64.719 kb on + strand at 64.719 kb on + strand at 64.719 kb on + strand at 64.719 kb on + strand at 64.719 kb on + strand at 64.719 kb on + strand at 64.719 kb on + strand at 64.720 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 10 mM remove 61,690 - +1.4 61,702 - +0.2 61,707 + Ac3H11_622 0.10 -1.2 61,716 + Ac3H11_622 0.11 -0.3 61,716 + Ac3H11_622 0.11 -0.3 61,716 + Ac3H11_622 0.11 +0.0 61,716 + Ac3H11_622 0.11 -0.8 61,717 - Ac3H11_622 0.11 -0.6 61,717 - Ac3H11_622 0.11 -1.4 61,807 + Ac3H11_622 0.21 -0.6 61,807 + Ac3H11_622 0.21 -0.2 61,807 + Ac3H11_622 0.21 -0.1 61,808 - Ac3H11_622 0.21 -2.4 61,848 + Ac3H11_622 0.25 -0.3 61,936 - Ac3H11_622 0.34 -2.3 62,181 + Ac3H11_622 0.60 -0.1 62,181 + Ac3H11_622 0.60 -1.8 62,181 + Ac3H11_622 0.60 -1.1 62,182 - Ac3H11_622 0.61 -1.5 62,182 - Ac3H11_622 0.61 +0.5 62,182 - Ac3H11_622 0.61 -0.1 62,182 - Ac3H11_622 0.61 -1.1 62,182 - Ac3H11_622 0.61 +0.6 62,365 + Ac3H11_622 0.80 -0.6 62,365 + Ac3H11_622 0.80 -0.8 62,365 + Ac3H11_622 0.80 -0.3 62,365 + Ac3H11_622 0.80 +0.2 62,365 + Ac3H11_622 0.80 +0.2 62,365 + Ac3H11_622 0.80 -0.3 62,366 - Ac3H11_622 0.80 -1.0 62,366 - Ac3H11_622 0.80 -0.2 62,588 + -1.3 62,591 + -0.5 62,629 - +0.0 62,763 + -2.1 62,764 - +0.4 62,767 - +0.8 62,767 - +0.1 62,830 + Ac3H11_623 0.15 -0.5 62,830 + Ac3H11_623 0.15 +0.5 63,180 + Ac3H11_623 0.44 -0.1 63,180 + Ac3H11_623 0.44 +1.5 63,180 + Ac3H11_623 0.44 -0.2 63,180 + Ac3H11_623 0.44 -1.6 63,180 + Ac3H11_623 0.44 +0.3 63,180 + Ac3H11_623 0.44 +0.8 63,181 - Ac3H11_623 0.44 -0.7 63,181 - Ac3H11_623 0.44 -1.1 63,181 - Ac3H11_623 0.44 +1.2 63,672 + Ac3H11_623 0.84 -2.6 63,672 + Ac3H11_623 0.84 -0.8 63,673 - Ac3H11_623 0.84 -0.1 63,871 - -1.3 63,999 + +0.5 63,999 + -0.3 64,186 - Ac3H11_624 0.35 -1.1 64,649 + -0.8 64,689 + -0.8 64,689 + -0.8 64,689 + +1.7 64,690 - -1.1 64,690 - -1.0 64,719 + +0.8 64,719 + -1.1 64,719 + +0.4 64,719 + -0.5 64,719 + -1.0 64,719 + -0.1 64,719 + -0.1 64,720 - -0.8
Or see this region's nucleotide sequence