Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_20345

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_20335 and AO353_20340 overlap by 1 nucleotidesAO353_20340 and AO353_20345 are separated by 13 nucleotidesAO353_20345 and AO353_20350 are separated by 11 nucleotides AO353_20335: AO353_20335 - 3-methylcrotonyl-CoA carboxylase, at 4,468,753 to 4,470,702 _20335 AO353_20340: AO353_20340 - gamma-carboxygeranoyl-CoA hydratase, at 4,470,702 to 4,471,517 _20340 AO353_20345: AO353_20345 - methylcrotonoyl-CoA carboxylase, at 4,471,531 to 4,473,138 _20345 AO353_20350: AO353_20350 - Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data), at 4,473,150 to 4,474,313 _20350 Position (kb) 4471 4472 4473 4474Strain fitness (log2 ratio) -3 -2 -1 0 1at 4470.902 kb on + strand, within AO353_20340at 4470.961 kb on + strand, within AO353_20340at 4471.180 kb on + strand, within AO353_20340at 4471.181 kb on - strand, within AO353_20340at 4471.234 kb on + strand, within AO353_20340at 4471.234 kb on + strand, within AO353_20340at 4471.234 kb on + strand, within AO353_20340at 4471.234 kb on + strand, within AO353_20340at 4471.235 kb on - strand, within AO353_20340at 4471.235 kb on - strand, within AO353_20340at 4471.235 kb on - strand, within AO353_20340at 4471.235 kb on - strand, within AO353_20340at 4471.280 kb on - strand, within AO353_20340at 4471.567 kb on - strandat 4471.661 kb on + strandat 4471.661 kb on + strandat 4471.661 kb on + strandat 4471.661 kb on + strandat 4471.662 kb on - strandat 4471.685 kb on + strandat 4471.853 kb on + strand, within AO353_20345at 4471.874 kb on + strand, within AO353_20345at 4471.874 kb on + strand, within AO353_20345at 4471.875 kb on - strand, within AO353_20345at 4471.875 kb on - strand, within AO353_20345at 4471.875 kb on - strand, within AO353_20345at 4471.875 kb on - strand, within AO353_20345at 4471.985 kb on + strand, within AO353_20345at 4471.985 kb on + strand, within AO353_20345at 4471.985 kb on + strand, within AO353_20345at 4471.985 kb on + strand, within AO353_20345at 4471.985 kb on + strand, within AO353_20345at 4471.985 kb on + strand, within AO353_20345at 4471.986 kb on - strand, within AO353_20345at 4471.986 kb on - strand, within AO353_20345at 4471.986 kb on - strand, within AO353_20345at 4472.158 kb on + strand, within AO353_20345at 4472.159 kb on - strand, within AO353_20345at 4472.159 kb on - strand, within AO353_20345at 4472.270 kb on + strand, within AO353_20345at 4472.270 kb on + strand, within AO353_20345at 4472.270 kb on + strand, within AO353_20345at 4472.270 kb on + strand, within AO353_20345at 4472.271 kb on - strand, within AO353_20345at 4472.271 kb on - strand, within AO353_20345at 4472.289 kb on - strand, within AO353_20345at 4472.308 kb on - strand, within AO353_20345at 4472.308 kb on - strand, within AO353_20345at 4472.397 kb on - strand, within AO353_20345at 4472.559 kb on - strand, within AO353_20345at 4472.559 kb on - strand, within AO353_20345at 4472.559 kb on - strand, within AO353_20345at 4472.717 kb on + strand, within AO353_20345at 4472.717 kb on + strand, within AO353_20345at 4472.717 kb on + strand, within AO353_20345at 4472.718 kb on - strand, within AO353_20345at 4472.718 kb on - strand, within AO353_20345at 4472.789 kb on + strand, within AO353_20345at 4472.789 kb on + strand, within AO353_20345at 4472.789 kb on + strand, within AO353_20345at 4472.789 kb on + strand, within AO353_20345at 4472.790 kb on - strand, within AO353_20345at 4472.790 kb on - strand, within AO353_20345at 4472.894 kb on + strand, within AO353_20345at 4472.895 kb on - strand, within AO353_20345at 4472.994 kb on + strandat 4473.223 kb on + strandat 4473.223 kb on + strandat 4473.224 kb on - strandat 4473.271 kb on + strand, within AO353_20350at 4473.272 kb on - strand, within AO353_20350at 4473.272 kb on - strand, within AO353_20350at 4473.272 kb on - strand, within AO353_20350at 4473.272 kb on - strandat 4473.334 kb on + strand, within AO353_20350at 4473.343 kb on - strand, within AO353_20350at 4473.400 kb on + strand, within AO353_20350at 4473.400 kb on + strand, within AO353_20350at 4473.433 kb on + strand, within AO353_20350at 4473.433 kb on + strand, within AO353_20350at 4473.433 kb on + strand, within AO353_20350at 4473.433 kb on + strand, within AO353_20350at 4473.433 kb on + strand, within AO353_20350at 4473.433 kb on + strand, within AO353_20350at 4473.433 kb on + strand, within AO353_20350at 4473.433 kb on + strand, within AO353_20350at 4473.433 kb on + strand, within AO353_20350at 4473.433 kb on + strand, within AO353_20350at 4473.433 kb on + strand, within AO353_20350at 4473.434 kb on - strand, within AO353_20350at 4473.434 kb on - strand, within AO353_20350at 4473.434 kb on - strand, within AO353_20350at 4473.434 kb on - strand, within AO353_20350at 4473.434 kb on - strand, within AO353_20350at 4473.508 kb on + strand, within AO353_20350at 4473.508 kb on + strand, within AO353_20350at 4473.509 kb on - strand, within AO353_20350at 4473.509 kb on - strand, within AO353_20350at 4473.509 kb on - strand, within AO353_20350at 4473.577 kb on + strand, within AO353_20350at 4473.578 kb on - strand, within AO353_20350at 4473.793 kb on + strand, within AO353_20350at 4473.793 kb on + strand, within AO353_20350at 4473.794 kb on - strand, within AO353_20350at 4473.802 kb on + strand, within AO353_20350at 4473.802 kb on + strand, within AO353_20350at 4473.802 kb on + strand, within AO353_20350at 4473.802 kb on + strand, within AO353_20350at 4473.802 kb on + strand, within AO353_20350at 4473.802 kb on + strand, within AO353_20350at 4473.802 kb on + strand, within AO353_20350at 4473.802 kb on + strand, within AO353_20350at 4473.802 kb on + strand, within AO353_20350at 4473.803 kb on - strand, within AO353_20350at 4473.803 kb on - strand, within AO353_20350at 4473.803 kb on - strand, within AO353_20350at 4473.803 kb on - strand, within AO353_20350at 4473.803 kb on - strand, within AO353_20350at 4473.803 kb on - strand, within AO353_20350at 4473.803 kb on - strand, within AO353_20350at 4473.856 kb on + strand, within AO353_20350at 4473.856 kb on + strand, within AO353_20350at 4473.856 kb on + strand, within AO353_20350at 4473.856 kb on + strand, within AO353_20350at 4473.856 kb on + strand, within AO353_20350at 4473.856 kb on + strand, within AO353_20350at 4473.857 kb on - strand, within AO353_20350at 4473.857 kb on - strand, within AO353_20350at 4473.857 kb on - strand, within AO353_20350at 4473.857 kb on - strand, within AO353_20350at 4473.970 kb on + strand, within AO353_20350at 4473.970 kb on + strand, within AO353_20350at 4473.970 kb on + strand, within AO353_20350at 4473.971 kb on - strand, within AO353_20350at 4473.971 kb on - strand, within AO353_20350at 4474.102 kb on + strand, within AO353_20350at 4474.103 kb on - strand, within AO353_20350at 4474.123 kb on + strand, within AO353_20350

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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4,470,902 + AO353_20340 0.25 -0.9
4,470,961 + AO353_20340 0.32 +0.5
4,471,180 + AO353_20340 0.59 -1.3
4,471,181 - AO353_20340 0.59 -0.4
4,471,234 + AO353_20340 0.65 +0.1
4,471,234 + AO353_20340 0.65 +0.5
4,471,234 + AO353_20340 0.65 -0.7
4,471,234 + AO353_20340 0.65 -2.2
4,471,235 - AO353_20340 0.65 -1.3
4,471,235 - AO353_20340 0.65 -1.1
4,471,235 - AO353_20340 0.65 -1.1
4,471,235 - AO353_20340 0.65 +1.5
4,471,280 - AO353_20340 0.71 +1.3
4,471,567 - +0.7
4,471,661 + -0.7
4,471,661 + -0.9
4,471,661 + -1.3
4,471,661 + -1.6
4,471,662 - -2.8
4,471,685 + -0.3
4,471,853 + AO353_20345 0.20 -0.9
4,471,874 + AO353_20345 0.21 -0.9
4,471,874 + AO353_20345 0.21 -1.3
4,471,875 - AO353_20345 0.21 +0.1
4,471,875 - AO353_20345 0.21 -0.9
4,471,875 - AO353_20345 0.21 +1.1
4,471,875 - AO353_20345 0.21 -0.3
4,471,985 + AO353_20345 0.28 +0.7
4,471,985 + AO353_20345 0.28 -1.3
4,471,985 + AO353_20345 0.28 +0.7
4,471,985 + AO353_20345 0.28 -0.7
4,471,985 + AO353_20345 0.28 +0.7
4,471,985 + AO353_20345 0.28 +0.9
4,471,986 - AO353_20345 0.28 -0.6
4,471,986 - AO353_20345 0.28 +0.4
4,471,986 - AO353_20345 0.28 -0.1
4,472,158 + AO353_20345 0.39 -1.9
4,472,159 - AO353_20345 0.39 -0.3
4,472,159 - AO353_20345 0.39 +0.4
4,472,270 + AO353_20345 0.46 -0.9
4,472,270 + AO353_20345 0.46 +0.4
4,472,270 + AO353_20345 0.46 -0.6
4,472,270 + AO353_20345 0.46 -0.7
4,472,271 - AO353_20345 0.46 -1.7
4,472,271 - AO353_20345 0.46 -1.3
4,472,289 - AO353_20345 0.47 -0.2
4,472,308 - AO353_20345 0.48 +0.5
4,472,308 - AO353_20345 0.48 -1.2
4,472,397 - AO353_20345 0.54 -2.0
4,472,559 - AO353_20345 0.64 -0.9
4,472,559 - AO353_20345 0.64 -0.6
4,472,559 - AO353_20345 0.64 -0.3
4,472,717 + AO353_20345 0.74 -1.4
4,472,717 + AO353_20345 0.74 -0.9
4,472,717 + AO353_20345 0.74 -0.6
4,472,718 - AO353_20345 0.74 -1.6
4,472,718 - AO353_20345 0.74 -0.8
4,472,789 + AO353_20345 0.78 -0.1
4,472,789 + AO353_20345 0.78 +1.0
4,472,789 + AO353_20345 0.78 -0.4
4,472,789 + AO353_20345 0.78 -0.1
4,472,790 - AO353_20345 0.78 +1.3
4,472,790 - AO353_20345 0.78 -0.8
4,472,894 + AO353_20345 0.85 -0.3
4,472,895 - AO353_20345 0.85 -2.4
4,472,994 + -0.3
4,473,223 + -0.1
4,473,223 + +0.6
4,473,224 - -0.4
4,473,271 + AO353_20350 0.10 +1.7
4,473,272 - AO353_20350 0.10 -0.6
4,473,272 - AO353_20350 0.10 +0.1
4,473,272 - AO353_20350 0.10 -1.3
4,473,272 - +1.7
4,473,334 + AO353_20350 0.16 -0.6
4,473,343 - AO353_20350 0.17 +1.7
4,473,400 + AO353_20350 0.21 -1.2
4,473,400 + AO353_20350 0.21 -1.6
4,473,433 + AO353_20350 0.24 +1.7
4,473,433 + AO353_20350 0.24 +0.5
4,473,433 + AO353_20350 0.24 -1.4
4,473,433 + AO353_20350 0.24 -1.3
4,473,433 + AO353_20350 0.24 +0.4
4,473,433 + AO353_20350 0.24 -0.3
4,473,433 + AO353_20350 0.24 -1.6
4,473,433 + AO353_20350 0.24 +0.7
4,473,433 + AO353_20350 0.24 +0.1
4,473,433 + AO353_20350 0.24 +0.3
4,473,433 + AO353_20350 0.24 -1.5
4,473,434 - AO353_20350 0.24 +0.4
4,473,434 - AO353_20350 0.24 +0.4
4,473,434 - AO353_20350 0.24 +0.5
4,473,434 - AO353_20350 0.24 +0.4
4,473,434 - AO353_20350 0.24 +1.2
4,473,508 + AO353_20350 0.31 -0.2
4,473,508 + AO353_20350 0.31 +1.1
4,473,509 - AO353_20350 0.31 +0.6
4,473,509 - AO353_20350 0.31 +0.3
4,473,509 - AO353_20350 0.31 -0.6
4,473,577 + AO353_20350 0.37 +0.7
4,473,578 - AO353_20350 0.37 -1.1
4,473,793 + AO353_20350 0.55 -1.1
4,473,793 + AO353_20350 0.55 +0.1
4,473,794 - AO353_20350 0.55 +0.3
4,473,802 + AO353_20350 0.56 -1.7
4,473,802 + AO353_20350 0.56 -0.3
4,473,802 + AO353_20350 0.56 +1.0
4,473,802 + AO353_20350 0.56 -1.4
4,473,802 + AO353_20350 0.56 -0.1
4,473,802 + AO353_20350 0.56 -0.1
4,473,802 + AO353_20350 0.56 -0.6
4,473,802 + AO353_20350 0.56 +1.1
4,473,802 + AO353_20350 0.56 -1.3
4,473,803 - AO353_20350 0.56 +1.0
4,473,803 - AO353_20350 0.56 -0.2
4,473,803 - AO353_20350 0.56 +0.1
4,473,803 - AO353_20350 0.56 +0.0
4,473,803 - AO353_20350 0.56 +1.0
4,473,803 - AO353_20350 0.56 -0.2
4,473,803 - AO353_20350 0.56 +0.7
4,473,856 + AO353_20350 0.61 +0.1
4,473,856 + AO353_20350 0.61 -1.4
4,473,856 + AO353_20350 0.61 -2.6
4,473,856 + AO353_20350 0.61 -0.6
4,473,856 + AO353_20350 0.61 +0.4
4,473,856 + AO353_20350 0.61 +1.4
4,473,857 - AO353_20350 0.61 -0.0
4,473,857 - AO353_20350 0.61 -0.5
4,473,857 - AO353_20350 0.61 -1.5
4,473,857 - AO353_20350 0.61 +1.4
4,473,970 + AO353_20350 0.70 -1.5
4,473,970 + AO353_20350 0.70 -0.9
4,473,970 + AO353_20350 0.70 +1.7
4,473,971 - AO353_20350 0.71 +0.3
4,473,971 - AO353_20350 0.71 -0.6
4,474,102 + AO353_20350 0.82 -1.2
4,474,103 - AO353_20350 0.82 -0.5
4,474,123 + AO353_20350 0.84 -0.9

Or see this region's nucleotide sequence