Experiment: Ethanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_20335 and AO353_20340 overlap by 1 nucleotides AO353_20340 and AO353_20345 are separated by 13 nucleotides AO353_20345 and AO353_20350 are separated by 11 nucleotides
AO353_20335: AO353_20335 - 3-methylcrotonyl-CoA carboxylase, at 4,468,753 to 4,470,702
_20335
AO353_20340: AO353_20340 - gamma-carboxygeranoyl-CoA hydratase, at 4,470,702 to 4,471,517
_20340
AO353_20345: AO353_20345 - methylcrotonoyl-CoA carboxylase, at 4,471,531 to 4,473,138
_20345
AO353_20350: AO353_20350 - Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) , at 4,473,150 to 4,474,313
_20350
Position (kb)
4471
4472
4473
4474 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4470.902 kb on + strand, within AO353_20340 at 4470.961 kb on + strand, within AO353_20340 at 4471.180 kb on + strand, within AO353_20340 at 4471.181 kb on - strand, within AO353_20340 at 4471.234 kb on + strand, within AO353_20340 at 4471.234 kb on + strand, within AO353_20340 at 4471.234 kb on + strand, within AO353_20340 at 4471.234 kb on + strand, within AO353_20340 at 4471.235 kb on - strand, within AO353_20340 at 4471.235 kb on - strand, within AO353_20340 at 4471.235 kb on - strand, within AO353_20340 at 4471.235 kb on - strand, within AO353_20340 at 4471.280 kb on - strand, within AO353_20340 at 4471.567 kb on - strand at 4471.661 kb on + strand at 4471.661 kb on + strand at 4471.661 kb on + strand at 4471.661 kb on + strand at 4471.662 kb on - strand at 4471.685 kb on + strand at 4471.853 kb on + strand, within AO353_20345 at 4471.874 kb on + strand, within AO353_20345 at 4471.874 kb on + strand, within AO353_20345 at 4471.875 kb on - strand, within AO353_20345 at 4471.875 kb on - strand, within AO353_20345 at 4471.875 kb on - strand, within AO353_20345 at 4471.875 kb on - strand, within AO353_20345 at 4471.985 kb on + strand, within AO353_20345 at 4471.985 kb on + strand, within AO353_20345 at 4471.985 kb on + strand, within AO353_20345 at 4471.985 kb on + strand, within AO353_20345 at 4471.985 kb on + strand, within AO353_20345 at 4471.985 kb on + strand, within AO353_20345 at 4471.986 kb on - strand, within AO353_20345 at 4471.986 kb on - strand, within AO353_20345 at 4471.986 kb on - strand, within AO353_20345 at 4472.158 kb on + strand, within AO353_20345 at 4472.159 kb on - strand, within AO353_20345 at 4472.159 kb on - strand, within AO353_20345 at 4472.270 kb on + strand, within AO353_20345 at 4472.270 kb on + strand, within AO353_20345 at 4472.270 kb on + strand, within AO353_20345 at 4472.270 kb on + strand, within AO353_20345 at 4472.271 kb on - strand, within AO353_20345 at 4472.271 kb on - strand, within AO353_20345 at 4472.289 kb on - strand, within AO353_20345 at 4472.308 kb on - strand, within AO353_20345 at 4472.308 kb on - strand, within AO353_20345 at 4472.397 kb on - strand, within AO353_20345 at 4472.559 kb on - strand, within AO353_20345 at 4472.559 kb on - strand, within AO353_20345 at 4472.559 kb on - strand, within AO353_20345 at 4472.717 kb on + strand, within AO353_20345 at 4472.717 kb on + strand, within AO353_20345 at 4472.717 kb on + strand, within AO353_20345 at 4472.718 kb on - strand, within AO353_20345 at 4472.718 kb on - strand, within AO353_20345 at 4472.789 kb on + strand, within AO353_20345 at 4472.789 kb on + strand, within AO353_20345 at 4472.789 kb on + strand, within AO353_20345 at 4472.789 kb on + strand, within AO353_20345 at 4472.790 kb on - strand, within AO353_20345 at 4472.790 kb on - strand, within AO353_20345 at 4472.894 kb on + strand, within AO353_20345 at 4472.895 kb on - strand, within AO353_20345 at 4472.994 kb on + strand at 4473.223 kb on + strand at 4473.223 kb on + strand at 4473.224 kb on - strand at 4473.271 kb on + strand, within AO353_20350 at 4473.272 kb on - strand, within AO353_20350 at 4473.272 kb on - strand, within AO353_20350 at 4473.272 kb on - strand, within AO353_20350 at 4473.272 kb on - strand at 4473.334 kb on + strand, within AO353_20350 at 4473.343 kb on - strand, within AO353_20350 at 4473.400 kb on + strand, within AO353_20350 at 4473.400 kb on + strand, within AO353_20350 at 4473.433 kb on + strand, within AO353_20350 at 4473.433 kb on + strand, within AO353_20350 at 4473.433 kb on + strand, within AO353_20350 at 4473.433 kb on + strand, within AO353_20350 at 4473.433 kb on + strand, within AO353_20350 at 4473.433 kb on + strand, within AO353_20350 at 4473.433 kb on + strand, within AO353_20350 at 4473.433 kb on + strand, within AO353_20350 at 4473.433 kb on + strand, within AO353_20350 at 4473.433 kb on + strand, within AO353_20350 at 4473.433 kb on + strand, within AO353_20350 at 4473.434 kb on - strand, within AO353_20350 at 4473.434 kb on - strand, within AO353_20350 at 4473.434 kb on - strand, within AO353_20350 at 4473.434 kb on - strand, within AO353_20350 at 4473.434 kb on - strand, within AO353_20350 at 4473.508 kb on + strand, within AO353_20350 at 4473.508 kb on + strand, within AO353_20350 at 4473.509 kb on - strand, within AO353_20350 at 4473.509 kb on - strand, within AO353_20350 at 4473.509 kb on - strand, within AO353_20350 at 4473.577 kb on + strand, within AO353_20350 at 4473.578 kb on - strand, within AO353_20350 at 4473.793 kb on + strand, within AO353_20350 at 4473.793 kb on + strand, within AO353_20350 at 4473.794 kb on - strand, within AO353_20350 at 4473.802 kb on + strand, within AO353_20350 at 4473.802 kb on + strand, within AO353_20350 at 4473.802 kb on + strand, within AO353_20350 at 4473.802 kb on + strand, within AO353_20350 at 4473.802 kb on + strand, within AO353_20350 at 4473.802 kb on + strand, within AO353_20350 at 4473.802 kb on + strand, within AO353_20350 at 4473.802 kb on + strand, within AO353_20350 at 4473.802 kb on + strand, within AO353_20350 at 4473.803 kb on - strand, within AO353_20350 at 4473.803 kb on - strand, within AO353_20350 at 4473.803 kb on - strand, within AO353_20350 at 4473.803 kb on - strand, within AO353_20350 at 4473.803 kb on - strand, within AO353_20350 at 4473.803 kb on - strand, within AO353_20350 at 4473.803 kb on - strand, within AO353_20350 at 4473.856 kb on + strand, within AO353_20350 at 4473.856 kb on + strand, within AO353_20350 at 4473.856 kb on + strand, within AO353_20350 at 4473.856 kb on + strand, within AO353_20350 at 4473.856 kb on + strand, within AO353_20350 at 4473.856 kb on + strand, within AO353_20350 at 4473.857 kb on - strand, within AO353_20350 at 4473.857 kb on - strand, within AO353_20350 at 4473.857 kb on - strand, within AO353_20350 at 4473.857 kb on - strand, within AO353_20350 at 4473.970 kb on + strand, within AO353_20350 at 4473.970 kb on + strand, within AO353_20350 at 4473.970 kb on + strand, within AO353_20350 at 4473.971 kb on - strand, within AO353_20350 at 4473.971 kb on - strand, within AO353_20350 at 4474.102 kb on + strand, within AO353_20350 at 4474.103 kb on - strand, within AO353_20350 at 4474.123 kb on + strand, within AO353_20350
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol (C) remove 4,470,902 + AO353_20340 0.25 -0.9 4,470,961 + AO353_20340 0.32 +0.5 4,471,180 + AO353_20340 0.59 -1.3 4,471,181 - AO353_20340 0.59 -0.4 4,471,234 + AO353_20340 0.65 +0.1 4,471,234 + AO353_20340 0.65 +0.5 4,471,234 + AO353_20340 0.65 -0.7 4,471,234 + AO353_20340 0.65 -2.2 4,471,235 - AO353_20340 0.65 -1.3 4,471,235 - AO353_20340 0.65 -1.1 4,471,235 - AO353_20340 0.65 -1.1 4,471,235 - AO353_20340 0.65 +1.5 4,471,280 - AO353_20340 0.71 +1.3 4,471,567 - +0.7 4,471,661 + -0.7 4,471,661 + -0.9 4,471,661 + -1.3 4,471,661 + -1.6 4,471,662 - -2.8 4,471,685 + -0.3 4,471,853 + AO353_20345 0.20 -0.9 4,471,874 + AO353_20345 0.21 -0.9 4,471,874 + AO353_20345 0.21 -1.3 4,471,875 - AO353_20345 0.21 +0.1 4,471,875 - AO353_20345 0.21 -0.9 4,471,875 - AO353_20345 0.21 +1.1 4,471,875 - AO353_20345 0.21 -0.3 4,471,985 + AO353_20345 0.28 +0.7 4,471,985 + AO353_20345 0.28 -1.3 4,471,985 + AO353_20345 0.28 +0.7 4,471,985 + AO353_20345 0.28 -0.7 4,471,985 + AO353_20345 0.28 +0.7 4,471,985 + AO353_20345 0.28 +0.9 4,471,986 - AO353_20345 0.28 -0.6 4,471,986 - AO353_20345 0.28 +0.4 4,471,986 - AO353_20345 0.28 -0.1 4,472,158 + AO353_20345 0.39 -1.9 4,472,159 - AO353_20345 0.39 -0.3 4,472,159 - AO353_20345 0.39 +0.4 4,472,270 + AO353_20345 0.46 -0.9 4,472,270 + AO353_20345 0.46 +0.4 4,472,270 + AO353_20345 0.46 -0.6 4,472,270 + AO353_20345 0.46 -0.7 4,472,271 - AO353_20345 0.46 -1.7 4,472,271 - AO353_20345 0.46 -1.3 4,472,289 - AO353_20345 0.47 -0.2 4,472,308 - AO353_20345 0.48 +0.5 4,472,308 - AO353_20345 0.48 -1.2 4,472,397 - AO353_20345 0.54 -2.0 4,472,559 - AO353_20345 0.64 -0.9 4,472,559 - AO353_20345 0.64 -0.6 4,472,559 - AO353_20345 0.64 -0.3 4,472,717 + AO353_20345 0.74 -1.4 4,472,717 + AO353_20345 0.74 -0.9 4,472,717 + AO353_20345 0.74 -0.6 4,472,718 - AO353_20345 0.74 -1.6 4,472,718 - AO353_20345 0.74 -0.8 4,472,789 + AO353_20345 0.78 -0.1 4,472,789 + AO353_20345 0.78 +1.0 4,472,789 + AO353_20345 0.78 -0.4 4,472,789 + AO353_20345 0.78 -0.1 4,472,790 - AO353_20345 0.78 +1.3 4,472,790 - AO353_20345 0.78 -0.8 4,472,894 + AO353_20345 0.85 -0.3 4,472,895 - AO353_20345 0.85 -2.4 4,472,994 + -0.3 4,473,223 + -0.1 4,473,223 + +0.6 4,473,224 - -0.4 4,473,271 + AO353_20350 0.10 +1.7 4,473,272 - AO353_20350 0.10 -0.6 4,473,272 - AO353_20350 0.10 +0.1 4,473,272 - AO353_20350 0.10 -1.3 4,473,272 - +1.7 4,473,334 + AO353_20350 0.16 -0.6 4,473,343 - AO353_20350 0.17 +1.7 4,473,400 + AO353_20350 0.21 -1.2 4,473,400 + AO353_20350 0.21 -1.6 4,473,433 + AO353_20350 0.24 +1.7 4,473,433 + AO353_20350 0.24 +0.5 4,473,433 + AO353_20350 0.24 -1.4 4,473,433 + AO353_20350 0.24 -1.3 4,473,433 + AO353_20350 0.24 +0.4 4,473,433 + AO353_20350 0.24 -0.3 4,473,433 + AO353_20350 0.24 -1.6 4,473,433 + AO353_20350 0.24 +0.7 4,473,433 + AO353_20350 0.24 +0.1 4,473,433 + AO353_20350 0.24 +0.3 4,473,433 + AO353_20350 0.24 -1.5 4,473,434 - AO353_20350 0.24 +0.4 4,473,434 - AO353_20350 0.24 +0.4 4,473,434 - AO353_20350 0.24 +0.5 4,473,434 - AO353_20350 0.24 +0.4 4,473,434 - AO353_20350 0.24 +1.2 4,473,508 + AO353_20350 0.31 -0.2 4,473,508 + AO353_20350 0.31 +1.1 4,473,509 - AO353_20350 0.31 +0.6 4,473,509 - AO353_20350 0.31 +0.3 4,473,509 - AO353_20350 0.31 -0.6 4,473,577 + AO353_20350 0.37 +0.7 4,473,578 - AO353_20350 0.37 -1.1 4,473,793 + AO353_20350 0.55 -1.1 4,473,793 + AO353_20350 0.55 +0.1 4,473,794 - AO353_20350 0.55 +0.3 4,473,802 + AO353_20350 0.56 -1.7 4,473,802 + AO353_20350 0.56 -0.3 4,473,802 + AO353_20350 0.56 +1.0 4,473,802 + AO353_20350 0.56 -1.4 4,473,802 + AO353_20350 0.56 -0.1 4,473,802 + AO353_20350 0.56 -0.1 4,473,802 + AO353_20350 0.56 -0.6 4,473,802 + AO353_20350 0.56 +1.1 4,473,802 + AO353_20350 0.56 -1.3 4,473,803 - AO353_20350 0.56 +1.0 4,473,803 - AO353_20350 0.56 -0.2 4,473,803 - AO353_20350 0.56 +0.1 4,473,803 - AO353_20350 0.56 +0.0 4,473,803 - AO353_20350 0.56 +1.0 4,473,803 - AO353_20350 0.56 -0.2 4,473,803 - AO353_20350 0.56 +0.7 4,473,856 + AO353_20350 0.61 +0.1 4,473,856 + AO353_20350 0.61 -1.4 4,473,856 + AO353_20350 0.61 -2.6 4,473,856 + AO353_20350 0.61 -0.6 4,473,856 + AO353_20350 0.61 +0.4 4,473,856 + AO353_20350 0.61 +1.4 4,473,857 - AO353_20350 0.61 -0.0 4,473,857 - AO353_20350 0.61 -0.5 4,473,857 - AO353_20350 0.61 -1.5 4,473,857 - AO353_20350 0.61 +1.4 4,473,970 + AO353_20350 0.70 -1.5 4,473,970 + AO353_20350 0.70 -0.9 4,473,970 + AO353_20350 0.70 +1.7 4,473,971 - AO353_20350 0.71 +0.3 4,473,971 - AO353_20350 0.71 -0.6 4,474,102 + AO353_20350 0.82 -1.2 4,474,103 - AO353_20350 0.82 -0.5 4,474,123 + AO353_20350 0.84 -0.9
Or see this region's nucleotide sequence