Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2732

Experiment: nitrite 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2730 and Ac3H11_2731 are separated by 259 nucleotidesAc3H11_2731 and Ac3H11_2732 overlap by 4 nucleotidesAc3H11_2732 and Ac3H11_2733 are separated by 55 nucleotides Ac3H11_2730 - hypothetical protein, at 1,032,084 to 1,032,266 _2730 Ac3H11_2731 - hypothetical protein, at 1,032,526 to 1,032,951 _2731 Ac3H11_2732 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 1,032,948 to 1,033,784 _2732 Ac3H11_2733 - MFS transporter, at 1,033,840 to 1,035,060 _2733 Position (kb) 1032 1033 1034Strain fitness (log2 ratio) -2 -1 0 1at 1032.026 kb on - strandat 1032.037 kb on - strandat 1032.037 kb on - strandat 1032.037 kb on - strandat 1032.211 kb on + strand, within Ac3H11_2730at 1032.211 kb on + strand, within Ac3H11_2730at 1032.213 kb on + strand, within Ac3H11_2730at 1032.418 kb on + strandat 1032.517 kb on + strandat 1032.656 kb on - strand, within Ac3H11_2731at 1032.706 kb on + strand, within Ac3H11_2731at 1032.706 kb on + strand, within Ac3H11_2731at 1032.706 kb on - strand, within Ac3H11_2731at 1032.707 kb on - strand, within Ac3H11_2731at 1032.707 kb on - strand, within Ac3H11_2731at 1032.833 kb on - strand, within Ac3H11_2731at 1032.866 kb on - strand, within Ac3H11_2731at 1033.232 kb on + strand, within Ac3H11_2732at 1033.232 kb on + strand, within Ac3H11_2732at 1033.232 kb on + strand, within Ac3H11_2732at 1033.356 kb on + strand, within Ac3H11_2732at 1033.357 kb on - strand, within Ac3H11_2732at 1033.450 kb on - strand, within Ac3H11_2732at 1033.450 kb on - strand, within Ac3H11_2732at 1033.594 kb on + strand, within Ac3H11_2732at 1033.594 kb on + strand, within Ac3H11_2732at 1033.595 kb on - strand, within Ac3H11_2732at 1033.595 kb on - strand, within Ac3H11_2732at 1033.683 kb on + strand, within Ac3H11_2732at 1033.701 kb on + strandat 1033.701 kb on + strandat 1033.701 kb on + strandat 1033.701 kb on + strandat 1033.701 kb on + strandat 1033.702 kb on - strandat 1033.949 kb on + strandat 1034.007 kb on - strand, within Ac3H11_2733at 1034.396 kb on + strand, within Ac3H11_2733at 1034.409 kb on - strand, within Ac3H11_2733at 1034.620 kb on + strand, within Ac3H11_2733at 1034.621 kb on - strand, within Ac3H11_2733at 1034.621 kb on - strand, within Ac3H11_2733at 1034.621 kb on - strand, within Ac3H11_2733

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 10 mM
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1,032,026 - +1.1
1,032,037 - +1.2
1,032,037 - -1.5
1,032,037 - +0.1
1,032,211 + Ac3H11_2730 0.69 +0.3
1,032,211 + Ac3H11_2730 0.69 +0.3
1,032,213 + Ac3H11_2730 0.70 -1.0
1,032,418 + -1.0
1,032,517 + -0.7
1,032,656 - Ac3H11_2731 0.31 -0.3
1,032,706 + Ac3H11_2731 0.42 -0.9
1,032,706 + Ac3H11_2731 0.42 -0.1
1,032,706 - Ac3H11_2731 0.42 -2.4
1,032,707 - Ac3H11_2731 0.42 +0.2
1,032,707 - Ac3H11_2731 0.42 -0.7
1,032,833 - Ac3H11_2731 0.72 -0.6
1,032,866 - Ac3H11_2731 0.80 -0.5
1,033,232 + Ac3H11_2732 0.34 -1.7
1,033,232 + Ac3H11_2732 0.34 -1.6
1,033,232 + Ac3H11_2732 0.34 -1.3
1,033,356 + Ac3H11_2732 0.49 -1.0
1,033,357 - Ac3H11_2732 0.49 +1.3
1,033,450 - Ac3H11_2732 0.60 -0.1
1,033,450 - Ac3H11_2732 0.60 +1.7
1,033,594 + Ac3H11_2732 0.77 +0.7
1,033,594 + Ac3H11_2732 0.77 +0.5
1,033,595 - Ac3H11_2732 0.77 +0.6
1,033,595 - Ac3H11_2732 0.77 +1.0
1,033,683 + Ac3H11_2732 0.88 +0.3
1,033,701 + +0.7
1,033,701 + -1.3
1,033,701 + -0.1
1,033,701 + -1.5
1,033,701 + -0.8
1,033,702 - -0.1
1,033,949 + -0.5
1,034,007 - Ac3H11_2733 0.14 +0.1
1,034,396 + Ac3H11_2733 0.46 -0.6
1,034,409 - Ac3H11_2733 0.47 -1.1
1,034,620 + Ac3H11_2733 0.64 -0.1
1,034,621 - Ac3H11_2733 0.64 +0.0
1,034,621 - Ac3H11_2733 0.64 +0.8
1,034,621 - Ac3H11_2733 0.64 +1.6

Or see this region's nucleotide sequence