Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS10505

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS10500 and AZOBR_RS10505 are separated by 64 nucleotidesAZOBR_RS10505 and AZOBR_RS10510 are separated by 110 nucleotides AZOBR_RS10500: AZOBR_RS10500 - homoserine kinase, at 2,203,280 to 2,204,263 _RS10500 AZOBR_RS10505: AZOBR_RS10505 - ribonuclease H, at 2,204,328 to 2,204,762 _RS10505 AZOBR_RS10510: AZOBR_RS10510 - amP-dependent synthetase and ligase, at 2,204,873 to 2,206,471 _RS10510 Position (kb) 2204 2205Strain fitness (log2 ratio) -2 -1 0 1at 2204.253 kb on - strandat 2204.416 kb on - strand, within AZOBR_RS10505at 2204.526 kb on + strand, within AZOBR_RS10505at 2204.526 kb on + strand, within AZOBR_RS10505at 2205.005 kb on + strandat 2205.006 kb on - strandat 2205.407 kb on + strandat 2205.407 kb on + strand, within AZOBR_RS10510at 2205.407 kb on + strand, within AZOBR_RS10510at 2205.407 kb on + strand, within AZOBR_RS10510at 2205.521 kb on + strand, within AZOBR_RS10510at 2205.521 kb on + strand, within AZOBR_RS10510at 2205.522 kb on - strand, within AZOBR_RS10510at 2205.522 kb on - strand, within AZOBR_RS10510at 2205.522 kb on - strand, within AZOBR_RS10510at 2205.557 kb on + strand, within AZOBR_RS10510at 2205.557 kb on + strand, within AZOBR_RS10510at 2205.557 kb on + strand, within AZOBR_RS10510at 2205.558 kb on - strand, within AZOBR_RS10510

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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2,204,253 - -1.8
2,204,416 - AZOBR_RS10505 0.20 -1.7
2,204,526 + AZOBR_RS10505 0.46 -1.0
2,204,526 + AZOBR_RS10505 0.46 -0.8
2,205,005 + -0.6
2,205,006 - +0.7
2,205,407 + +0.8
2,205,407 + AZOBR_RS10510 0.33 +0.1
2,205,407 + AZOBR_RS10510 0.33 +0.6
2,205,407 + AZOBR_RS10510 0.33 +0.2
2,205,521 + AZOBR_RS10510 0.41 -1.3
2,205,521 + AZOBR_RS10510 0.41 -0.9
2,205,522 - AZOBR_RS10510 0.41 -0.1
2,205,522 - AZOBR_RS10510 0.41 +0.6
2,205,522 - AZOBR_RS10510 0.41 -0.6
2,205,557 + AZOBR_RS10510 0.43 -0.1
2,205,557 + AZOBR_RS10510 0.43 -0.3
2,205,557 + AZOBR_RS10510 0.43 -0.1
2,205,558 - AZOBR_RS10510 0.43 -0.2

Or see this region's nucleotide sequence