Experiment: nitrite 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3401 and Ac3H11_3402 are separated by 36 nucleotides Ac3H11_3402 and Ac3H11_3403 are separated by 43 nucleotides Ac3H11_3403 and Ac3H11_3404 are separated by 225 nucleotides
Ac3H11_3401 - Ammonium transporter, at 78,686 to 80,224
_3401
Ac3H11_3402 - Nitrogen regulatory protein P-II, at 80,261 to 80,599
_3402
Ac3H11_3403 - Probable signal peptide protein, at 80,643 to 81,374
_3403
Ac3H11_3404 - MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein, at 81,600 to 83,144
_3404
Position (kb) 80
81
82 Strain fitness (log2 ratio) -2
-1
0
1
2 at 79.670 kb on - strand, within Ac3H11_3401 at 79.839 kb on + strand, within Ac3H11_3401 at 79.845 kb on + strand, within Ac3H11_3401 at 79.845 kb on + strand, within Ac3H11_3401 at 79.845 kb on + strand, within Ac3H11_3401 at 79.846 kb on - strand, within Ac3H11_3401 at 79.846 kb on - strand, within Ac3H11_3401 at 79.846 kb on - strand, within Ac3H11_3401 at 79.935 kb on + strand, within Ac3H11_3401 at 79.936 kb on - strand, within Ac3H11_3401 at 80.262 kb on + strand at 80.262 kb on + strand at 80.262 kb on + strand at 80.263 kb on - strand at 80.444 kb on + strand, within Ac3H11_3402 at 80.445 kb on - strand, within Ac3H11_3402 at 80.445 kb on - strand, within Ac3H11_3402 at 80.445 kb on - strand, within Ac3H11_3402 at 80.448 kb on + strand, within Ac3H11_3402 at 80.448 kb on + strand, within Ac3H11_3402 at 80.448 kb on + strand, within Ac3H11_3402 at 80.448 kb on + strand, within Ac3H11_3402 at 80.449 kb on - strand, within Ac3H11_3402 at 80.449 kb on - strand, within Ac3H11_3402 at 80.449 kb on - strand, within Ac3H11_3402 at 80.449 kb on - strand, within Ac3H11_3402 at 80.449 kb on - strand, within Ac3H11_3402 at 80.449 kb on - strand, within Ac3H11_3402 at 80.449 kb on - strand, within Ac3H11_3402 at 80.464 kb on - strand, within Ac3H11_3402 at 80.464 kb on - strand, within Ac3H11_3402 at 80.758 kb on + strand, within Ac3H11_3403 at 80.758 kb on + strand, within Ac3H11_3403 at 80.758 kb on + strand, within Ac3H11_3403 at 80.759 kb on - strand, within Ac3H11_3403 at 80.776 kb on + strand, within Ac3H11_3403 at 80.776 kb on + strand, within Ac3H11_3403 at 80.776 kb on + strand, within Ac3H11_3403 at 80.776 kb on + strand, within Ac3H11_3403 at 80.776 kb on - strand, within Ac3H11_3403 at 80.777 kb on - strand, within Ac3H11_3403 at 80.777 kb on - strand, within Ac3H11_3403 at 80.785 kb on + strand, within Ac3H11_3403 at 80.785 kb on + strand, within Ac3H11_3403 at 80.785 kb on + strand, within Ac3H11_3403 at 80.785 kb on + strand, within Ac3H11_3403 at 80.785 kb on + strand, within Ac3H11_3403 at 80.785 kb on + strand, within Ac3H11_3403 at 80.785 kb on + strand, within Ac3H11_3403 at 80.786 kb on - strand, within Ac3H11_3403 at 80.786 kb on - strand at 80.786 kb on - strand, within Ac3H11_3403 at 80.786 kb on - strand, within Ac3H11_3403 at 80.786 kb on - strand, within Ac3H11_3403 at 80.786 kb on - strand, within Ac3H11_3403 at 80.786 kb on - strand, within Ac3H11_3403 at 80.951 kb on - strand, within Ac3H11_3403 at 81.109 kb on + strand, within Ac3H11_3403 at 81.109 kb on + strand, within Ac3H11_3403 at 81.173 kb on - strand, within Ac3H11_3403 at 81.196 kb on + strand, within Ac3H11_3403 at 81.397 kb on - strand at 81.412 kb on - strand at 81.412 kb on - strand at 81.479 kb on - strand at 81.493 kb on + strand at 81.493 kb on + strand at 81.493 kb on + strand at 81.493 kb on + strand at 81.494 kb on - strand at 81.494 kb on - strand at 81.797 kb on + strand, within Ac3H11_3404 at 81.798 kb on - strand, within Ac3H11_3404
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 10 mM remove 79,670 - Ac3H11_3401 0.64 -0.9 79,839 + Ac3H11_3401 0.75 -0.9 79,845 + Ac3H11_3401 0.75 +1.0 79,845 + Ac3H11_3401 0.75 +0.3 79,845 + Ac3H11_3401 0.75 -1.7 79,846 - Ac3H11_3401 0.75 -1.1 79,846 - Ac3H11_3401 0.75 +0.2 79,846 - Ac3H11_3401 0.75 -0.3 79,935 + Ac3H11_3401 0.81 -0.6 79,936 - Ac3H11_3401 0.81 -0.5 80,262 + -0.1 80,262 + -0.4 80,262 + +0.4 80,263 - +0.9 80,444 + Ac3H11_3402 0.54 -0.5 80,445 - Ac3H11_3402 0.54 +0.7 80,445 - Ac3H11_3402 0.54 +0.0 80,445 - Ac3H11_3402 0.54 -1.0 80,448 + Ac3H11_3402 0.55 +1.8 80,448 + Ac3H11_3402 0.55 -1.4 80,448 + Ac3H11_3402 0.55 +0.4 80,448 + Ac3H11_3402 0.55 +0.1 80,449 - Ac3H11_3402 0.55 -0.5 80,449 - Ac3H11_3402 0.55 +1.0 80,449 - Ac3H11_3402 0.55 -1.0 80,449 - Ac3H11_3402 0.55 -2.3 80,449 - Ac3H11_3402 0.55 +0.7 80,449 - Ac3H11_3402 0.55 -2.3 80,449 - Ac3H11_3402 0.55 +1.9 80,464 - Ac3H11_3402 0.60 -0.3 80,464 - Ac3H11_3402 0.60 -2.4 80,758 + Ac3H11_3403 0.16 +1.4 80,758 + Ac3H11_3403 0.16 -0.5 80,758 + Ac3H11_3403 0.16 -0.5 80,759 - Ac3H11_3403 0.16 +0.2 80,776 + Ac3H11_3403 0.18 -1.5 80,776 + Ac3H11_3403 0.18 +0.9 80,776 + Ac3H11_3403 0.18 -0.5 80,776 + Ac3H11_3403 0.18 -0.3 80,776 - Ac3H11_3403 0.18 -0.0 80,777 - Ac3H11_3403 0.18 -0.9 80,777 - Ac3H11_3403 0.18 +0.9 80,785 + Ac3H11_3403 0.19 -0.2 80,785 + Ac3H11_3403 0.19 +0.6 80,785 + Ac3H11_3403 0.19 +0.0 80,785 + Ac3H11_3403 0.19 -1.3 80,785 + Ac3H11_3403 0.19 -2.2 80,785 + Ac3H11_3403 0.19 +0.6 80,785 + Ac3H11_3403 0.19 -0.1 80,786 - Ac3H11_3403 0.20 -0.8 80,786 - +0.4 80,786 - Ac3H11_3403 0.20 -0.5 80,786 - Ac3H11_3403 0.20 +0.5 80,786 - Ac3H11_3403 0.20 +0.4 80,786 - Ac3H11_3403 0.20 -0.3 80,786 - Ac3H11_3403 0.20 -0.7 80,951 - Ac3H11_3403 0.42 +0.3 81,109 + Ac3H11_3403 0.64 -0.9 81,109 + Ac3H11_3403 0.64 +2.0 81,173 - Ac3H11_3403 0.72 -0.1 81,196 + Ac3H11_3403 0.76 +0.4 81,397 - -1.4 81,412 - -1.3 81,412 - -0.8 81,479 - -2.2 81,493 + +0.8 81,493 + +0.8 81,493 + +0.8 81,493 + +2.0 81,494 - +0.1 81,494 - -0.7 81,797 + Ac3H11_3404 0.13 -1.7 81,798 - Ac3H11_3404 0.13 -1.1
Or see this region's nucleotide sequence