Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS29895

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS29880 and AZOBR_RS29885 are separated by 111 nucleotidesAZOBR_RS29885 and AZOBR_RS29890 overlap by 11 nucleotidesAZOBR_RS29890 and AZOBR_RS29895 are separated by 4 nucleotidesAZOBR_RS29895 and AZOBR_RS29900 overlap by 4 nucleotidesAZOBR_RS29900 and AZOBR_RS29905 are separated by 88 nucleotides AZOBR_RS29880: AZOBR_RS29880 - flagellin, at 49,689 to 50,933 _RS29880 AZOBR_RS29885: AZOBR_RS29885 - flagellar basal body protein FliL, at 51,045 to 51,437 _RS29885 AZOBR_RS29890: AZOBR_RS29890 - flagellar protein, at 51,427 to 51,864 _RS29890 AZOBR_RS29895: AZOBR_RS29895 - hypothetical protein, at 51,869 to 52,246 _RS29895 AZOBR_RS29900: AZOBR_RS29900 - flagellar basal body rod protein FlgG, at 52,243 to 53,037 _RS29900 AZOBR_RS29905: AZOBR_RS29905 - hypothetical protein, at 53,126 to 54,160 _RS29905 Position (kb) 51 52 53Strain fitness (log2 ratio) -2 -1 0 1 2at 50.986 kb on - strandat 51.033 kb on + strandat 51.033 kb on + strandat 51.034 kb on - strandat 51.034 kb on - strandat 51.034 kb on - strandat 51.105 kb on + strand, within AZOBR_RS29885at 51.105 kb on + strand, within AZOBR_RS29885at 51.426 kb on + strandat 51.426 kb on + strandat 51.427 kb on - strandat 51.427 kb on - strandat 51.427 kb on - strandat 51.506 kb on - strand, within AZOBR_RS29890at 51.643 kb on + strand, within AZOBR_RS29890at 51.644 kb on - strand, within AZOBR_RS29890at 51.679 kb on + strand, within AZOBR_RS29890at 51.679 kb on + strand, within AZOBR_RS29890at 51.679 kb on + strand, within AZOBR_RS29890at 51.680 kb on - strand, within AZOBR_RS29890at 51.680 kb on - strand, within AZOBR_RS29890at 51.752 kb on - strand, within AZOBR_RS29890at 51.752 kb on - strand, within AZOBR_RS29890at 51.754 kb on + strand, within AZOBR_RS29890at 51.754 kb on + strand, within AZOBR_RS29890at 51.754 kb on + strand, within AZOBR_RS29890at 51.754 kb on + strand, within AZOBR_RS29890at 51.755 kb on - strand, within AZOBR_RS29890at 51.755 kb on - strand, within AZOBR_RS29890at 51.755 kb on - strand, within AZOBR_RS29890at 51.755 kb on - strand, within AZOBR_RS29890at 51.755 kb on - strand, within AZOBR_RS29890at 52.178 kb on + strand, within AZOBR_RS29895at 52.178 kb on + strand, within AZOBR_RS29895at 52.261 kb on + strandat 52.262 kb on - strandat 52.292 kb on - strandat 52.339 kb on + strand, within AZOBR_RS29900at 52.339 kb on + strand, within AZOBR_RS29900at 52.340 kb on - strand, within AZOBR_RS29900at 52.402 kb on + strand, within AZOBR_RS29900at 52.444 kb on + strand, within AZOBR_RS29900at 52.444 kb on + strand, within AZOBR_RS29900at 52.444 kb on + strand, within AZOBR_RS29900at 52.445 kb on - strand, within AZOBR_RS29900at 52.445 kb on - strand, within AZOBR_RS29900at 52.445 kb on - strand, within AZOBR_RS29900at 52.681 kb on + strand, within AZOBR_RS29900at 52.682 kb on - strand, within AZOBR_RS29900at 52.682 kb on - strand, within AZOBR_RS29900at 52.682 kb on - strand, within AZOBR_RS29900at 52.897 kb on + strand, within AZOBR_RS29900at 52.897 kb on + strand, within AZOBR_RS29900at 52.897 kb on + strand, within AZOBR_RS29900at 52.897 kb on + strand, within AZOBR_RS29900at 52.898 kb on - strand, within AZOBR_RS29900at 52.898 kb on - strand, within AZOBR_RS29900at 52.898 kb on - strand, within AZOBR_RS29900at 52.898 kb on - strand, within AZOBR_RS29900at 52.898 kb on - strand, within AZOBR_RS29900at 52.898 kb on - strand, within AZOBR_RS29900at 52.945 kb on + strand, within AZOBR_RS29900at 52.946 kb on - strand, within AZOBR_RS29900at 52.946 kb on - strand, within AZOBR_RS29900at 53.185 kb on + strandat 53.186 kb on - strandat 53.186 kb on - strandat 53.186 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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50,986 - -0.1
51,033 + -0.8
51,033 + -0.0
51,034 - +0.0
51,034 - -0.4
51,034 - -0.3
51,105 + AZOBR_RS29885 0.15 -0.1
51,105 + AZOBR_RS29885 0.15 -0.0
51,426 + +0.6
51,426 + +1.3
51,427 - -0.2
51,427 - +1.6
51,427 - -0.2
51,506 - AZOBR_RS29890 0.18 -0.3
51,643 + AZOBR_RS29890 0.49 +0.1
51,644 - AZOBR_RS29890 0.50 +1.7
51,679 + AZOBR_RS29890 0.58 +0.4
51,679 + AZOBR_RS29890 0.58 -0.2
51,679 + AZOBR_RS29890 0.58 +0.2
51,680 - AZOBR_RS29890 0.58 -0.4
51,680 - AZOBR_RS29890 0.58 -0.3
51,752 - AZOBR_RS29890 0.74 -1.3
51,752 - AZOBR_RS29890 0.74 +0.3
51,754 + AZOBR_RS29890 0.75 -0.2
51,754 + AZOBR_RS29890 0.75 +1.1
51,754 + AZOBR_RS29890 0.75 -1.4
51,754 + AZOBR_RS29890 0.75 -0.1
51,755 - AZOBR_RS29890 0.75 -0.2
51,755 - AZOBR_RS29890 0.75 +0.3
51,755 - AZOBR_RS29890 0.75 +1.0
51,755 - AZOBR_RS29890 0.75 +0.7
51,755 - AZOBR_RS29890 0.75 -0.7
52,178 + AZOBR_RS29895 0.82 -2.1
52,178 + AZOBR_RS29895 0.82 -0.2
52,261 + -0.2
52,262 - -0.2
52,292 - +0.5
52,339 + AZOBR_RS29900 0.12 +0.4
52,339 + AZOBR_RS29900 0.12 -0.5
52,340 - AZOBR_RS29900 0.12 -0.0
52,402 + AZOBR_RS29900 0.20 -0.1
52,444 + AZOBR_RS29900 0.25 -0.1
52,444 + AZOBR_RS29900 0.25 +0.8
52,444 + AZOBR_RS29900 0.25 +2.0
52,445 - AZOBR_RS29900 0.25 +0.3
52,445 - AZOBR_RS29900 0.25 -0.2
52,445 - AZOBR_RS29900 0.25 -0.0
52,681 + AZOBR_RS29900 0.55 -0.1
52,682 - AZOBR_RS29900 0.55 -0.2
52,682 - AZOBR_RS29900 0.55 -0.5
52,682 - AZOBR_RS29900 0.55 -0.6
52,897 + AZOBR_RS29900 0.82 +1.1
52,897 + AZOBR_RS29900 0.82 +0.3
52,897 + AZOBR_RS29900 0.82 +0.4
52,897 + AZOBR_RS29900 0.82 -0.3
52,898 - AZOBR_RS29900 0.82 -0.4
52,898 - AZOBR_RS29900 0.82 +0.2
52,898 - AZOBR_RS29900 0.82 -0.0
52,898 - AZOBR_RS29900 0.82 +0.9
52,898 - AZOBR_RS29900 0.82 -2.1
52,898 - AZOBR_RS29900 0.82 +0.0
52,945 + AZOBR_RS29900 0.88 +0.8
52,946 - AZOBR_RS29900 0.88 +0.5
52,946 - AZOBR_RS29900 0.88 -0.6
53,185 + -0.1
53,186 - +0.2
53,186 - -0.1
53,186 - -0.4

Or see this region's nucleotide sequence