Experiment: nitrite 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3955 and Ac3H11_3956 are separated by 2 nucleotides Ac3H11_3956 and Ac3H11_3957 are separated by 88 nucleotides
Ac3H11_3955 - TRAP-type C4-dicarboxylate transport system, large permease component, at 179,746 to 181,029
_3955
Ac3H11_3956 - TRAP-type C4-dicarboxylate transport system, small permease component, at 181,032 to 181,550
_3956
Ac3H11_3957 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 181,639 to 182,628
_3957
Position (kb) 181
182 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 180.089 kb on + strand, within Ac3H11_3955 at 180.089 kb on + strand, within Ac3H11_3955 at 180.089 kb on + strand, within Ac3H11_3955 at 180.089 kb on + strand, within Ac3H11_3955 at 180.089 kb on + strand, within Ac3H11_3955 at 180.158 kb on + strand, within Ac3H11_3955 at 180.159 kb on - strand, within Ac3H11_3955 at 180.251 kb on + strand, within Ac3H11_3955 at 180.261 kb on - strand, within Ac3H11_3955 at 180.558 kb on - strand, within Ac3H11_3955 at 180.966 kb on - strand at 181.016 kb on - strand at 181.023 kb on + strand at 181.023 kb on + strand at 181.024 kb on - strand at 181.150 kb on + strand, within Ac3H11_3956 at 181.150 kb on + strand, within Ac3H11_3956 at 181.150 kb on + strand, within Ac3H11_3956 at 181.150 kb on + strand, within Ac3H11_3956 at 181.151 kb on - strand, within Ac3H11_3956 at 181.151 kb on - strand, within Ac3H11_3956 at 181.151 kb on - strand, within Ac3H11_3956 at 181.151 kb on - strand, within Ac3H11_3956 at 181.514 kb on - strand at 181.550 kb on + strand at 181.550 kb on + strand at 181.551 kb on - strand at 181.551 kb on - strand at 181.640 kb on + strand at 181.640 kb on + strand at 181.640 kb on + strand at 181.640 kb on + strand at 181.640 kb on + strand at 181.640 kb on + strand at 181.641 kb on - strand at 181.641 kb on - strand at 181.676 kb on + strand at 181.676 kb on + strand at 181.676 kb on + strand at 181.677 kb on - strand at 181.718 kb on + strand at 181.718 kb on + strand at 181.719 kb on - strand at 181.778 kb on + strand, within Ac3H11_3957 at 181.778 kb on + strand, within Ac3H11_3957 at 181.778 kb on + strand, within Ac3H11_3957 at 181.934 kb on + strand, within Ac3H11_3957 at 181.934 kb on + strand, within Ac3H11_3957 at 182.159 kb on + strand, within Ac3H11_3957 at 182.160 kb on - strand, within Ac3H11_3957 at 182.160 kb on - strand, within Ac3H11_3957 at 182.271 kb on + strand, within Ac3H11_3957 at 182.271 kb on + strand, within Ac3H11_3957 at 182.271 kb on + strand, within Ac3H11_3957 at 182.271 kb on + strand, within Ac3H11_3957 at 182.271 kb on + strand, within Ac3H11_3957 at 182.271 kb on + strand, within Ac3H11_3957 at 182.272 kb on - strand, within Ac3H11_3957 at 182.272 kb on - strand, within Ac3H11_3957 at 182.272 kb on - strand, within Ac3H11_3957 at 182.272 kb on - strand, within Ac3H11_3957
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 10 mM remove 180,089 + Ac3H11_3955 0.27 -0.9 180,089 + Ac3H11_3955 0.27 -1.2 180,089 + Ac3H11_3955 0.27 +1.3 180,089 + Ac3H11_3955 0.27 -0.2 180,089 + Ac3H11_3955 0.27 +1.2 180,158 + Ac3H11_3955 0.32 -0.5 180,159 - Ac3H11_3955 0.32 +0.3 180,251 + Ac3H11_3955 0.39 +1.1 180,261 - Ac3H11_3955 0.40 -0.9 180,558 - Ac3H11_3955 0.63 +1.2 180,966 - -0.4 181,016 - -1.1 181,023 + -0.8 181,023 + -1.0 181,024 - +0.6 181,150 + Ac3H11_3956 0.23 +0.5 181,150 + Ac3H11_3956 0.23 +0.2 181,150 + Ac3H11_3956 0.23 -0.5 181,150 + Ac3H11_3956 0.23 -1.2 181,151 - Ac3H11_3956 0.23 -0.8 181,151 - Ac3H11_3956 0.23 -0.5 181,151 - Ac3H11_3956 0.23 +0.7 181,151 - Ac3H11_3956 0.23 -0.4 181,514 - -2.8 181,550 + +0.2 181,550 + +1.9 181,551 - -1.4 181,551 - +0.1 181,640 + +0.6 181,640 + -0.4 181,640 + -0.1 181,640 + -0.3 181,640 + -2.3 181,640 + +1.2 181,641 - +0.3 181,641 - -0.2 181,676 + -2.3 181,676 + +1.2 181,676 + -0.6 181,677 - +0.3 181,718 + -0.9 181,718 + -0.2 181,719 - +0.8 181,778 + Ac3H11_3957 0.14 -0.7 181,778 + Ac3H11_3957 0.14 +0.1 181,778 + Ac3H11_3957 0.14 -0.9 181,934 + Ac3H11_3957 0.30 +0.2 181,934 + Ac3H11_3957 0.30 -0.3 182,159 + Ac3H11_3957 0.53 -0.4 182,160 - Ac3H11_3957 0.53 +2.7 182,160 - Ac3H11_3957 0.53 -0.6 182,271 + Ac3H11_3957 0.64 +0.0 182,271 + Ac3H11_3957 0.64 -0.7 182,271 + Ac3H11_3957 0.64 -0.9 182,271 + Ac3H11_3957 0.64 +0.9 182,271 + Ac3H11_3957 0.64 +2.0 182,271 + Ac3H11_3957 0.64 -0.1 182,272 - Ac3H11_3957 0.64 -0.5 182,272 - Ac3H11_3957 0.64 -0.5 182,272 - Ac3H11_3957 0.64 -0.2 182,272 - Ac3H11_3957 0.64 +1.4
Or see this region's nucleotide sequence