Experiment: nitrite 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3957 and Ac3H11_3958 are separated by 64 nucleotides Ac3H11_3958 and Ac3H11_3959 are separated by 44 nucleotides Ac3H11_3959 and Ac3H11_3960 are separated by 149 nucleotides
Ac3H11_3957 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 181,639 to 182,628
_3957
Ac3H11_3958 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 182,693 to 183,592
_3958
Ac3H11_3959 - Predicted D-glucarate or D-galactorate regulator, GntR family, at 183,637 to 184,365
_3959
Ac3H11_3960 - hypothetical protein, at 184,515 to 184,664
_3960
Ac3H11_3961 - Aldehyde dehydrogenase B (EC 1.2.1.22), at 184,560 to 186,098
_3961
Position (kb) 182
183
184 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 181.718 kb on + strand at 181.718 kb on + strand at 181.719 kb on - strand at 181.778 kb on + strand, within Ac3H11_3957 at 181.778 kb on + strand, within Ac3H11_3957 at 181.778 kb on + strand, within Ac3H11_3957 at 181.934 kb on + strand, within Ac3H11_3957 at 181.934 kb on + strand, within Ac3H11_3957 at 182.159 kb on + strand, within Ac3H11_3957 at 182.160 kb on - strand, within Ac3H11_3957 at 182.160 kb on - strand, within Ac3H11_3957 at 182.271 kb on + strand, within Ac3H11_3957 at 182.271 kb on + strand, within Ac3H11_3957 at 182.271 kb on + strand, within Ac3H11_3957 at 182.271 kb on + strand, within Ac3H11_3957 at 182.271 kb on + strand, within Ac3H11_3957 at 182.271 kb on + strand, within Ac3H11_3957 at 182.272 kb on - strand, within Ac3H11_3957 at 182.272 kb on - strand, within Ac3H11_3957 at 182.272 kb on - strand, within Ac3H11_3957 at 182.272 kb on - strand, within Ac3H11_3957 at 182.734 kb on - strand at 182.734 kb on - strand at 182.734 kb on - strand at 182.734 kb on - strand at 182.880 kb on + strand, within Ac3H11_3958 at 182.881 kb on - strand, within Ac3H11_3958 at 182.881 kb on - strand, within Ac3H11_3958 at 182.881 kb on - strand, within Ac3H11_3958 at 182.881 kb on - strand, within Ac3H11_3958 at 182.881 kb on - strand, within Ac3H11_3958 at 182.946 kb on + strand, within Ac3H11_3958 at 182.946 kb on + strand, within Ac3H11_3958 at 182.946 kb on + strand, within Ac3H11_3958 at 182.947 kb on - strand, within Ac3H11_3958 at 182.947 kb on - strand, within Ac3H11_3958 at 182.947 kb on - strand, within Ac3H11_3958 at 182.960 kb on - strand, within Ac3H11_3958 at 183.042 kb on + strand, within Ac3H11_3958 at 183.084 kb on + strand, within Ac3H11_3958 at 183.207 kb on + strand, within Ac3H11_3958 at 183.207 kb on + strand, within Ac3H11_3958 at 183.207 kb on + strand, within Ac3H11_3958 at 183.207 kb on + strand, within Ac3H11_3958 at 183.216 kb on + strand, within Ac3H11_3958 at 183.217 kb on - strand, within Ac3H11_3958 at 183.414 kb on + strand, within Ac3H11_3958 at 183.415 kb on - strand, within Ac3H11_3958 at 183.539 kb on + strand at 183.539 kb on + strand at 183.595 kb on + strand at 183.595 kb on + strand at 183.595 kb on + strand at 183.596 kb on - strand at 183.954 kb on + strand, within Ac3H11_3959 at 183.954 kb on + strand, within Ac3H11_3959 at 184.222 kb on + strand, within Ac3H11_3959 at 184.222 kb on + strand, within Ac3H11_3959 at 184.223 kb on - strand, within Ac3H11_3959 at 184.258 kb on + strand, within Ac3H11_3959 at 184.258 kb on + strand, within Ac3H11_3959 at 184.258 kb on + strand, within Ac3H11_3959 at 184.258 kb on + strand, within Ac3H11_3959 at 184.259 kb on - strand, within Ac3H11_3959 at 184.259 kb on - strand, within Ac3H11_3959 at 184.460 kb on + strand at 184.460 kb on + strand at 184.460 kb on + strand at 184.460 kb on + strand at 184.460 kb on + strand at 184.461 kb on - strand at 184.465 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 10 mM remove 181,718 + -0.9 181,718 + -0.2 181,719 - +0.8 181,778 + Ac3H11_3957 0.14 -0.7 181,778 + Ac3H11_3957 0.14 +0.1 181,778 + Ac3H11_3957 0.14 -0.9 181,934 + Ac3H11_3957 0.30 +0.2 181,934 + Ac3H11_3957 0.30 -0.3 182,159 + Ac3H11_3957 0.53 -0.4 182,160 - Ac3H11_3957 0.53 +2.7 182,160 - Ac3H11_3957 0.53 -0.6 182,271 + Ac3H11_3957 0.64 +0.0 182,271 + Ac3H11_3957 0.64 -0.7 182,271 + Ac3H11_3957 0.64 -0.9 182,271 + Ac3H11_3957 0.64 +0.9 182,271 + Ac3H11_3957 0.64 +2.0 182,271 + Ac3H11_3957 0.64 -0.1 182,272 - Ac3H11_3957 0.64 -0.5 182,272 - Ac3H11_3957 0.64 -0.5 182,272 - Ac3H11_3957 0.64 -0.2 182,272 - Ac3H11_3957 0.64 +1.4 182,734 - -1.4 182,734 - -1.7 182,734 - +1.1 182,734 - +0.6 182,880 + Ac3H11_3958 0.21 -0.5 182,881 - Ac3H11_3958 0.21 +1.3 182,881 - Ac3H11_3958 0.21 +0.0 182,881 - Ac3H11_3958 0.21 -1.1 182,881 - Ac3H11_3958 0.21 -0.1 182,881 - Ac3H11_3958 0.21 -0.1 182,946 + Ac3H11_3958 0.28 -1.0 182,946 + Ac3H11_3958 0.28 -1.1 182,946 + Ac3H11_3958 0.28 -0.7 182,947 - Ac3H11_3958 0.28 +0.8 182,947 - Ac3H11_3958 0.28 -3.3 182,947 - Ac3H11_3958 0.28 -1.0 182,960 - Ac3H11_3958 0.30 -0.7 183,042 + Ac3H11_3958 0.39 +0.5 183,084 + Ac3H11_3958 0.43 -1.3 183,207 + Ac3H11_3958 0.57 +0.4 183,207 + Ac3H11_3958 0.57 -0.9 183,207 + Ac3H11_3958 0.57 -1.7 183,207 + Ac3H11_3958 0.57 -1.1 183,216 + Ac3H11_3958 0.58 -2.0 183,217 - Ac3H11_3958 0.58 -0.1 183,414 + Ac3H11_3958 0.80 +0.5 183,415 - Ac3H11_3958 0.80 -0.7 183,539 + -1.3 183,539 + +1.0 183,595 + +0.1 183,595 + -0.7 183,595 + -2.3 183,596 - +0.5 183,954 + Ac3H11_3959 0.43 -0.5 183,954 + Ac3H11_3959 0.43 -1.3 184,222 + Ac3H11_3959 0.80 -0.4 184,222 + Ac3H11_3959 0.80 -1.7 184,223 - Ac3H11_3959 0.80 -1.5 184,258 + Ac3H11_3959 0.85 -3.0 184,258 + Ac3H11_3959 0.85 -0.5 184,258 + Ac3H11_3959 0.85 -2.1 184,258 + Ac3H11_3959 0.85 -0.7 184,259 - Ac3H11_3959 0.85 -2.3 184,259 - Ac3H11_3959 0.85 -1.7 184,460 + -1.4 184,460 + -1.2 184,460 + -0.7 184,460 + +0.6 184,460 + +0.6 184,461 - +0.2 184,465 - +0.1
Or see this region's nucleotide sequence