Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS05455 and AZOBR_RS05460 are separated by 229 nucleotides AZOBR_RS05460 and AZOBR_RS05465 are separated by 210 nucleotides AZOBR_RS05465 and AZOBR_RS05470 are separated by 5 nucleotides
AZOBR_RS05455: AZOBR_RS05455 - chemotaxis protein, at 1,161,554 to 1,163,545
_RS05455
AZOBR_RS05460: AZOBR_RS05460 - hypothetical protein, at 1,163,775 to 1,164,074
_RS05460
AZOBR_RS05465: AZOBR_RS05465 - ferredoxin, at 1,164,285 to 1,164,569
_RS05465
AZOBR_RS05470: AZOBR_RS05470 - protein fixC, at 1,164,575 to 1,165,876
_RS05470
Position (kb) 1164
1165 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1163.370 kb on + strand at 1163.370 kb on + strand at 1163.742 kb on - strand at 1163.812 kb on + strand, within AZOBR_RS05460 at 1163.813 kb on - strand, within AZOBR_RS05460 at 1163.813 kb on - strand, within AZOBR_RS05460 at 1163.813 kb on - strand, within AZOBR_RS05460 at 1163.827 kb on + strand, within AZOBR_RS05460 at 1163.827 kb on + strand, within AZOBR_RS05460 at 1163.828 kb on - strand, within AZOBR_RS05460 at 1163.854 kb on + strand, within AZOBR_RS05460 at 1163.854 kb on + strand, within AZOBR_RS05460 at 1163.854 kb on + strand, within AZOBR_RS05460 at 1163.855 kb on - strand, within AZOBR_RS05460 at 1163.855 kb on - strand, within AZOBR_RS05460 at 1163.992 kb on + strand, within AZOBR_RS05460 at 1163.992 kb on + strand, within AZOBR_RS05460 at 1163.992 kb on + strand, within AZOBR_RS05460 at 1163.992 kb on + strand, within AZOBR_RS05460 at 1163.993 kb on - strand, within AZOBR_RS05460 at 1163.993 kb on - strand, within AZOBR_RS05460 at 1163.993 kb on - strand, within AZOBR_RS05460 at 1164.004 kb on + strand, within AZOBR_RS05460 at 1164.004 kb on + strand, within AZOBR_RS05460 at 1164.004 kb on + strand, within AZOBR_RS05460 at 1164.005 kb on - strand, within AZOBR_RS05460 at 1164.005 kb on - strand, within AZOBR_RS05460 at 1164.114 kb on + strand at 1164.114 kb on + strand at 1164.114 kb on + strand at 1164.115 kb on - strand at 1164.226 kb on - strand at 1164.226 kb on - strand at 1164.296 kb on + strand at 1164.296 kb on + strand at 1164.296 kb on + strand at 1164.299 kb on - strand at 1164.299 kb on - strand at 1164.430 kb on + strand, within AZOBR_RS05465 at 1164.431 kb on - strand, within AZOBR_RS05465 at 1164.431 kb on - strand, within AZOBR_RS05465 at 1164.533 kb on - strand, within AZOBR_RS05465 at 1164.544 kb on + strand at 1164.832 kb on - strand, within AZOBR_RS05470 at 1164.994 kb on - strand, within AZOBR_RS05470 at 1165.014 kb on + strand, within AZOBR_RS05470 at 1165.015 kb on - strand, within AZOBR_RS05470 at 1165.015 kb on - strand, within AZOBR_RS05470 at 1165.045 kb on - strand, within AZOBR_RS05470 at 1165.117 kb on - strand, within AZOBR_RS05470 at 1165.191 kb on + strand, within AZOBR_RS05470
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 1,163,370 + -0.9 1,163,370 + -0.4 1,163,742 - +0.9 1,163,812 + AZOBR_RS05460 0.12 +0.2 1,163,813 - AZOBR_RS05460 0.13 -0.0 1,163,813 - AZOBR_RS05460 0.13 -0.4 1,163,813 - AZOBR_RS05460 0.13 -0.1 1,163,827 + AZOBR_RS05460 0.17 -0.1 1,163,827 + AZOBR_RS05460 0.17 +0.4 1,163,828 - AZOBR_RS05460 0.18 -0.7 1,163,854 + AZOBR_RS05460 0.26 +1.0 1,163,854 + AZOBR_RS05460 0.26 +0.7 1,163,854 + AZOBR_RS05460 0.26 +0.3 1,163,855 - AZOBR_RS05460 0.27 +0.2 1,163,855 - AZOBR_RS05460 0.27 +0.4 1,163,992 + AZOBR_RS05460 0.72 +1.9 1,163,992 + AZOBR_RS05460 0.72 +0.5 1,163,992 + AZOBR_RS05460 0.72 -1.3 1,163,992 + AZOBR_RS05460 0.72 +0.0 1,163,993 - AZOBR_RS05460 0.73 +0.7 1,163,993 - AZOBR_RS05460 0.73 +0.6 1,163,993 - AZOBR_RS05460 0.73 -0.4 1,164,004 + AZOBR_RS05460 0.76 -0.2 1,164,004 + AZOBR_RS05460 0.76 +0.1 1,164,004 + AZOBR_RS05460 0.76 -0.2 1,164,005 - AZOBR_RS05460 0.77 +0.2 1,164,005 - AZOBR_RS05460 0.77 -2.3 1,164,114 + -1.0 1,164,114 + +0.6 1,164,114 + -1.9 1,164,115 - +0.3 1,164,226 - -0.2 1,164,226 - -0.5 1,164,296 + +1.5 1,164,296 + +0.1 1,164,296 + +0.2 1,164,299 - -0.2 1,164,299 - +0.2 1,164,430 + AZOBR_RS05465 0.51 +1.4 1,164,431 - AZOBR_RS05465 0.51 +0.0 1,164,431 - AZOBR_RS05465 0.51 +0.6 1,164,533 - AZOBR_RS05465 0.87 +1.3 1,164,544 + +0.2 1,164,832 - AZOBR_RS05470 0.20 +0.2 1,164,994 - AZOBR_RS05470 0.32 +0.0 1,165,014 + AZOBR_RS05470 0.34 +0.1 1,165,015 - AZOBR_RS05470 0.34 +0.4 1,165,015 - AZOBR_RS05470 0.34 -1.1 1,165,045 - AZOBR_RS05470 0.36 +0.2 1,165,117 - AZOBR_RS05470 0.42 -0.3 1,165,191 + AZOBR_RS05470 0.47 +0.4
Or see this region's nucleotide sequence