Experiment: nitrite 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_937 and Ac3H11_1045 are separated by 85 nucleotides Ac3H11_1045 and Ac3H11_1046 are separated by 61 nucleotides Ac3H11_1046 and Ac3H11_1047 are separated by 181 nucleotides Ac3H11_1047 and Ac3H11_1048 are separated by 157 nucleotides Ac3H11_1048 and Ac3H11_938 are separated by 67 nucleotides
Ac3H11_937 - ATP-dependent protease La (EC 3.4.21.53) Type I, at 54,968 to 57,400
_937
Ac3H11_1045 - tRNA-Gly-GCC, at 57,486 to 57,558
_1045
Ac3H11_1046 - tRNA-Cys-GCA, at 57,620 to 57,690
_1046
Ac3H11_1047 - tRNA-Gly-GCC, at 57,872 to 57,944
_1047
Ac3H11_1048 - tRNA-Leu-TAA, at 58,102 to 58,191
_1048
Ac3H11_938 - FIG00582348: hypothetical protein, at 58,259 to 58,843
_938
Position (kb) 57
58 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 56.729 kb on + strand, within Ac3H11_937 at 56.729 kb on + strand, within Ac3H11_937 at 56.729 kb on + strand, within Ac3H11_937 at 56.729 kb on + strand, within Ac3H11_937 at 56.729 kb on + strand, within Ac3H11_937 at 56.729 kb on + strand, within Ac3H11_937 at 56.729 kb on + strand, within Ac3H11_937 at 56.729 kb on + strand, within Ac3H11_937 at 56.729 kb on + strand, within Ac3H11_937 at 56.730 kb on - strand, within Ac3H11_937 at 56.730 kb on - strand, within Ac3H11_937 at 56.730 kb on - strand, within Ac3H11_937 at 56.730 kb on - strand, within Ac3H11_937 at 56.735 kb on + strand, within Ac3H11_937 at 56.735 kb on + strand, within Ac3H11_937 at 56.735 kb on + strand, within Ac3H11_937 at 56.735 kb on + strand, within Ac3H11_937 at 56.735 kb on + strand, within Ac3H11_937 at 56.735 kb on + strand, within Ac3H11_937 at 56.735 kb on + strand, within Ac3H11_937 at 56.735 kb on + strand, within Ac3H11_937 at 56.735 kb on + strand, within Ac3H11_937 at 56.736 kb on - strand, within Ac3H11_937 at 56.736 kb on - strand, within Ac3H11_937 at 56.736 kb on - strand, within Ac3H11_937 at 56.736 kb on - strand, within Ac3H11_937 at 56.736 kb on - strand, within Ac3H11_937 at 56.736 kb on - strand, within Ac3H11_937 at 56.736 kb on - strand, within Ac3H11_937 at 56.736 kb on - strand, within Ac3H11_937 at 57.035 kb on - strand, within Ac3H11_937 at 57.035 kb on - strand, within Ac3H11_937 at 57.463 kb on + strand at 57.470 kb on + strand at 57.705 kb on + strand at 57.705 kb on + strand at 57.705 kb on + strand at 57.764 kb on + strand at 57.764 kb on + strand at 57.764 kb on + strand at 57.855 kb on + strand at 57.966 kb on + strand at 57.966 kb on + strand at 57.966 kb on + strand at 57.966 kb on + strand at 57.966 kb on + strand at 57.966 kb on + strand at 57.966 kb on + strand at 58.196 kb on + strand at 58.217 kb on + strand at 58.217 kb on + strand at 58.218 kb on - strand at 58.218 kb on - strand at 58.218 kb on - strand at 58.218 kb on - strand at 58.316 kb on + strand at 58.316 kb on + strand at 58.358 kb on + strand, within Ac3H11_938 at 58.359 kb on - strand, within Ac3H11_938 at 58.359 kb on - strand, within Ac3H11_938 at 58.359 kb on - strand, within Ac3H11_938 at 58.517 kb on + strand, within Ac3H11_938 at 58.517 kb on + strand, within Ac3H11_938 at 58.518 kb on - strand, within Ac3H11_938 at 58.518 kb on - strand, within Ac3H11_938
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 10 mM remove 56,729 + Ac3H11_937 0.72 -1.3 56,729 + Ac3H11_937 0.72 -2.0 56,729 + Ac3H11_937 0.72 -3.1 56,729 + Ac3H11_937 0.72 -1.7 56,729 + Ac3H11_937 0.72 -0.6 56,729 + Ac3H11_937 0.72 -2.7 56,729 + Ac3H11_937 0.72 -1.1 56,729 + Ac3H11_937 0.72 -0.9 56,729 + Ac3H11_937 0.72 +0.2 56,730 - Ac3H11_937 0.72 -0.8 56,730 - Ac3H11_937 0.72 -0.4 56,730 - Ac3H11_937 0.72 -2.5 56,730 - Ac3H11_937 0.72 -1.0 56,735 + Ac3H11_937 0.73 +0.1 56,735 + Ac3H11_937 0.73 -2.5 56,735 + Ac3H11_937 0.73 -2.1 56,735 + Ac3H11_937 0.73 -1.0 56,735 + Ac3H11_937 0.73 -0.4 56,735 + Ac3H11_937 0.73 -0.7 56,735 + Ac3H11_937 0.73 -1.8 56,735 + Ac3H11_937 0.73 -0.2 56,735 + Ac3H11_937 0.73 -1.2 56,736 - Ac3H11_937 0.73 -2.6 56,736 - Ac3H11_937 0.73 -1.5 56,736 - Ac3H11_937 0.73 -1.3 56,736 - Ac3H11_937 0.73 -3.0 56,736 - Ac3H11_937 0.73 -3.1 56,736 - Ac3H11_937 0.73 -0.3 56,736 - Ac3H11_937 0.73 -0.3 56,736 - Ac3H11_937 0.73 -2.8 57,035 - Ac3H11_937 0.85 +0.3 57,035 - Ac3H11_937 0.85 -1.6 57,463 + -0.3 57,470 + -0.4 57,705 + -0.8 57,705 + +2.2 57,705 + -0.5 57,764 + +0.7 57,764 + +0.5 57,764 + -0.2 57,855 + -0.1 57,966 + -1.1 57,966 + +0.7 57,966 + +1.1 57,966 + -0.5 57,966 + +0.8 57,966 + -0.6 57,966 + +0.1 58,196 + -1.4 58,217 + -0.6 58,217 + -0.3 58,218 - +0.4 58,218 - +0.8 58,218 - +0.2 58,218 - +0.5 58,316 + -0.8 58,316 + +2.7 58,358 + Ac3H11_938 0.17 -0.2 58,359 - Ac3H11_938 0.17 -1.1 58,359 - Ac3H11_938 0.17 -0.4 58,359 - Ac3H11_938 0.17 +0.1 58,517 + Ac3H11_938 0.44 +0.6 58,517 + Ac3H11_938 0.44 +0.6 58,518 - Ac3H11_938 0.44 -0.8 58,518 - Ac3H11_938 0.44 +0.9
Or see this region's nucleotide sequence