Experiment: nitrite 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1684 and Ac3H11_1685 are separated by 33 nucleotides Ac3H11_1685 and Ac3H11_1686 are separated by 76 nucleotides Ac3H11_1686 and Ac3H11_1687 are separated by 263 nucleotides Ac3H11_1687 and Ac3H11_1688 are separated by 13 nucleotides
Ac3H11_1684 - tRNA (Guanine37-N1) -methyltransferase (EC 2.1.1.31), at 286,940 to 287,698
_1684
Ac3H11_1685 - 16S rRNA processing protein RimM, at 287,732 to 288,304
_1685
Ac3H11_1686 - SSU ribosomal protein S16p, at 288,381 to 288,632
_1686
Ac3H11_1687 - Phosphinothricin N-acetyltransferase, at 288,896 to 289,300
_1687
Ac3H11_1688 - Probable transmembrane protein, at 289,314 to 289,760
_1688
Position (kb) 288
289 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 287.736 kb on + strand at 287.736 kb on + strand at 287.737 kb on - strand at 287.737 kb on - strand at 287.737 kb on - strand at 287.737 kb on - strand at 288.763 kb on - strand at 288.763 kb on - strand at 288.763 kb on - strand at 288.763 kb on - strand at 288.824 kb on - strand at 288.834 kb on - strand at 288.834 kb on - strand at 288.834 kb on - strand at 288.834 kb on - strand at 288.834 kb on - strand at 288.834 kb on - strand at 288.980 kb on + strand, within Ac3H11_1687 at 288.981 kb on - strand, within Ac3H11_1687 at 288.981 kb on - strand, within Ac3H11_1687 at 289.010 kb on + strand, within Ac3H11_1687 at 289.011 kb on - strand, within Ac3H11_1687 at 289.037 kb on + strand, within Ac3H11_1687 at 289.037 kb on + strand, within Ac3H11_1687 at 289.037 kb on + strand, within Ac3H11_1687 at 289.037 kb on + strand, within Ac3H11_1687 at 289.037 kb on + strand, within Ac3H11_1687 at 289.037 kb on + strand, within Ac3H11_1687 at 289.037 kb on + strand, within Ac3H11_1687 at 289.037 kb on + strand, within Ac3H11_1687 at 289.038 kb on - strand, within Ac3H11_1687 at 289.038 kb on - strand, within Ac3H11_1687 at 289.038 kb on - strand, within Ac3H11_1687 at 289.038 kb on - strand, within Ac3H11_1687 at 289.038 kb on - strand, within Ac3H11_1687 at 289.038 kb on - strand, within Ac3H11_1687 at 289.038 kb on - strand, within Ac3H11_1687 at 289.165 kb on + strand, within Ac3H11_1687 at 289.165 kb on + strand, within Ac3H11_1687 at 289.165 kb on + strand, within Ac3H11_1687 at 289.166 kb on - strand, within Ac3H11_1687 at 289.166 kb on - strand, within Ac3H11_1687 at 289.166 kb on - strand, within Ac3H11_1687 at 289.166 kb on - strand, within Ac3H11_1687 at 289.166 kb on - strand, within Ac3H11_1687 at 289.166 kb on - strand, within Ac3H11_1687 at 289.192 kb on + strand, within Ac3H11_1687 at 289.251 kb on + strand, within Ac3H11_1687 at 289.251 kb on + strand, within Ac3H11_1687 at 289.251 kb on + strand, within Ac3H11_1687 at 289.251 kb on + strand, within Ac3H11_1687 at 289.251 kb on + strand, within Ac3H11_1687 at 289.251 kb on + strand, within Ac3H11_1687 at 289.252 kb on - strand, within Ac3H11_1687 at 289.252 kb on - strand, within Ac3H11_1687 at 289.252 kb on - strand, within Ac3H11_1687 at 289.252 kb on - strand, within Ac3H11_1687 at 289.252 kb on - strand, within Ac3H11_1687 at 289.252 kb on - strand, within Ac3H11_1687 at 289.252 kb on - strand, within Ac3H11_1687 at 289.252 kb on - strand, within Ac3H11_1687 at 289.380 kb on + strand, within Ac3H11_1688 at 289.380 kb on + strand, within Ac3H11_1688 at 289.381 kb on - strand, within Ac3H11_1688 at 289.381 kb on - strand, within Ac3H11_1688 at 289.443 kb on + strand, within Ac3H11_1688 at 289.443 kb on + strand, within Ac3H11_1688 at 289.444 kb on - strand, within Ac3H11_1688 at 289.444 kb on - strand, within Ac3H11_1688 at 289.444 kb on - strand, within Ac3H11_1688 at 289.444 kb on - strand, within Ac3H11_1688 at 289.444 kb on - strand, within Ac3H11_1688 at 289.587 kb on + strand, within Ac3H11_1688 at 289.587 kb on + strand, within Ac3H11_1688 at 289.588 kb on - strand, within Ac3H11_1688
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 10 mM remove 287,736 + +1.6 287,736 + +0.5 287,737 - -0.9 287,737 - -0.2 287,737 - -0.6 287,737 - +1.0 288,763 - +0.1 288,763 - -1.1 288,763 - -0.5 288,763 - -0.5 288,824 - +0.2 288,834 - -1.5 288,834 - -0.7 288,834 - -0.7 288,834 - -0.1 288,834 - -0.4 288,834 - -0.0 288,980 + Ac3H11_1687 0.21 -0.7 288,981 - Ac3H11_1687 0.21 +0.9 288,981 - Ac3H11_1687 0.21 -0.8 289,010 + Ac3H11_1687 0.28 -1.0 289,011 - Ac3H11_1687 0.28 -2.1 289,037 + Ac3H11_1687 0.35 -0.7 289,037 + Ac3H11_1687 0.35 +0.1 289,037 + Ac3H11_1687 0.35 -2.3 289,037 + Ac3H11_1687 0.35 +0.4 289,037 + Ac3H11_1687 0.35 -1.5 289,037 + Ac3H11_1687 0.35 -0.2 289,037 + Ac3H11_1687 0.35 -0.2 289,037 + Ac3H11_1687 0.35 +0.1 289,038 - Ac3H11_1687 0.35 +0.7 289,038 - Ac3H11_1687 0.35 -1.9 289,038 - Ac3H11_1687 0.35 +0.3 289,038 - Ac3H11_1687 0.35 -0.4 289,038 - Ac3H11_1687 0.35 +0.4 289,038 - Ac3H11_1687 0.35 -1.1 289,038 - Ac3H11_1687 0.35 +0.1 289,165 + Ac3H11_1687 0.66 -0.7 289,165 + Ac3H11_1687 0.66 -0.7 289,165 + Ac3H11_1687 0.66 +0.9 289,166 - Ac3H11_1687 0.67 -1.0 289,166 - Ac3H11_1687 0.67 -0.5 289,166 - Ac3H11_1687 0.67 +0.9 289,166 - Ac3H11_1687 0.67 -0.7 289,166 - Ac3H11_1687 0.67 +0.5 289,166 - Ac3H11_1687 0.67 +0.7 289,192 + Ac3H11_1687 0.73 -0.8 289,251 + Ac3H11_1687 0.88 +2.2 289,251 + Ac3H11_1687 0.88 -0.2 289,251 + Ac3H11_1687 0.88 -2.1 289,251 + Ac3H11_1687 0.88 -1.1 289,251 + Ac3H11_1687 0.88 -1.1 289,251 + Ac3H11_1687 0.88 -0.3 289,252 - Ac3H11_1687 0.88 -1.2 289,252 - Ac3H11_1687 0.88 -0.6 289,252 - Ac3H11_1687 0.88 -0.1 289,252 - Ac3H11_1687 0.88 -0.7 289,252 - Ac3H11_1687 0.88 +0.6 289,252 - Ac3H11_1687 0.88 +0.2 289,252 - Ac3H11_1687 0.88 +2.9 289,252 - Ac3H11_1687 0.88 -2.2 289,380 + Ac3H11_1688 0.15 -0.3 289,380 + Ac3H11_1688 0.15 +1.5 289,381 - Ac3H11_1688 0.15 -0.3 289,381 - Ac3H11_1688 0.15 +0.9 289,443 + Ac3H11_1688 0.29 -1.1 289,443 + Ac3H11_1688 0.29 -0.6 289,444 - Ac3H11_1688 0.29 +0.2 289,444 - Ac3H11_1688 0.29 -1.7 289,444 - Ac3H11_1688 0.29 -0.7 289,444 - Ac3H11_1688 0.29 +0.3 289,444 - Ac3H11_1688 0.29 -0.5 289,587 + Ac3H11_1688 0.61 -0.8 289,587 + Ac3H11_1688 0.61 +0.2 289,588 - Ac3H11_1688 0.61 +0.8
Or see this region's nucleotide sequence