Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_28145

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_28135 and AO353_28140 are separated by 5 nucleotidesAO353_28140 and AO353_28145 are separated by 147 nucleotidesAO353_28145 and AO353_28150 are separated by 26 nucleotides AO353_28135: AO353_28135 - nickel permease, at 6,133,556 to 6,134,254 _28135 AO353_28140: AO353_28140 - ABC transporter permease, at 6,134,260 to 6,134,973 _28140 AO353_28145: AO353_28145 - amino acid ABC transporter substrate-binding protein, at 6,135,121 to 6,135,903 _28145 AO353_28150: AO353_28150 - arginine aminotransferase, at 6,135,930 to 6,137,933 _28150 Position (kb) 6135 6136Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 6134.238 kb on - strandat 6134.238 kb on - strandat 6134.289 kb on + strandat 6134.289 kb on + strandat 6134.289 kb on + strandat 6134.290 kb on - strandat 6134.290 kb on - strandat 6134.315 kb on + strandat 6134.315 kb on + strandat 6134.315 kb on + strandat 6134.316 kb on - strandat 6134.316 kb on - strandat 6134.339 kb on + strand, within AO353_28140at 6134.339 kb on + strand, within AO353_28140at 6134.339 kb on + strand, within AO353_28140at 6134.339 kb on + strand, within AO353_28140at 6134.340 kb on - strand, within AO353_28140at 6134.340 kb on - strand, within AO353_28140at 6134.340 kb on - strand, within AO353_28140at 6134.340 kb on - strand, within AO353_28140at 6134.340 kb on - strand, within AO353_28140at 6134.340 kb on - strand, within AO353_28140at 6134.340 kb on - strand, within AO353_28140at 6134.342 kb on + strand, within AO353_28140at 6134.342 kb on + strand, within AO353_28140at 6134.342 kb on + strand, within AO353_28140at 6134.342 kb on + strand, within AO353_28140at 6134.342 kb on + strand, within AO353_28140at 6134.342 kb on + strand, within AO353_28140at 6134.343 kb on - strand, within AO353_28140at 6134.343 kb on - strand, within AO353_28140at 6134.343 kb on - strand, within AO353_28140at 6134.343 kb on - strand, within AO353_28140at 6134.343 kb on - strand, within AO353_28140at 6134.343 kb on - strand, within AO353_28140at 6134.343 kb on - strand, within AO353_28140at 6134.343 kb on - strand, within AO353_28140at 6134.363 kb on + strand, within AO353_28140at 6134.363 kb on + strand, within AO353_28140at 6134.363 kb on + strand, within AO353_28140at 6134.364 kb on - strand, within AO353_28140at 6134.364 kb on - strand, within AO353_28140at 6134.375 kb on + strand, within AO353_28140at 6134.376 kb on - strand, within AO353_28140at 6134.376 kb on - strand, within AO353_28140at 6134.376 kb on - strand, within AO353_28140at 6134.411 kb on + strand, within AO353_28140at 6134.411 kb on + strand, within AO353_28140at 6134.412 kb on - strand, within AO353_28140at 6134.412 kb on - strand, within AO353_28140at 6134.412 kb on - strand, within AO353_28140at 6134.499 kb on - strand, within AO353_28140at 6134.624 kb on + strand, within AO353_28140at 6134.625 kb on - strand, within AO353_28140at 6134.735 kb on + strand, within AO353_28140at 6134.735 kb on + strand, within AO353_28140at 6134.735 kb on + strand, within AO353_28140at 6134.735 kb on + strand, within AO353_28140at 6134.735 kb on + strand, within AO353_28140at 6134.736 kb on - strand, within AO353_28140at 6134.736 kb on - strand, within AO353_28140at 6134.736 kb on - strand, within AO353_28140at 6134.736 kb on - strand, within AO353_28140at 6134.736 kb on - strand, within AO353_28140at 6134.736 kb on - strand, within AO353_28140at 6134.736 kb on - strand, within AO353_28140at 6134.736 kb on - strand, within AO353_28140at 6134.738 kb on + strand, within AO353_28140at 6134.738 kb on + strand, within AO353_28140at 6134.739 kb on - strand, within AO353_28140at 6134.790 kb on - strand, within AO353_28140at 6134.790 kb on - strand, within AO353_28140at 6134.790 kb on - strand, within AO353_28140at 6134.888 kb on - strand, within AO353_28140at 6135.109 kb on + strandat 6135.109 kb on + strandat 6135.109 kb on + strandat 6135.110 kb on - strandat 6135.110 kb on - strandat 6135.122 kb on + strandat 6135.123 kb on - strandat 6135.152 kb on + strandat 6135.173 kb on + strandat 6135.174 kb on - strandat 6135.281 kb on + strand, within AO353_28145at 6135.281 kb on + strand, within AO353_28145at 6135.416 kb on + strand, within AO353_28145at 6135.417 kb on - strand, within AO353_28145at 6135.417 kb on - strand, within AO353_28145at 6135.417 kb on - strand, within AO353_28145at 6135.417 kb on - strand, within AO353_28145at 6135.417 kb on - strand, within AO353_28145at 6135.419 kb on + strand, within AO353_28145at 6135.419 kb on + strand, within AO353_28145at 6135.419 kb on + strand, within AO353_28145at 6135.419 kb on + strand, within AO353_28145at 6135.420 kb on - strand, within AO353_28145at 6135.443 kb on + strand, within AO353_28145at 6135.443 kb on + strand, within AO353_28145at 6135.444 kb on - strand, within AO353_28145at 6135.444 kb on - strand, within AO353_28145at 6135.444 kb on - strand, within AO353_28145at 6135.444 kb on - strand, within AO353_28145at 6135.446 kb on + strand, within AO353_28145at 6135.446 kb on + strand, within AO353_28145at 6135.446 kb on + strand, within AO353_28145at 6135.446 kb on + strand, within AO353_28145at 6135.447 kb on - strand, within AO353_28145at 6135.447 kb on - strand, within AO353_28145at 6135.447 kb on - strand, within AO353_28145at 6135.447 kb on - strand, within AO353_28145at 6135.459 kb on - strand, within AO353_28145at 6135.518 kb on + strand, within AO353_28145at 6135.570 kb on - strand, within AO353_28145at 6135.570 kb on - strand, within AO353_28145at 6135.572 kb on + strand, within AO353_28145at 6135.635 kb on - strand, within AO353_28145at 6135.635 kb on - strand, within AO353_28145at 6135.856 kb on + strandat 6135.923 kb on + strandat 6135.924 kb on - strandat 6135.928 kb on + strandat 6135.928 kb on + strandat 6135.928 kb on + strandat 6135.928 kb on + strandat 6135.929 kb on - strandat 6135.929 kb on - strandat 6135.929 kb on - strandat 6135.929 kb on - strandat 6135.984 kb on + strandat 6135.984 kb on + strandat 6135.984 kb on + strandat 6135.984 kb on + strandat 6135.984 kb on + strandat 6135.985 kb on - strandat 6135.985 kb on - strandat 6135.985 kb on - strandat 6135.985 kb on - strandat 6135.985 kb on - strandat 6136.037 kb on - strandat 6136.037 kb on - strandat 6136.778 kb on + strand, within AO353_28150at 6136.779 kb on - strand, within AO353_28150

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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6,134,238 - +1.6
6,134,238 - +1.0
6,134,289 + +0.4
6,134,289 + -2.0
6,134,289 + +0.5
6,134,290 - +0.6
6,134,290 - -0.7
6,134,315 + -0.5
6,134,315 + -0.4
6,134,315 + +1.4
6,134,316 - -1.6
6,134,316 - -1.4
6,134,339 + AO353_28140 0.11 -1.4
6,134,339 + AO353_28140 0.11 +0.3
6,134,339 + AO353_28140 0.11 +1.0
6,134,339 + AO353_28140 0.11 -0.0
6,134,340 - AO353_28140 0.11 -0.7
6,134,340 - AO353_28140 0.11 -1.0
6,134,340 - AO353_28140 0.11 +0.3
6,134,340 - AO353_28140 0.11 -0.4
6,134,340 - AO353_28140 0.11 -0.2
6,134,340 - AO353_28140 0.11 -1.7
6,134,340 - AO353_28140 0.11 +2.0
6,134,342 + AO353_28140 0.11 -0.7
6,134,342 + AO353_28140 0.11 -1.7
6,134,342 + AO353_28140 0.11 +0.6
6,134,342 + AO353_28140 0.11 +1.4
6,134,342 + AO353_28140 0.11 -0.9
6,134,342 + AO353_28140 0.11 +1.0
6,134,343 - AO353_28140 0.12 -1.0
6,134,343 - AO353_28140 0.12 -1.0
6,134,343 - AO353_28140 0.12 +0.6
6,134,343 - AO353_28140 0.12 +0.7
6,134,343 - AO353_28140 0.12 -2.4
6,134,343 - AO353_28140 0.12 -0.5
6,134,343 - AO353_28140 0.12 +0.6
6,134,343 - AO353_28140 0.12 -1.9
6,134,363 + AO353_28140 0.14 -0.1
6,134,363 + AO353_28140 0.14 +1.8
6,134,363 + AO353_28140 0.14 +0.2
6,134,364 - AO353_28140 0.15 -0.5
6,134,364 - AO353_28140 0.15 -0.2
6,134,375 + AO353_28140 0.16 +0.2
6,134,376 - AO353_28140 0.16 -0.3
6,134,376 - AO353_28140 0.16 +0.6
6,134,376 - AO353_28140 0.16 -0.0
6,134,411 + AO353_28140 0.21 -0.9
6,134,411 + AO353_28140 0.21 -1.1
6,134,412 - AO353_28140 0.21 -0.4
6,134,412 - AO353_28140 0.21 +0.4
6,134,412 - AO353_28140 0.21 -0.7
6,134,499 - AO353_28140 0.33 -0.4
6,134,624 + AO353_28140 0.51 +1.3
6,134,625 - AO353_28140 0.51 -1.2
6,134,735 + AO353_28140 0.67 +0.6
6,134,735 + AO353_28140 0.67 -0.4
6,134,735 + AO353_28140 0.67 -0.0
6,134,735 + AO353_28140 0.67 -0.7
6,134,735 + AO353_28140 0.67 -0.4
6,134,736 - AO353_28140 0.67 -0.8
6,134,736 - AO353_28140 0.67 -0.1
6,134,736 - AO353_28140 0.67 -0.4
6,134,736 - AO353_28140 0.67 -0.6
6,134,736 - AO353_28140 0.67 -0.4
6,134,736 - AO353_28140 0.67 -0.0
6,134,736 - AO353_28140 0.67 -0.1
6,134,736 - AO353_28140 0.67 -1.2
6,134,738 + AO353_28140 0.67 -1.2
6,134,738 + AO353_28140 0.67 -0.1
6,134,739 - AO353_28140 0.67 -1.0
6,134,790 - AO353_28140 0.74 +0.3
6,134,790 - AO353_28140 0.74 +0.3
6,134,790 - AO353_28140 0.74 -0.7
6,134,888 - AO353_28140 0.88 -0.0
6,135,109 + -2.2
6,135,109 + -0.4
6,135,109 + +0.4
6,135,110 - -0.4
6,135,110 - -0.4
6,135,122 + +0.1
6,135,123 - -0.2
6,135,152 + +1.0
6,135,173 + +0.8
6,135,174 - -0.6
6,135,281 + AO353_28145 0.20 -0.2
6,135,281 + AO353_28145 0.20 +3.2
6,135,416 + AO353_28145 0.38 +0.3
6,135,417 - AO353_28145 0.38 -2.0
6,135,417 - AO353_28145 0.38 -1.0
6,135,417 - AO353_28145 0.38 +0.3
6,135,417 - AO353_28145 0.38 +0.6
6,135,417 - AO353_28145 0.38 -0.0
6,135,419 + AO353_28145 0.38 +0.3
6,135,419 + AO353_28145 0.38 +1.2
6,135,419 + AO353_28145 0.38 -0.1
6,135,419 + AO353_28145 0.38 -0.0
6,135,420 - AO353_28145 0.38 -0.9
6,135,443 + AO353_28145 0.41 +0.1
6,135,443 + AO353_28145 0.41 -1.4
6,135,444 - AO353_28145 0.41 +1.2
6,135,444 - AO353_28145 0.41 -0.7
6,135,444 - AO353_28145 0.41 -0.2
6,135,444 - AO353_28145 0.41 -1.4
6,135,446 + AO353_28145 0.42 +0.8
6,135,446 + AO353_28145 0.42 -1.6
6,135,446 + AO353_28145 0.42 +0.8
6,135,446 + AO353_28145 0.42 -0.7
6,135,447 - AO353_28145 0.42 +0.5
6,135,447 - AO353_28145 0.42 -0.4
6,135,447 - AO353_28145 0.42 -0.9
6,135,447 - AO353_28145 0.42 -0.3
6,135,459 - AO353_28145 0.43 +1.3
6,135,518 + AO353_28145 0.51 -1.0
6,135,570 - AO353_28145 0.57 +0.4
6,135,570 - AO353_28145 0.57 +0.3
6,135,572 + AO353_28145 0.58 -1.2
6,135,635 - AO353_28145 0.66 -0.5
6,135,635 - AO353_28145 0.66 -1.0
6,135,856 + -0.3
6,135,923 + -0.3
6,135,924 - +1.2
6,135,928 + +1.2
6,135,928 + -0.0
6,135,928 + +1.6
6,135,928 + -1.0
6,135,929 - -0.2
6,135,929 - +1.0
6,135,929 - -0.9
6,135,929 - -0.6
6,135,984 + -0.6
6,135,984 + -0.0
6,135,984 + -3.2
6,135,984 + +0.3
6,135,984 + +0.6
6,135,985 - -1.6
6,135,985 - -0.8
6,135,985 - -0.1
6,135,985 - +0.6
6,135,985 - +0.2
6,136,037 - +0.3
6,136,037 - -0.7
6,136,778 + AO353_28150 0.42 -1.0
6,136,779 - AO353_28150 0.42 -0.8

Or see this region's nucleotide sequence