Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4507

Experiment: nitrite 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4505 and Ac3H11_4506 are separated by 21 nucleotidesAc3H11_4506 and Ac3H11_4507 are separated by 102 nucleotidesAc3H11_4507 and Ac3H11_4508 are separated by 97 nucleotides Ac3H11_4505 - Putative PROLIN-rich signal peptide protein, at 99,089 to 100,255 _4505 Ac3H11_4506 - Transcriptional regulator, IclR family, at 100,277 to 101,059 _4506 Ac3H11_4507 - Fumarylacetoacetate hydrolase family protein, at 101,162 to 102,175 _4507 Ac3H11_4508 - Tricarboxylate transport protein TctC, at 102,273 to 103,250 _4508 Position (kb) 101 102 103Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 100.462 kb on + strand, within Ac3H11_4506at 100.463 kb on - strand, within Ac3H11_4506at 100.920 kb on + strand, within Ac3H11_4506at 101.067 kb on - strandat 101.100 kb on + strandat 101.111 kb on - strandat 101.111 kb on - strandat 101.174 kb on - strandat 101.177 kb on + strandat 101.177 kb on + strandat 101.177 kb on + strandat 101.177 kb on + strandat 101.178 kb on - strandat 101.178 kb on - strandat 101.178 kb on - strandat 101.178 kb on - strandat 101.240 kb on + strandat 101.241 kb on - strandat 101.318 kb on + strand, within Ac3H11_4507at 101.319 kb on - strand, within Ac3H11_4507at 101.319 kb on - strand, within Ac3H11_4507at 101.399 kb on + strand, within Ac3H11_4507at 101.423 kb on + strand, within Ac3H11_4507at 101.423 kb on + strand, within Ac3H11_4507at 101.424 kb on - strand, within Ac3H11_4507at 101.424 kb on - strand, within Ac3H11_4507at 101.424 kb on - strand, within Ac3H11_4507at 101.424 kb on - strand, within Ac3H11_4507at 101.483 kb on + strand, within Ac3H11_4507at 101.483 kb on + strandat 101.484 kb on - strand, within Ac3H11_4507at 101.501 kb on + strand, within Ac3H11_4507at 101.501 kb on + strand, within Ac3H11_4507at 101.502 kb on - strand, within Ac3H11_4507at 101.502 kb on - strand, within Ac3H11_4507at 101.502 kb on - strand, within Ac3H11_4507at 101.502 kb on - strand, within Ac3H11_4507at 101.502 kb on - strand, within Ac3H11_4507at 101.502 kb on - strand, within Ac3H11_4507at 102.012 kb on - strand, within Ac3H11_4507at 102.253 kb on - strandat 102.255 kb on + strandat 102.255 kb on + strandat 102.255 kb on + strandat 102.573 kb on + strand, within Ac3H11_4508at 102.573 kb on + strand, within Ac3H11_4508at 102.573 kb on + strand, within Ac3H11_4508at 102.573 kb on + strand, within Ac3H11_4508at 102.574 kb on - strand, within Ac3H11_4508at 102.574 kb on - strand, within Ac3H11_4508at 102.627 kb on + strand, within Ac3H11_4508at 102.628 kb on - strand, within Ac3H11_4508at 102.628 kb on - strand, within Ac3H11_4508at 102.628 kb on - strand, within Ac3H11_4508at 102.628 kb on - strand, within Ac3H11_4508at 102.628 kb on - strand, within Ac3H11_4508at 102.711 kb on + strand, within Ac3H11_4508at 102.711 kb on + strand, within Ac3H11_4508at 102.711 kb on + strand, within Ac3H11_4508at 102.711 kb on + strand, within Ac3H11_4508at 102.711 kb on + strand, within Ac3H11_4508at 102.711 kb on + strand, within Ac3H11_4508at 102.712 kb on - strand, within Ac3H11_4508at 102.712 kb on - strand, within Ac3H11_4508at 102.741 kb on + strand, within Ac3H11_4508at 102.741 kb on + strand, within Ac3H11_4508at 102.741 kb on + strand, within Ac3H11_4508at 102.741 kb on + strand, within Ac3H11_4508at 102.741 kb on + strand, within Ac3H11_4508at 102.741 kb on + strand, within Ac3H11_4508at 102.741 kb on + strand, within Ac3H11_4508at 102.742 kb on - strand, within Ac3H11_4508at 102.742 kb on - strand, within Ac3H11_4508at 102.742 kb on - strand, within Ac3H11_4508at 102.742 kb on - strand, within Ac3H11_4508at 102.742 kb on - strand, within Ac3H11_4508at 102.742 kb on - strand, within Ac3H11_4508at 102.742 kb on - strand, within Ac3H11_4508at 102.742 kb on - strand, within Ac3H11_4508at 102.742 kb on - strand, within Ac3H11_4508at 102.742 kb on - strand, within Ac3H11_4508at 102.742 kb on - strand, within Ac3H11_4508at 102.982 kb on + strand, within Ac3H11_4508at 102.982 kb on + strand, within Ac3H11_4508at 102.983 kb on - strand, within Ac3H11_4508at 102.983 kb on - strand, within Ac3H11_4508at 102.983 kb on - strand, within Ac3H11_4508at 102.983 kb on - strand, within Ac3H11_4508at 102.983 kb on - strand, within Ac3H11_4508at 102.983 kb on - strand, within Ac3H11_4508at 102.983 kb on - strand, within Ac3H11_4508

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 10 mM
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100,462 + Ac3H11_4506 0.24 +0.1
100,463 - Ac3H11_4506 0.24 -2.2
100,920 + Ac3H11_4506 0.82 -0.7
101,067 - -0.2
101,100 + -0.1
101,111 - +0.7
101,111 - +0.4
101,174 - -0.6
101,177 + -0.6
101,177 + -1.4
101,177 + -0.1
101,177 + +0.4
101,178 - -0.3
101,178 - -1.8
101,178 - -0.8
101,178 - +0.3
101,240 + -0.6
101,241 - -0.3
101,318 + Ac3H11_4507 0.15 -1.2
101,319 - Ac3H11_4507 0.15 +1.3
101,319 - Ac3H11_4507 0.15 -0.2
101,399 + Ac3H11_4507 0.23 -0.0
101,423 + Ac3H11_4507 0.26 +0.4
101,423 + Ac3H11_4507 0.26 -0.6
101,424 - Ac3H11_4507 0.26 -1.3
101,424 - Ac3H11_4507 0.26 -0.9
101,424 - Ac3H11_4507 0.26 -2.5
101,424 - Ac3H11_4507 0.26 -1.7
101,483 + Ac3H11_4507 0.32 +0.4
101,483 + +2.0
101,484 - Ac3H11_4507 0.32 -0.9
101,501 + Ac3H11_4507 0.33 +0.2
101,501 + Ac3H11_4507 0.33 -0.8
101,502 - Ac3H11_4507 0.34 -1.2
101,502 - Ac3H11_4507 0.34 -0.8
101,502 - Ac3H11_4507 0.34 +1.4
101,502 - Ac3H11_4507 0.34 -2.4
101,502 - Ac3H11_4507 0.34 -0.0
101,502 - Ac3H11_4507 0.34 +0.4
102,012 - Ac3H11_4507 0.84 -0.8
102,253 - +0.6
102,255 + -2.4
102,255 + -0.3
102,255 + -0.8
102,573 + Ac3H11_4508 0.31 -0.3
102,573 + Ac3H11_4508 0.31 +0.9
102,573 + Ac3H11_4508 0.31 +0.5
102,573 + Ac3H11_4508 0.31 +0.8
102,574 - Ac3H11_4508 0.31 -0.9
102,574 - Ac3H11_4508 0.31 -0.6
102,627 + Ac3H11_4508 0.36 -0.2
102,628 - Ac3H11_4508 0.36 +1.4
102,628 - Ac3H11_4508 0.36 -0.8
102,628 - Ac3H11_4508 0.36 -0.3
102,628 - Ac3H11_4508 0.36 -0.2
102,628 - Ac3H11_4508 0.36 -0.4
102,711 + Ac3H11_4508 0.45 +0.3
102,711 + Ac3H11_4508 0.45 -2.9
102,711 + Ac3H11_4508 0.45 -0.1
102,711 + Ac3H11_4508 0.45 -0.2
102,711 + Ac3H11_4508 0.45 -2.9
102,711 + Ac3H11_4508 0.45 -0.7
102,712 - Ac3H11_4508 0.45 +0.5
102,712 - Ac3H11_4508 0.45 +0.2
102,741 + Ac3H11_4508 0.48 +0.1
102,741 + Ac3H11_4508 0.48 +0.8
102,741 + Ac3H11_4508 0.48 +0.3
102,741 + Ac3H11_4508 0.48 +0.3
102,741 + Ac3H11_4508 0.48 +0.0
102,741 + Ac3H11_4508 0.48 -1.3
102,741 + Ac3H11_4508 0.48 +0.5
102,742 - Ac3H11_4508 0.48 +0.0
102,742 - Ac3H11_4508 0.48 +0.3
102,742 - Ac3H11_4508 0.48 +0.9
102,742 - Ac3H11_4508 0.48 +1.8
102,742 - Ac3H11_4508 0.48 -0.6
102,742 - Ac3H11_4508 0.48 -2.3
102,742 - Ac3H11_4508 0.48 -2.7
102,742 - Ac3H11_4508 0.48 -0.7
102,742 - Ac3H11_4508 0.48 -0.2
102,742 - Ac3H11_4508 0.48 +0.1
102,742 - Ac3H11_4508 0.48 -0.6
102,982 + Ac3H11_4508 0.72 +0.7
102,982 + Ac3H11_4508 0.72 +0.6
102,983 - Ac3H11_4508 0.73 -0.5
102,983 - Ac3H11_4508 0.73 +0.9
102,983 - Ac3H11_4508 0.73 +1.2
102,983 - Ac3H11_4508 0.73 +0.1
102,983 - Ac3H11_4508 0.73 -0.3
102,983 - Ac3H11_4508 0.73 -0.3
102,983 - Ac3H11_4508 0.73 +1.5

Or see this region's nucleotide sequence