Experiment: nitrite 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_4063 and Ac3H11_4064 are separated by 850 nucleotides Ac3H11_4064 and Ac3H11_4065 are separated by 345 nucleotides
Ac3H11_4063 - 2-hydroxychromene-2-carboxylate isomerase/DsbA-like thioredoxin domain, at 310,515 to 311,162
_4063
Ac3H11_4064 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 312,013 to 313,524
_4064
Ac3H11_4065 - FIG00349255: hypothetical protein, at 313,870 to 314,889
_4065
Position (kb) 312
313
314 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 311.175 kb on + strand at 311.175 kb on + strand at 311.197 kb on + strand at 311.197 kb on + strand at 311.197 kb on + strand at 311.198 kb on - strand at 311.198 kb on - strand at 311.198 kb on - strand at 311.198 kb on - strand at 311.198 kb on - strand at 311.241 kb on + strand at 311.242 kb on - strand at 311.257 kb on + strand at 311.257 kb on + strand at 311.268 kb on + strand at 311.268 kb on + strand at 311.268 kb on + strand at 311.268 kb on + strand at 311.268 kb on + strand at 311.268 kb on + strand at 311.268 kb on + strand at 311.268 kb on + strand at 311.269 kb on - strand at 311.269 kb on - strand at 311.269 kb on - strand at 311.269 kb on - strand at 311.269 kb on - strand at 311.269 kb on - strand at 311.270 kb on + strand at 311.270 kb on + strand at 311.270 kb on + strand at 311.270 kb on + strand at 311.270 kb on + strand at 311.270 kb on + strand at 311.270 kb on + strand at 311.270 kb on + strand at 311.270 kb on + strand at 311.271 kb on - strand at 311.271 kb on - strand at 311.271 kb on - strand at 311.271 kb on - strand at 311.271 kb on - strand at 311.271 kb on - strand at 311.271 kb on - strand at 311.271 kb on - strand at 311.271 kb on - strand at 311.271 kb on - strand at 311.271 kb on - strand at 311.397 kb on + strand at 311.397 kb on + strand at 311.397 kb on + strand at 311.397 kb on + strand at 311.397 kb on + strand at 311.397 kb on + strand at 311.397 kb on + strand at 311.397 kb on + strand at 311.397 kb on + strand at 311.398 kb on - strand at 311.398 kb on - strand at 311.398 kb on - strand at 311.398 kb on - strand at 311.468 kb on - strand at 311.473 kb on + strand at 311.505 kb on + strand at 311.505 kb on + strand at 311.506 kb on - strand at 311.506 kb on - strand at 311.520 kb on + strand at 311.520 kb on + strand at 311.520 kb on + strand at 311.520 kb on + strand at 311.520 kb on + strand at 311.520 kb on + strand at 311.521 kb on - strand at 311.521 kb on - strand at 311.521 kb on - strand at 311.551 kb on + strand at 311.634 kb on - strand at 311.690 kb on + strand at 311.690 kb on + strand at 311.690 kb on + strand at 311.690 kb on + strand at 311.690 kb on + strand at 311.691 kb on - strand at 311.691 kb on - strand at 311.691 kb on - strand at 311.691 kb on - strand at 311.765 kb on + strand at 311.766 kb on - strand at 311.766 kb on - strand at 311.774 kb on - strand at 311.853 kb on + strand at 311.896 kb on - strand at 311.896 kb on - strand at 311.911 kb on + strand at 311.911 kb on + strand at 311.912 kb on - strand at 311.982 kb on + strand at 311.983 kb on - strand at 311.990 kb on + strand at 311.990 kb on + strand at 311.990 kb on + strand at 311.990 kb on + strand at 311.990 kb on + strand at 311.991 kb on - strand at 311.991 kb on - strand at 311.991 kb on - strand at 311.991 kb on - strand at 311.991 kb on - strand at 311.991 kb on - strand at 312.008 kb on + strand at 312.008 kb on + strand at 312.009 kb on - strand at 312.009 kb on - strand at 312.014 kb on + strand at 312.014 kb on + strand at 312.014 kb on + strand at 312.015 kb on - strand at 312.015 kb on - strand at 312.053 kb on + strand at 312.053 kb on + strand at 312.179 kb on + strand, within Ac3H11_4064 at 312.179 kb on + strand, within Ac3H11_4064 at 312.180 kb on - strand, within Ac3H11_4064 at 312.281 kb on + strand, within Ac3H11_4064 at 312.282 kb on - strand, within Ac3H11_4064 at 312.282 kb on - strand, within Ac3H11_4064 at 312.375 kb on - strand, within Ac3H11_4064 at 312.375 kb on - strand, within Ac3H11_4064 at 312.375 kb on - strand, within Ac3H11_4064 at 312.635 kb on + strand, within Ac3H11_4064 at 312.636 kb on - strand, within Ac3H11_4064 at 312.636 kb on - strand, within Ac3H11_4064 at 312.643 kb on + strand, within Ac3H11_4064 at 312.643 kb on + strand, within Ac3H11_4064 at 312.643 kb on + strand, within Ac3H11_4064 at 312.643 kb on + strand, within Ac3H11_4064 at 312.644 kb on - strand, within Ac3H11_4064 at 312.644 kb on - strand, within Ac3H11_4064 at 312.692 kb on + strand, within Ac3H11_4064 at 312.692 kb on + strand, within Ac3H11_4064 at 312.693 kb on - strand, within Ac3H11_4064 at 312.693 kb on - strand, within Ac3H11_4064 at 312.829 kb on + strand, within Ac3H11_4064 at 312.829 kb on + strand, within Ac3H11_4064 at 312.830 kb on - strand, within Ac3H11_4064 at 312.830 kb on - strand, within Ac3H11_4064 at 312.830 kb on - strand, within Ac3H11_4064 at 312.830 kb on - strand, within Ac3H11_4064 at 312.900 kb on - strand, within Ac3H11_4064 at 312.900 kb on - strand, within Ac3H11_4064 at 312.900 kb on - strand, within Ac3H11_4064 at 312.900 kb on - strand, within Ac3H11_4064 at 312.905 kb on + strand, within Ac3H11_4064 at 312.905 kb on + strand, within Ac3H11_4064 at 312.905 kb on + strand, within Ac3H11_4064 at 312.905 kb on + strand, within Ac3H11_4064 at 312.905 kb on + strand, within Ac3H11_4064 at 312.906 kb on - strand, within Ac3H11_4064 at 312.906 kb on - strand, within Ac3H11_4064 at 312.938 kb on + strand, within Ac3H11_4064 at 312.938 kb on + strand, within Ac3H11_4064 at 312.938 kb on + strand, within Ac3H11_4064 at 312.939 kb on - strand, within Ac3H11_4064 at 312.983 kb on + strand, within Ac3H11_4064 at 312.983 kb on + strand, within Ac3H11_4064 at 312.983 kb on + strand, within Ac3H11_4064 at 312.983 kb on + strand, within Ac3H11_4064 at 312.984 kb on - strand, within Ac3H11_4064 at 312.984 kb on - strand, within Ac3H11_4064 at 312.984 kb on - strand, within Ac3H11_4064 at 312.984 kb on - strand, within Ac3H11_4064 at 312.984 kb on - strand, within Ac3H11_4064 at 313.001 kb on - strand, within Ac3H11_4064 at 313.058 kb on + strand, within Ac3H11_4064 at 313.058 kb on + strand, within Ac3H11_4064 at 313.058 kb on + strand, within Ac3H11_4064 at 313.058 kb on + strand, within Ac3H11_4064 at 313.059 kb on - strand, within Ac3H11_4064 at 313.059 kb on - strand, within Ac3H11_4064 at 313.059 kb on - strand, within Ac3H11_4064 at 313.131 kb on - strand, within Ac3H11_4064 at 313.131 kb on - strand, within Ac3H11_4064 at 313.131 kb on - strand, within Ac3H11_4064 at 313.245 kb on - strand, within Ac3H11_4064 at 313.245 kb on - strand, within Ac3H11_4064 at 313.271 kb on + strand, within Ac3H11_4064 at 313.271 kb on + strand, within Ac3H11_4064 at 313.271 kb on + strand, within Ac3H11_4064 at 313.272 kb on - strand, within Ac3H11_4064 at 313.272 kb on - strand, within Ac3H11_4064 at 313.329 kb on - strand, within Ac3H11_4064 at 313.329 kb on - strand, within Ac3H11_4064 at 313.349 kb on + strand, within Ac3H11_4064 at 313.349 kb on + strand, within Ac3H11_4064 at 313.350 kb on - strand, within Ac3H11_4064 at 313.350 kb on - strand, within Ac3H11_4064 at 313.350 kb on - strand, within Ac3H11_4064 at 313.350 kb on - strand, within Ac3H11_4064 at 313.436 kb on + strand at 313.436 kb on + strand at 313.618 kb on + strand at 313.618 kb on + strand at 313.618 kb on + strand at 313.618 kb on + strand at 313.618 kb on + strand at 313.618 kb on + strand at 313.619 kb on - strand at 313.619 kb on - strand at 313.619 kb on - strand at 313.619 kb on - strand at 313.619 kb on - strand at 313.619 kb on - strand at 313.653 kb on + strand at 313.653 kb on + strand at 313.653 kb on + strand at 313.653 kb on + strand at 313.653 kb on + strand at 313.653 kb on + strand at 313.653 kb on + strand at 313.654 kb on - strand at 313.654 kb on - strand at 313.654 kb on - strand at 313.762 kb on + strand at 314.020 kb on + strand, within Ac3H11_4065 at 314.020 kb on + strand, within Ac3H11_4065 at 314.020 kb on + strand, within Ac3H11_4065 at 314.021 kb on - strand, within Ac3H11_4065 at 314.102 kb on - strand, within Ac3H11_4065 at 314.102 kb on - strand, within Ac3H11_4065 at 314.102 kb on - strand, within Ac3H11_4065 at 314.311 kb on + strand, within Ac3H11_4065 at 314.312 kb on - strand, within Ac3H11_4065 at 314.312 kb on - strand, within Ac3H11_4065 at 314.312 kb on - strand, within Ac3H11_4065 at 314.407 kb on + strand, within Ac3H11_4065 at 314.407 kb on + strand, within Ac3H11_4065 at 314.407 kb on + strand, within Ac3H11_4065 at 314.407 kb on + strand, within Ac3H11_4065 at 314.407 kb on + strand, within Ac3H11_4065 at 314.407 kb on + strand, within Ac3H11_4065 at 314.407 kb on + strand, within Ac3H11_4065 at 314.408 kb on - strand, within Ac3H11_4065 at 314.491 kb on + strand, within Ac3H11_4065 at 314.491 kb on + strand, within Ac3H11_4065 at 314.491 kb on + strand, within Ac3H11_4065 at 314.492 kb on - strand, within Ac3H11_4065 at 314.492 kb on - strand, within Ac3H11_4065 at 314.492 kb on - strand, within Ac3H11_4065 at 314.492 kb on - strand, within Ac3H11_4065 at 314.492 kb on - strand, within Ac3H11_4065
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 10 mM remove 311,175 + -0.9 311,175 + -1.3 311,197 + +1.0 311,197 + +0.2 311,197 + +0.1 311,198 - -1.6 311,198 - -0.8 311,198 - +0.1 311,198 - +0.2 311,198 - -2.4 311,241 + +1.2 311,242 - -0.3 311,257 + +3.3 311,257 + +1.2 311,268 + -0.6 311,268 + -1.2 311,268 + -1.9 311,268 + -1.0 311,268 + -0.1 311,268 + -0.9 311,268 + +0.3 311,268 + -1.0 311,269 - +0.0 311,269 - +0.6 311,269 - -0.8 311,269 - +0.8 311,269 - -2.1 311,269 - -0.4 311,270 + -0.7 311,270 + -1.2 311,270 + -0.3 311,270 + +1.4 311,270 + -1.9 311,270 + -1.1 311,270 + +0.9 311,270 + -0.9 311,270 + +0.3 311,271 - -0.8 311,271 - -0.0 311,271 - -0.9 311,271 - -0.0 311,271 - +0.5 311,271 - +0.7 311,271 - +2.1 311,271 - -0.1 311,271 - +0.5 311,271 - +1.1 311,271 - +0.4 311,397 + +1.3 311,397 + -0.2 311,397 + -0.4 311,397 + -0.5 311,397 + +0.5 311,397 + +1.1 311,397 + +0.5 311,397 + -0.4 311,397 + -0.3 311,398 - -0.5 311,398 - +1.7 311,398 - +0.1 311,398 - -0.3 311,468 - -0.3 311,473 + +0.3 311,505 + -1.0 311,505 + -0.3 311,506 - +0.7 311,506 - +1.1 311,520 + -1.8 311,520 + -2.2 311,520 + +1.1 311,520 + +1.4 311,520 + -0.3 311,520 + -0.5 311,521 - -1.9 311,521 - +0.5 311,521 - +0.9 311,551 + +0.2 311,634 - +0.4 311,690 + -0.3 311,690 + +0.3 311,690 + -0.5 311,690 + -1.5 311,690 + -0.4 311,691 - +1.4 311,691 - +0.8 311,691 - -0.3 311,691 - -1.3 311,765 + -0.5 311,766 - +0.4 311,766 - +2.4 311,774 - -1.3 311,853 + +0.0 311,896 - -1.7 311,896 - -0.9 311,911 + +0.1 311,911 + +0.8 311,912 - +0.4 311,982 + -0.3 311,983 - +0.0 311,990 + +1.2 311,990 + -1.1 311,990 + -1.2 311,990 + -0.6 311,990 + -0.8 311,991 - -0.2 311,991 - +0.5 311,991 - -1.3 311,991 - -0.9 311,991 - -1.2 311,991 - -0.5 312,008 + +0.1 312,008 + -0.5 312,009 - -3.2 312,009 - +0.8 312,014 + +2.0 312,014 + +0.9 312,014 + +0.4 312,015 - -0.4 312,015 - -0.8 312,053 + -1.8 312,053 + -0.2 312,179 + Ac3H11_4064 0.11 -0.4 312,179 + Ac3H11_4064 0.11 +1.3 312,180 - Ac3H11_4064 0.11 -0.4 312,281 + Ac3H11_4064 0.18 -1.3 312,282 - Ac3H11_4064 0.18 +0.1 312,282 - Ac3H11_4064 0.18 -1.2 312,375 - Ac3H11_4064 0.24 +0.3 312,375 - Ac3H11_4064 0.24 +1.4 312,375 - Ac3H11_4064 0.24 +0.3 312,635 + Ac3H11_4064 0.41 -1.1 312,636 - Ac3H11_4064 0.41 +0.1 312,636 - Ac3H11_4064 0.41 -0.0 312,643 + Ac3H11_4064 0.42 -0.9 312,643 + Ac3H11_4064 0.42 -0.8 312,643 + Ac3H11_4064 0.42 +0.1 312,643 + Ac3H11_4064 0.42 +0.1 312,644 - Ac3H11_4064 0.42 +0.7 312,644 - Ac3H11_4064 0.42 -1.0 312,692 + Ac3H11_4064 0.45 +0.1 312,692 + Ac3H11_4064 0.45 +2.0 312,693 - Ac3H11_4064 0.45 -0.5 312,693 - Ac3H11_4064 0.45 +1.5 312,829 + Ac3H11_4064 0.54 +0.7 312,829 + Ac3H11_4064 0.54 +0.2 312,830 - Ac3H11_4064 0.54 -2.0 312,830 - Ac3H11_4064 0.54 -0.3 312,830 - Ac3H11_4064 0.54 -0.5 312,830 - Ac3H11_4064 0.54 -0.5 312,900 - Ac3H11_4064 0.59 -1.8 312,900 - Ac3H11_4064 0.59 +0.6 312,900 - Ac3H11_4064 0.59 +1.0 312,900 - Ac3H11_4064 0.59 -0.0 312,905 + Ac3H11_4064 0.59 -1.6 312,905 + Ac3H11_4064 0.59 -1.6 312,905 + Ac3H11_4064 0.59 -0.4 312,905 + Ac3H11_4064 0.59 -1.2 312,905 + Ac3H11_4064 0.59 +0.3 312,906 - Ac3H11_4064 0.59 +0.0 312,906 - Ac3H11_4064 0.59 -0.8 312,938 + Ac3H11_4064 0.61 -1.8 312,938 + Ac3H11_4064 0.61 +0.2 312,938 + Ac3H11_4064 0.61 -0.8 312,939 - Ac3H11_4064 0.61 +0.5 312,983 + Ac3H11_4064 0.64 -1.5 312,983 + Ac3H11_4064 0.64 -0.1 312,983 + Ac3H11_4064 0.64 +0.7 312,983 + Ac3H11_4064 0.64 +1.2 312,984 - Ac3H11_4064 0.64 +0.5 312,984 - Ac3H11_4064 0.64 -0.1 312,984 - Ac3H11_4064 0.64 -0.8 312,984 - Ac3H11_4064 0.64 +0.4 312,984 - Ac3H11_4064 0.64 +0.3 313,001 - Ac3H11_4064 0.65 +0.2 313,058 + Ac3H11_4064 0.69 -0.9 313,058 + Ac3H11_4064 0.69 -2.0 313,058 + Ac3H11_4064 0.69 -0.2 313,058 + Ac3H11_4064 0.69 -1.2 313,059 - Ac3H11_4064 0.69 +0.5 313,059 - Ac3H11_4064 0.69 +2.3 313,059 - Ac3H11_4064 0.69 -0.6 313,131 - Ac3H11_4064 0.74 -0.3 313,131 - Ac3H11_4064 0.74 -1.0 313,131 - Ac3H11_4064 0.74 -1.3 313,245 - Ac3H11_4064 0.81 -1.0 313,245 - Ac3H11_4064 0.81 -0.3 313,271 + Ac3H11_4064 0.83 -3.2 313,271 + Ac3H11_4064 0.83 +1.1 313,271 + Ac3H11_4064 0.83 -0.3 313,272 - Ac3H11_4064 0.83 -2.0 313,272 - Ac3H11_4064 0.83 -0.5 313,329 - Ac3H11_4064 0.87 -0.4 313,329 - Ac3H11_4064 0.87 -0.9 313,349 + Ac3H11_4064 0.88 +1.2 313,349 + Ac3H11_4064 0.88 -1.8 313,350 - Ac3H11_4064 0.88 -0.4 313,350 - Ac3H11_4064 0.88 +0.8 313,350 - Ac3H11_4064 0.88 -0.0 313,350 - Ac3H11_4064 0.88 +0.3 313,436 + -0.7 313,436 + -1.2 313,618 + -0.8 313,618 + +0.7 313,618 + +0.5 313,618 + +0.1 313,618 + -1.0 313,618 + -0.9 313,619 - +0.2 313,619 - +1.1 313,619 - -0.1 313,619 - +1.0 313,619 - +0.0 313,619 - -0.3 313,653 + +0.3 313,653 + +0.4 313,653 + +2.1 313,653 + -0.2 313,653 + -2.1 313,653 + +1.6 313,653 + +0.3 313,654 - +0.7 313,654 - -0.2 313,654 - +2.0 313,762 + -1.6 314,020 + Ac3H11_4065 0.15 +0.2 314,020 + Ac3H11_4065 0.15 -2.0 314,020 + Ac3H11_4065 0.15 -1.8 314,021 - Ac3H11_4065 0.15 -0.5 314,102 - Ac3H11_4065 0.23 +1.0 314,102 - Ac3H11_4065 0.23 -1.0 314,102 - Ac3H11_4065 0.23 +0.5 314,311 + Ac3H11_4065 0.43 +0.4 314,312 - Ac3H11_4065 0.43 +0.7 314,312 - Ac3H11_4065 0.43 -0.1 314,312 - Ac3H11_4065 0.43 -0.1 314,407 + Ac3H11_4065 0.53 +0.3 314,407 + Ac3H11_4065 0.53 -1.1 314,407 + Ac3H11_4065 0.53 +0.9 314,407 + Ac3H11_4065 0.53 +0.6 314,407 + Ac3H11_4065 0.53 +0.6 314,407 + Ac3H11_4065 0.53 -0.5 314,407 + Ac3H11_4065 0.53 -0.1 314,408 - Ac3H11_4065 0.53 +0.4 314,491 + Ac3H11_4065 0.61 -2.1 314,491 + Ac3H11_4065 0.61 +1.4 314,491 + Ac3H11_4065 0.61 +0.8 314,492 - Ac3H11_4065 0.61 -0.0 314,492 - Ac3H11_4065 0.61 +1.1 314,492 - Ac3H11_4065 0.61 -0.7 314,492 - Ac3H11_4065 0.61 -1.5 314,492 - Ac3H11_4065 0.61 +0.9
Or see this region's nucleotide sequence