Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS02865 and AZOBR_RS02870 are separated by 138 nucleotides AZOBR_RS02870 and AZOBR_RS02875 are separated by 394 nucleotides
AZOBR_RS02865: AZOBR_RS02865 - preprotein translocase subunit SecA, at 607,442 to 610,192
_RS02865
AZOBR_RS02870: AZOBR_RS02870 - mechanosensitive ion channel protein MscL, at 610,331 to 610,774
_RS02870
AZOBR_RS02875: AZOBR_RS02875 - RNA helicase, at 611,169 to 612,329
_RS02875
Position (kb) 611
612
613 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 610.491 kb on - strand, within AZOBR_RS02870 at 610.491 kb on - strand, within AZOBR_RS02870 at 610.518 kb on - strand, within AZOBR_RS02870 at 610.518 kb on - strand, within AZOBR_RS02870 at 610.518 kb on - strand, within AZOBR_RS02870 at 610.566 kb on - strand, within AZOBR_RS02870 at 610.808 kb on + strand at 610.808 kb on + strand at 611.021 kb on - strand at 611.025 kb on + strand at 611.214 kb on + strand at 611.214 kb on + strand at 611.439 kb on + strand, within AZOBR_RS02875 at 612.132 kb on + strand, within AZOBR_RS02875 at 612.133 kb on - strand, within AZOBR_RS02875 at 612.235 kb on - strand at 612.565 kb on + strand at 612.777 kb on - strand at 612.779 kb on - strand at 612.837 kb on + strand at 612.887 kb on - strand at 612.888 kb on + strand at 613.039 kb on - strand at 613.242 kb on + strand at 613.243 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 610,491 - AZOBR_RS02870 0.36 -0.3 610,491 - AZOBR_RS02870 0.36 +0.3 610,518 - AZOBR_RS02870 0.42 +0.3 610,518 - AZOBR_RS02870 0.42 +0.0 610,518 - AZOBR_RS02870 0.42 +0.3 610,566 - AZOBR_RS02870 0.53 +0.0 610,808 + -1.3 610,808 + -1.1 611,021 - -0.7 611,025 + -0.4 611,214 + -3.9 611,214 + -2.3 611,439 + AZOBR_RS02875 0.23 +0.6 612,132 + AZOBR_RS02875 0.83 -1.9 612,133 - AZOBR_RS02875 0.83 -0.5 612,235 - -0.9 612,565 + +0.2 612,777 - +0.7 612,779 - -0.2 612,837 + -0.7 612,887 - +0.1 612,888 + +0.3 613,039 - -0.1 613,242 + -0.2 613,243 - +0.5
Or see this region's nucleotide sequence