Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1663

Experiment: nitrite 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1662 and Ac3H11_1663 are separated by 55 nucleotidesAc3H11_1663 and Ac3H11_1664 are separated by 146 nucleotides Ac3H11_1662 - GMP reductase (EC 1.7.1.7), at 257,779 to 258,756 _1662 Ac3H11_1663 - putative esterase, at 258,812 to 259,693 _1663 Ac3H11_1664 - 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), at 259,840 to 260,724 _1664 Position (kb) 258 259 260Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 257.959 kb on + strand, within Ac3H11_1662at 257.959 kb on + strand, within Ac3H11_1662at 257.965 kb on + strand, within Ac3H11_1662at 257.965 kb on + strand, within Ac3H11_1662at 257.965 kb on + strand, within Ac3H11_1662at 257.965 kb on + strand, within Ac3H11_1662at 257.965 kb on + strand, within Ac3H11_1662at 257.965 kb on + strand, within Ac3H11_1662at 257.965 kb on + strand, within Ac3H11_1662at 257.966 kb on - strand, within Ac3H11_1662at 257.966 kb on - strand, within Ac3H11_1662at 257.966 kb on - strand, within Ac3H11_1662at 258.031 kb on + strand, within Ac3H11_1662at 258.031 kb on + strand, within Ac3H11_1662at 258.031 kb on + strand, within Ac3H11_1662at 258.032 kb on - strand, within Ac3H11_1662at 258.032 kb on - strand, within Ac3H11_1662at 258.068 kb on - strand, within Ac3H11_1662at 258.112 kb on + strand, within Ac3H11_1662at 258.112 kb on + strand, within Ac3H11_1662at 258.112 kb on + strand, within Ac3H11_1662at 258.112 kb on + strand, within Ac3H11_1662at 258.112 kb on + strand, within Ac3H11_1662at 258.112 kb on + strand, within Ac3H11_1662at 258.112 kb on + strand, within Ac3H11_1662at 258.112 kb on + strand, within Ac3H11_1662at 258.112 kb on + strand, within Ac3H11_1662at 258.113 kb on - strand, within Ac3H11_1662at 258.113 kb on - strand, within Ac3H11_1662at 258.113 kb on - strand, within Ac3H11_1662at 258.113 kb on - strand, within Ac3H11_1662at 258.113 kb on - strand, within Ac3H11_1662at 258.523 kb on + strand, within Ac3H11_1662at 258.524 kb on - strand, within Ac3H11_1662at 258.524 kb on - strand, within Ac3H11_1662at 258.532 kb on + strand, within Ac3H11_1662at 258.532 kb on + strand, within Ac3H11_1662at 258.533 kb on - strand, within Ac3H11_1662at 258.533 kb on - strand, within Ac3H11_1662at 258.536 kb on - strand, within Ac3H11_1662at 258.536 kb on - strand, within Ac3H11_1662at 258.536 kb on - strand, within Ac3H11_1662at 258.568 kb on + strand, within Ac3H11_1662at 258.568 kb on + strand, within Ac3H11_1662at 258.568 kb on + strand, within Ac3H11_1662at 258.569 kb on - strand, within Ac3H11_1662at 258.569 kb on - strand, within Ac3H11_1662at 258.569 kb on - strand, within Ac3H11_1662at 258.569 kb on - strand, within Ac3H11_1662at 258.569 kb on - strand, within Ac3H11_1662at 258.569 kb on - strand, within Ac3H11_1662at 258.667 kb on + strandat 258.709 kb on + strandat 258.709 kb on + strandat 258.709 kb on + strandat 258.709 kb on + strandat 258.709 kb on + strandat 258.709 kb on + strandat 258.709 kb on + strandat 258.709 kb on + strandat 258.710 kb on - strandat 258.710 kb on - strandat 258.710 kb on - strandat 258.710 kb on - strandat 258.710 kb on - strandat 258.754 kb on + strandat 258.754 kb on + strandat 258.755 kb on - strandat 258.755 kb on - strandat 258.755 kb on - strandat 258.755 kb on - strandat 258.755 kb on - strandat 258.813 kb on + strandat 258.813 kb on + strandat 258.813 kb on + strandat 259.003 kb on - strand, within Ac3H11_1663at 259.368 kb on + strand, within Ac3H11_1663at 259.368 kb on + strand, within Ac3H11_1663at 259.368 kb on + strand, within Ac3H11_1663at 259.368 kb on + strand, within Ac3H11_1663at 259.369 kb on - strand, within Ac3H11_1663at 259.435 kb on + strand, within Ac3H11_1663at 259.435 kb on + strand, within Ac3H11_1663at 259.436 kb on - strand, within Ac3H11_1663at 259.436 kb on - strand, within Ac3H11_1663at 259.436 kb on - strand, within Ac3H11_1663at 259.452 kb on + strand, within Ac3H11_1663at 259.546 kb on - strand, within Ac3H11_1663at 259.614 kb on + strandat 259.614 kb on + strandat 259.614 kb on + strandat 259.615 kb on - strandat 259.615 kb on - strandat 259.615 kb on - strandat 259.615 kb on - strandat 259.650 kb on + strandat 259.650 kb on + strandat 259.650 kb on + strandat 259.650 kb on + strandat 259.650 kb on + strandat 259.650 kb on + strandat 259.650 kb on + strandat 259.651 kb on - strandat 259.651 kb on - strandat 259.651 kb on - strandat 259.651 kb on - strandat 259.651 kb on - strandat 259.848 kb on + strandat 259.848 kb on + strandat 259.848 kb on + strandat 259.848 kb on + strandat 259.848 kb on + strandat 259.849 kb on - strandat 259.849 kb on - strandat 259.849 kb on - strandat 259.849 kb on - strandat 259.849 kb on - strandat 259.849 kb on - strandat 259.849 kb on - strandat 259.978 kb on + strand, within Ac3H11_1664at 259.978 kb on + strand, within Ac3H11_1664at 259.979 kb on - strand, within Ac3H11_1664at 259.998 kb on + strand, within Ac3H11_1664at 259.998 kb on + strand, within Ac3H11_1664at 259.998 kb on + strand, within Ac3H11_1664at 259.998 kb on + strand, within Ac3H11_1664at 259.998 kb on + strand, within Ac3H11_1664at 259.998 kb on + strand, within Ac3H11_1664at 259.999 kb on - strand, within Ac3H11_1664at 259.999 kb on - strand, within Ac3H11_1664at 259.999 kb on - strand, within Ac3H11_1664at 259.999 kb on - strand, within Ac3H11_1664at 259.999 kb on - strand, within Ac3H11_1664at 259.999 kb on - strand, within Ac3H11_1664at 259.999 kb on - strand, within Ac3H11_1664at 260.278 kb on + strand, within Ac3H11_1664at 260.278 kb on + strand, within Ac3H11_1664at 260.278 kb on + strand, within Ac3H11_1664at 260.638 kb on + strandat 260.638 kb on + strandat 260.638 kb on + strandat 260.638 kb on + strandat 260.638 kb on + strandat 260.639 kb on - strandat 260.639 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 10 mM
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257,959 + Ac3H11_1662 0.18 -1.9
257,959 + Ac3H11_1662 0.18 -2.5
257,965 + Ac3H11_1662 0.19 -0.6
257,965 + Ac3H11_1662 0.19 +1.7
257,965 + Ac3H11_1662 0.19 -0.5
257,965 + Ac3H11_1662 0.19 +0.2
257,965 + Ac3H11_1662 0.19 -0.3
257,965 + Ac3H11_1662 0.19 +0.9
257,965 + Ac3H11_1662 0.19 -0.1
257,966 - Ac3H11_1662 0.19 +0.4
257,966 - Ac3H11_1662 0.19 +1.5
257,966 - Ac3H11_1662 0.19 +1.2
258,031 + Ac3H11_1662 0.26 -0.7
258,031 + Ac3H11_1662 0.26 -1.2
258,031 + Ac3H11_1662 0.26 -1.2
258,032 - Ac3H11_1662 0.26 -1.6
258,032 - Ac3H11_1662 0.26 -1.1
258,068 - Ac3H11_1662 0.30 +0.5
258,112 + Ac3H11_1662 0.34 -2.0
258,112 + Ac3H11_1662 0.34 -1.1
258,112 + Ac3H11_1662 0.34 +0.8
258,112 + Ac3H11_1662 0.34 +0.9
258,112 + Ac3H11_1662 0.34 +0.4
258,112 + Ac3H11_1662 0.34 -1.9
258,112 + Ac3H11_1662 0.34 +0.5
258,112 + Ac3H11_1662 0.34 +0.1
258,112 + Ac3H11_1662 0.34 -1.0
258,113 - Ac3H11_1662 0.34 +0.5
258,113 - Ac3H11_1662 0.34 -0.5
258,113 - Ac3H11_1662 0.34 -0.5
258,113 - Ac3H11_1662 0.34 -0.5
258,113 - Ac3H11_1662 0.34 +1.0
258,523 + Ac3H11_1662 0.76 +0.7
258,524 - Ac3H11_1662 0.76 +0.4
258,524 - Ac3H11_1662 0.76 -0.3
258,532 + Ac3H11_1662 0.77 +1.4
258,532 + Ac3H11_1662 0.77 -0.4
258,533 - Ac3H11_1662 0.77 -1.8
258,533 - Ac3H11_1662 0.77 -0.8
258,536 - Ac3H11_1662 0.77 -0.5
258,536 - Ac3H11_1662 0.77 -1.1
258,536 - Ac3H11_1662 0.77 +1.0
258,568 + Ac3H11_1662 0.81 +1.6
258,568 + Ac3H11_1662 0.81 +0.0
258,568 + Ac3H11_1662 0.81 -0.0
258,569 - Ac3H11_1662 0.81 +0.7
258,569 - Ac3H11_1662 0.81 -0.2
258,569 - Ac3H11_1662 0.81 -1.6
258,569 - Ac3H11_1662 0.81 +1.5
258,569 - Ac3H11_1662 0.81 -0.3
258,569 - Ac3H11_1662 0.81 +1.5
258,667 + +0.8
258,709 + -0.7
258,709 + -1.2
258,709 + -1.7
258,709 + -0.3
258,709 + +0.6
258,709 + -0.7
258,709 + -1.1
258,709 + +0.3
258,710 - +2.1
258,710 - -0.8
258,710 - -0.1
258,710 - -0.3
258,710 - +0.5
258,754 + -1.0
258,754 + -1.1
258,755 - +0.1
258,755 - -0.4
258,755 - +0.3
258,755 - +0.5
258,755 - -0.4
258,813 + -2.6
258,813 + -0.7
258,813 + -0.7
259,003 - Ac3H11_1663 0.22 +1.1
259,368 + Ac3H11_1663 0.63 -1.0
259,368 + Ac3H11_1663 0.63 +0.2
259,368 + Ac3H11_1663 0.63 +0.5
259,368 + Ac3H11_1663 0.63 -2.2
259,369 - Ac3H11_1663 0.63 -0.1
259,435 + Ac3H11_1663 0.71 -2.7
259,435 + Ac3H11_1663 0.71 +0.1
259,436 - Ac3H11_1663 0.71 -1.1
259,436 - Ac3H11_1663 0.71 -0.3
259,436 - Ac3H11_1663 0.71 +0.5
259,452 + Ac3H11_1663 0.73 +0.2
259,546 - Ac3H11_1663 0.83 +0.2
259,614 + +1.3
259,614 + -2.4
259,614 + -0.4
259,615 - -1.1
259,615 - +0.5
259,615 - -0.2
259,615 - -0.6
259,650 + -0.8
259,650 + +1.2
259,650 + +0.9
259,650 + -0.8
259,650 + -1.3
259,650 + -0.1
259,650 + +0.1
259,651 - -0.5
259,651 - +0.5
259,651 - +0.4
259,651 - +1.2
259,651 - -1.0
259,848 + -0.6
259,848 + -1.3
259,848 + -0.6
259,848 + +0.2
259,848 + +0.9
259,849 - -1.2
259,849 - -0.9
259,849 - +1.9
259,849 - -2.1
259,849 - -1.5
259,849 - -1.2
259,849 - -0.5
259,978 + Ac3H11_1664 0.16 -1.0
259,978 + Ac3H11_1664 0.16 +1.3
259,979 - Ac3H11_1664 0.16 -1.3
259,998 + Ac3H11_1664 0.18 -0.3
259,998 + Ac3H11_1664 0.18 -0.7
259,998 + Ac3H11_1664 0.18 +0.1
259,998 + Ac3H11_1664 0.18 -1.5
259,998 + Ac3H11_1664 0.18 +0.9
259,998 + Ac3H11_1664 0.18 +0.7
259,999 - Ac3H11_1664 0.18 +0.1
259,999 - Ac3H11_1664 0.18 +0.8
259,999 - Ac3H11_1664 0.18 -0.3
259,999 - Ac3H11_1664 0.18 +0.2
259,999 - Ac3H11_1664 0.18 -0.2
259,999 - Ac3H11_1664 0.18 +1.2
259,999 - Ac3H11_1664 0.18 -2.9
260,278 + Ac3H11_1664 0.49 +0.5
260,278 + Ac3H11_1664 0.49 +0.7
260,278 + Ac3H11_1664 0.49 -1.6
260,638 + +0.6
260,638 + +0.4
260,638 + +0.9
260,638 + -1.2
260,638 + +0.6
260,639 - +1.2
260,639 - -0.5

Or see this region's nucleotide sequence